Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000542361
Gene ID: ENSG00000162144
Gene Name: CYB561A3
Sequence (UNICHARACTER ENCODING) GGCUGGAGACAGCUGAGGGGCAUCAGCUGGUUCAAGGAGUGCGUGAUCAGAAUGGUGUCUGGЖCGGUUCUACUUGUCCUGCCUGCUGCUGGGGUCCCUGGGCUCUAUGUGCAPCCUCUUCACUAUCUACUGGAUGCAGUACUGGCGUGGUGGCUUUGCCUGGAAUGGCAGCAUCUACAUGUUCAACUGGCACCCAGUGCUUAUGGUUGCUGGCAUGGUGGUAUUCUAUGGAGGUGCGUCACUGGUGUACCGCCUGCCCCAGUCGUGGGUGGGGCCCAAЖCUGCCCUGGAAACUCCPCCAUGCAGCGCUGCACCUGAUGGCCUUCGUCCUCACUGUUGUGGGGCUGGUUGCUGUCUPUACGUUUCACAACCAUGGAAGGACUGCCAACCUCUACUCCCUUCACAGCUGGCUGGGCAUCACCACUGUCUUCCUCUUCGCCUGCCAGUGGUUCCUGGGCUUUGCUGUCUUCCUCCUGCCCUGGGCGUCCAUGUGGCUGCGCAGCCUCCUAAAACCUAUCCACGUCUUUUUUGGAGCCGCCAPCCUCUCUCUGUCCAUCGCAPCCGUCAUUUCGGGCAUUAAUGAGAAGCUUUUCUUCAGUUUGAAAAACACCACCAGGCCAUACCACAGCCUGCCCAGUGAGGCGGUCUUUGC
Sequence (SHORT NAMES ENCODING) GGCUGGAGACAGCUGAGGGGCAUCAGCUGGUUCAAGGAGUGCGUGAUCAGAAUGGUGUCUGGm6ACGGUUCUACUUGUCCUGCCUGCUGCUGGGGUCCCUGGGCUCUAUGUGCAYCCUCUUCACUAUCUACUGGAUGCAGUACUGGCGUGGUGGCUUUGCCUGGAAUGGCAGCAUCUACAUGUUCAACUGGCACCCAGUGCUUAUGGUUGCUGGCAUGGUGGUAUUCUAUGGAGGUGCGUCACUGGUGUACCGCCUGCCCCAGUCGUGGGUGGGGCCCAAm6ACUGCCCUGGAAACUCCYCCAUGCAGCGCUGCACCUGAUGGCCUUCGUCCUCACUGUUGUGGGGCUGGUUGCUGUCUYUACGUUUCACAACCAUGGAAGGACUGCCAACCUCUACUCCCUUCACAGCUGGCUGGGCAUCACCACUGUCUUCCUCUUCGCCUGCCAGUGGUUCCUGGGCUUUGCUGUCUUCCUCCUGCCCUGGGCGUCCAUGUGGCUGCGCAGCCUCCUAAAACCUAUCCACGUCUUUUUUGGAGCCGCCAYCCUCUCUCUGUCCAUCGCAYCCGUCAUUUCGGGCAUUAAUGAGAAGCUUUUCUUCAGUUUGAAAAACACCACCAGGCCAUACCACAGCCUGCCCAGUGAGGCGGUCUUUGC
Sequence (MODOMICS CODE ENCODING) GGCUGGAGACAGCUGAGGGGCAUCAGCUGGUUCAAGGAGUGCGUGAUCAGAAUGGUGUCUGG2000000006ACGGUUCUACUUGUCCUGCCUGCUGCUGGGGUCCCUGGGCUCUAUGUGCA2000000009UCCUCUUCACUAUCUACUGGAUGCAGUACUGGCGUGGUGGCUUUGCCUGGAAUGGCAGCAUCUACAUGUUCAACUGGCACCCAGUGCUUAUGGUUGCUGGCAUGGUGGUAUUCUAUGGAGGUGCGUCACUGGUGUACCGCCUGCCCCAGUCGUGGGUGGGGCCCAA2000000006ACUGCCCUGGAAACUCC2000000009UCCAUGCAGCGCUGCACCUGAUGGCCUUCGUCCUCACUGUUGUGGGGCUGGUUGCUGUCU2000000009UUACGUUUCACAACCAUGGAAGGACUGCCAACCUCUACUCCCUUCACAGCUGGCUGGGCAUCACCACUGUCUUCCUCUUCGCCUGCCAGUGGUUCCUGGGCUUUGCUGUCUUCCUCCUGCCCUGGGCGUCCAUGUGGCUGCGCAGCCUCCUAAAACCUAUCCACGUCUUUUUUGGAGCCGCCA2000000009UCCUCUCUCUGUCCAUCGCA2000000009UCCGUCAUUUCGGGCAUUAAUGAGAAGCUUUUCUUCAGUUUGAAAAACACCACCAGGCCAUACCACAGCCUGCCCAGUGAGGCGGUCUUUGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 63 113 279 296 356 539 559
Modification Positions m6A Y m6A Y Y Y Y
Genomic Coordinates 11:61356702:- 11:61356652:- 11:61353949:- 11:61353932:- 11:61353872:- 11:61353045:- 11:61353025:-
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 834aFpha8RvT
ksEP666umrV9
ZuM5xpZmNuDL
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
Yfn77uLS5tv8