Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000531408
Gene ID: ENSG00000166801
Gene Name: FAM111A
Sequence (UNICHARACTER ENCODING) UCCCGCCCAGCUGGAGCUCUGGAGCCUUUGCUUCCUCAAAUACGAGCGGGAACUGCGUUGAGCGCUGGAUUCCAGGCCGAGUGCUGGCGAGGCGCGCAUGUUUCAGCUGAACCAUCCGUUCAUCUUCAAGCCAUCAUGAGCUGUAAGAAGCAGAGGUCACGGAAGCACUCAGUCAAUGAAAAAUGUAAUAUGAAAAUCGAGCACUAUUUUUCUCCGGUCUCUAAAGAGCAACAGAAUAAUUGCAGUACUUCUCUAAUGAGGAUGGAGUCUAGAGGAGACCCAAGAGCCACAACUAAUACCCAGGCUCAAAGAUUCCAUUCACCUAAGAAAAAUCCAGAAGACCAGACCAUGCCCCAAAAUAGGACAAUAUAUGUUACCUUGAAGGUAAACCACAGGAGAAACCAAGAUAUGAAACUUAAGCUCACACAUAGUGAGAAUAGUAGCUUAUAUAUGGCUCUCAACACUCUCCAGGCUGUCAGAAAAGAGAUAGAAACUCACCAAGGCCAAGAAAUGCUUGUGCGUGGCACAGAAGGAAUCAAAGAGUACAUAAACCUUGGAAUGCCCCUCAGUUGUUUCCCUGAAGGUGGCCAGGUGGUCAUUACAUUUUCCCAAAGUAAAAGUAAGCAGAAGGAAGAUAACCACAUAUUUGGCAGGCAGGACAAAGCAUCGACUGAAUGUGUCAAAUUUUACAUUCAUGCAAUUGGAAUUGGGAAGUGUAAAAGAAGGAUUGUUAAAUGUGGGAAGCUUCACAAAAAGGGGCGCAAACUCUGUGUUUAUGCUUUCAAAGGAGAAACCAUCAAGGAUGCACUGUGCAAGGAUGGCAGAUUUCUUUCCUUUCUGGAGAAUGAUGAUUGGAAACUCAUUGAAAACAAUGACACCAUUUUAGAAAGCACCCAGCCAGUUGAUGAAUUAGAAGGCAGAUACUUUCAGGUUGAGGUUGAGAAAAGAAUGGUCCCCAGUGCAGCAGCUUCUCAGAAUCCUGAGUCAGAGAAAAGAAACACCUGUGUGUUGAGAGAACAAAUCGUGGCUCAGUACCCCAGUUUGAAAAGAGAAAGUGAAAAAAUCAUUGAAAACUUCAAGAAAAAAAUGAAAGUAAAAAAUGGGGAAACAUUAUUUGAAUUGCAUAGAACAACGUUUGGGAAAGUAACAAAAAAUUCUUCUUCGAUUAAAGUAGUGAAACUUCUUGUACGUCUCAGUGЖCUCAGUUGGGUACUUAUUCUGGGЖCAGUGCAACUACGGGUUACGCCACCUGCUUUGUUUUUAAAGGЖUUGUUCAUUUUAACUUGUCGGCAUGUAAUAGAUAGCAUUGUGGGAGACGGAAUAGAGCCAAGUAAGUGGGCAACCAUAAUUGGUCAAUGUGUAAGGGUGACAUUUGGUUAUGAAGAGCUAAAAGACAAGGAAACAAACUACUUUUUUGUUGAЖCCUUGGUUUGAGAUACAUAAUGAAGAGCUUGACUAUGCUGUCCUGAAACUGAAGGAAAAUGGЖCAACAAGUACCUAUGGAЖCUAUAUAAUGGAAUUACUCCUGUGCCACUUAGUGGGUUGAUACAUAUUAUUGGCCAUCCAUAUGGAGAAAAAAAGCAGAUUGAUGCUUGUGCUGUGAUCCCUCAGGGUCAGCGAGCAAAGAAAUGUCAGGAACGUGUUCAGUCUAAAAAAGCAGAAAGUCCAGAGUAUGUCCAUAUGUAUACUCAAAGAAGUUUCCAGAAAAUAGUUCACAACCCUGAUGUGAUUACCUAUGACACUGAAUUUUUCUUUGGGGCUUCCGGCUCCCCUGUGUUUGAUUCAAAAGGUUCAUUGGUGGCCAUGCAUGCUGCUGGCUUUGCUUAUACUUACCAAAAUGAGЖCUCGUAGUAUCAUUGAGUUUGGCUCUACCAUGGAAUCCAUCCUCCUUGAUAUUAAGCAAAGACAUAAACCAUGGUAUGAAGAAGUAUUUGUAAAUCAGCAGGAUGUAGAAAUGAUGAGUGAUGAGGACUUGUGA
Sequence (SHORT NAMES ENCODING) UCCCGCCCAGCUGGAGCUCUGGAGCCUUUGCUUCCUCAAAUACGAGCGGGAACUGCGUUGAGCGCUGGAUUCCAGGCCGAGUGCUGGCGAGGCGCGCAUGUUUCAGCUGAACCAUCCGUUCAUCUUCAAGCCAUCAUGAGCUGUAAGAAGCAGAGGUCACGGAAGCACUCAGUCAAUGAAAAAUGUAAUAUGAAAAUCGAGCACUAUUUUUCUCCGGUCUCUAAAGAGCAACAGAAUAAUUGCAGUACUUCUCUAAUGAGGAUGGAGUCUAGAGGAGACCCAAGAGCCACAACUAAUACCCAGGCUCAAAGAUUCCAUUCACCUAAGAAAAAUCCAGAAGACCAGACCAUGCCCCAAAAUAGGACAAUAUAUGUUACCUUGAAGGUAAACCACAGGAGAAACCAAGAUAUGAAACUUAAGCUCACACAUAGUGAGAAUAGUAGCUUAUAUAUGGCUCUCAACACUCUCCAGGCUGUCAGAAAAGAGAUAGAAACUCACCAAGGCCAAGAAAUGCUUGUGCGUGGCACAGAAGGAAUCAAAGAGUACAUAAACCUUGGAAUGCCCCUCAGUUGUUUCCCUGAAGGUGGCCAGGUGGUCAUUACAUUUUCCCAAAGUAAAAGUAAGCAGAAGGAAGAUAACCACAUAUUUGGCAGGCAGGACAAAGCAUCGACUGAAUGUGUCAAAUUUUACAUUCAUGCAAUUGGAAUUGGGAAGUGUAAAAGAAGGAUUGUUAAAUGUGGGAAGCUUCACAAAAAGGGGCGCAAACUCUGUGUUUAUGCUUUCAAAGGAGAAACCAUCAAGGAUGCACUGUGCAAGGAUGGCAGAUUUCUUUCCUUUCUGGAGAAUGAUGAUUGGAAACUCAUUGAAAACAAUGACACCAUUUUAGAAAGCACCCAGCCAGUUGAUGAAUUAGAAGGCAGAUACUUUCAGGUUGAGGUUGAGAAAAGAAUGGUCCCCAGUGCAGCAGCUUCUCAGAAUCCUGAGUCAGAGAAAAGAAACACCUGUGUGUUGAGAGAACAAAUCGUGGCUCAGUACCCCAGUUUGAAAAGAGAAAGUGAAAAAAUCAUUGAAAACUUCAAGAAAAAAAUGAAAGUAAAAAAUGGGGAAACAUUAUUUGAAUUGCAUAGAACAACGUUUGGGAAAGUAACAAAAAAUUCUUCUUCGAUUAAAGUAGUGAAACUUCUUGUACGUCUCAGUGm6ACUCAGUUGGGUACUUAUUCUGGGm6ACAGUGCAACUACGGGUUACGCCACCUGCUUUGUUUUUAAAGGm6AUUGUUCAUUUUAACUUGUCGGCAUGUAAUAGAUAGCAUUGUGGGAGACGGAAUAGAGCCAAGUAAGUGGGCAACCAUAAUUGGUCAAUGUGUAAGGGUGACAUUUGGUUAUGAAGAGCUAAAAGACAAGGAAACAAACUACUUUUUUGUUGAm6ACCUUGGUUUGAGAUACAUAAUGAAGAGCUUGACUAUGCUGUCCUGAAACUGAAGGAAAAUGGm6ACAACAAGUACCUAUGGAm6ACUAUAUAAUGGAAUUACUCCUGUGCCACUUAGUGGGUUGAUACAUAUUAUUGGCCAUCCAUAUGGAGAAAAAAAGCAGAUUGAUGCUUGUGCUGUGAUCCCUCAGGGUCAGCGAGCAAAGAAAUGUCAGGAACGUGUUCAGUCUAAAAAAGCAGAAAGUCCAGAGUAUGUCCAUAUGUAUACUCAAAGAAGUUUCCAGAAAAUAGUUCACAACCCUGAUGUGAUUACCUAUGACACUGAAUUUUUCUUUGGGGCUUCCGGCUCCCCUGUGUUUGAUUCAAAAGGUUCAUUGGUGGCCAUGCAUGCUGCUGGCUUUGCUUAUACUUACCAAAAUGAGm6ACUCGUAGUAUCAUUGAGUUUGGCUCUACCAUGGAAUCCAUCCUCCUUGAUAUUAAGCAAAGACAUAAACCAUGGUAUGAAGAAGUAUUUGUAAAUCAGCAGGAUGUAGAAAUGAUGAGUGAUGAGGACUUGUGA
Sequence (MODOMICS CODE ENCODING) UCCCGCCCAGCUGGAGCUCUGGAGCCUUUGCUUCCUCAAAUACGAGCGGGAACUGCGUUGAGCGCUGGAUUCCAGGCCGAGUGCUGGCGAGGCGCGCAUGUUUCAGCUGAACCAUCCGUUCAUCUUCAAGCCAUCAUGAGCUGUAAGAAGCAGAGGUCACGGAAGCACUCAGUCAAUGAAAAAUGUAAUAUGAAAAUCGAGCACUAUUUUUCUCCGGUCUCUAAAGAGCAACAGAAUAAUUGCAGUACUUCUCUAAUGAGGAUGGAGUCUAGAGGAGACCCAAGAGCCACAACUAAUACCCAGGCUCAAAGAUUCCAUUCACCUAAGAAAAAUCCAGAAGACCAGACCAUGCCCCAAAAUAGGACAAUAUAUGUUACCUUGAAGGUAAACCACAGGAGAAACCAAGAUAUGAAACUUAAGCUCACACAUAGUGAGAAUAGUAGCUUAUAUAUGGCUCUCAACACUCUCCAGGCUGUCAGAAAAGAGAUAGAAACUCACCAAGGCCAAGAAAUGCUUGUGCGUGGCACAGAAGGAAUCAAAGAGUACAUAAACCUUGGAAUGCCCCUCAGUUGUUUCCCUGAAGGUGGCCAGGUGGUCAUUACAUUUUCCCAAAGUAAAAGUAAGCAGAAGGAAGAUAACCACAUAUUUGGCAGGCAGGACAAAGCAUCGACUGAAUGUGUCAAAUUUUACAUUCAUGCAAUUGGAAUUGGGAAGUGUAAAAGAAGGAUUGUUAAAUGUGGGAAGCUUCACAAAAAGGGGCGCAAACUCUGUGUUUAUGCUUUCAAAGGAGAAACCAUCAAGGAUGCACUGUGCAAGGAUGGCAGAUUUCUUUCCUUUCUGGAGAAUGAUGAUUGGAAACUCAUUGAAAACAAUGACACCAUUUUAGAAAGCACCCAGCCAGUUGAUGAAUUAGAAGGCAGAUACUUUCAGGUUGAGGUUGAGAAAAGAAUGGUCCCCAGUGCAGCAGCUUCUCAGAAUCCUGAGUCAGAGAAAAGAAACACCUGUGUGUUGAGAGAACAAAUCGUGGCUCAGUACCCCAGUUUGAAAAGAGAAAGUGAAAAAAUCAUUGAAAACUUCAAGAAAAAAAUGAAAGUAAAAAAUGGGGAAACAUUAUUUGAAUUGCAUAGAACAACGUUUGGGAAAGUAACAAAAAAUUCUUCUUCGAUUAAAGUAGUGAAACUUCUUGUACGUCUCAGUG2000000006ACUCAGUUGGGUACUUAUUCUGGG2000000006ACAGUGCAACUACGGGUUACGCCACCUGCUUUGUUUUUAAAGG2000000006AUUGUUCAUUUUAACUUGUCGGCAUGUAAUAGAUAGCAUUGUGGGAGACGGAAUAGAGCCAAGUAAGUGGGCAACCAUAAUUGGUCAAUGUGUAAGGGUGACAUUUGGUUAUGAAGAGCUAAAAGACAAGGAAACAAACUACUUUUUUGUUGA2000000006ACCUUGGUUUGAGAUACAUAAUGAAGAGCUUGACUAUGCUGUCCUGAAACUGAAGGAAAAUGG2000000006ACAACAAGUACCUAUGGA2000000006ACUAUAUAAUGGAAUUACUCCUGUGCCACUUAGUGGGUUGAUACAUAUUAUUGGCCAUCCAUAUGGAGAAAAAAAGCAGAUUGAUGCUUGUGCUGUGAUCCCUCAGGGUCAGCGAGCAAAGAAAUGUCAGGAACGUGUUCAGUCUAAAAAAGCAGAAAGUCCAGAGUAUGUCCAUAUGUAUACUCAAAGAAGUUUCCAGAAAAUAGUUCACAACCCUGAUGUGAUUACCUAUGACACUGAAUUUUUCUUUGGGGCUUCCGGCUCCCCUGUGUUUGAUUCAAAAGGUUCAUUGGUGGCCAUGCAUGCUGCUGGCUUUGCUUAUACUUACCAAAAUGAG2000000006ACUCGUAGUAUCAUUGAGUUUGGCUCUACCAUGGAAUCCAUCCUCCUUGAUAUUAAGCAAAGACAUAAACCAUGGUAUGAAGAAGUAUUUGUAAAUCAGCAGGAUGUAGAAAUGAUGAGUGAUGAGGACUUGUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1199 1223 1266 1419 1482 1500 1837
Modification Positions m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 11:59152732:+ 11:59152756:+ 11:59152799:+ 11:59152952:+ 11:59153015:+ 11:59153033:+ 11:59153370:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 5FhTyQVy2tKW
KRfQJWH4K5KH
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
UKen6WEino9G
5FhTyQVy2tKW
6UuHp6YApVKv
VL7zkHvkfkoB
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
UKen6WEino9G
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
aJksAshEgQ8U
8cMbzB4aD5Se
Lny8GcCeVGc9
jNkxUQNx8GRd
VL7zkHvkfkoB
WdHxkJGRmFxn
aJksAshEgQ8U
Lny8GcCeVGc9
UKen6WEino9G
VL7zkHvkfkoB
WdHxkJGRmFxn
Lny8GcCeVGc9
UKen6WEino9G
VL7zkHvkfkoB
WdHxkJGRmFxn
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G