General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000354497
Gene ID:	ENSG00000133318
Gene Name:	RTN3
Sequence (UNICHARACTER ENCODING)	UUCCCCUCCCUCUCUCCCGCCCCGUAUCUCUUUUCACCCUUCUCCCACCCUCGCUCGCGUAGCCAUGGCGGAGCCGUCGGCGGCCACUCAGUCCCAUUCCAUCUCCUCGUCGUCCUUCGGAGCCGAGCCGUCCGCGCCCGGCGGCGGCGGGAGCCCAGGAGCCUGCCCCGCCCUGGGGACGAAGAGCUGCAGCUCCUCCUGUGCGGUGCACGAUCUGAUUUUCUGGAGAGAUGUGAAGAAGACUGGGUUUGUCUUUGGCACCACGCUGAUCAUGCUGCUUUCCCUGGCAGCUUUCAGUGUCAUCAGUGUGGUUUCUUACCUCAPCCUGGCUCUUCUCUCUGUCACCAUCAGCUUCAGGAUCUACЖAGUCCGUCAPCCAAGCUGUACAGAAGUCAGAAGAAGGCCAUCCAUUCAAACCCAGAUUGAUCACUAUGUUGGCAUCGCCCGAGAUCAGACCAAGUCAAUUGUUGAAAAGAUCCAAGCAAAACUCCCUGGAAUCGCCAAAAAAAAGGCAGAAUAAGUACAUGGAAACCAGAAAUGCAACAGUUACUAAAACACCAUUUAAUAGUUAUAACGUCGUUACUUGUACUAUGAAGGAAAAUACUCAGUGUCAGCUUGAGCCUGCAUUCCAAGCUUUUUUUUUAAUUUGGUGUUUUCUCCCAPCCUUUCCCUPUAACCCUCAGUAUCAAGCACAAAAAUUGAUGGЖCUGAUAAAAGAACUAUCUUAGAACUCAGAAGAAGAAAGAAUCAAAUUCAUAGGAUAAGUCAAUACCUUAAUGGUGGUAGAGCCUPUACCUGUAGCUUGAAAGGGGAAAGAUUGGAGGUAAGAGAGAAAAUGAAAGAACACCUCUGGGUCCUUCUGUCCAGUUUUCAGCACUAGUCUUACUCAGCUAUCCAUUAUAGUUUUGCCCUUAAGAAGUCAUGAUUAЖCUUAUGAAAAAAUUAUUUGGGGACAGGAGUGUGAUACCUUCCUUGGUUUUUUUUUGCAGCCCUCAAAUCCUAUCUUCCUGCCCCACAAUGUGAGCAGCUACCCCUGAUACUCCUUUUCUUUAAUGAUUUAACUAUCAACUUGAUAAAUAЖCUUAUAGGUGAUAGUGAUAAUUCCUGAUUCCAAGAAUGCCAUCUGAUAAAAAAGAAUAGAAAUGGAAAGUGGGACUGAGAGGGAGUCAGCAGGCAUGCUGCGGUGGCGGUCACUCCCUCUGCCACUAUCCC?AGGGAAGGAAAGGCUCCGCCAUUUGGGAAAGUGGUUUCUACGUCACUGGACACCGGUUCUGAGCAUUAGUUUGAGAACUCGUUCCCGAAUGUGCUUUCCPCCCUCUCCCCUGCCCACCUCAAGUUUAAUAAAUAAGGUUGUACUUUUCUUACUAUAAAAUAAAUGUCUGUAACUGCUGUGCACUGCUGUAAACUUGUU
Sequence (SHORT NAMES ENCODING)	UUCCCCUCCCUCUCUCCCGCCCCGUAUCUCUUUUCACCCUUCUCCCACCCUCGCUCGCGUAGCCAUGGCGGAGCCGUCGGCGGCCACUCAGUCCCAUUCCAUCUCCUCGUCGUCCUUCGGAGCCGAGCCGUCCGCGCCCGGCGGCGGCGGGAGCCCAGGAGCCUGCCCCGCCCUGGGGACGAAGAGCUGCAGCUCCUCCUGUGCGGUGCACGAUCUGAUUUUCUGGAGAGAUGUGAAGAAGACUGGGUUUGUCUUUGGCACCACGCUGAUCAUGCUGCUUUCCCUGGCAGCUUUCAGUGUCAUCAGUGUGGUUUCUUACCUCAYCCUGGCUCUUCUCUCUGUCACCAUCAGCUUCAGGAUCUACm6AAGUCCGUCAYCCAAGCUGUACAGAAGUCAGAAGAAGGCCAUCCAUUCAAACCCAGAUUGAUCACUAUGUUGGCAUCGCCCGAGAUCAGACCAAGUCAAUUGUUGAAAAGAUCCAAGCAAAACUCCCUGGAAUCGCCAAAAAAAAGGCAGAAUAAGUACAUGGAAACCAGAAAUGCAACAGUUACUAAAACACCAUUUAAUAGUUAUAACGUCGUUACUUGUACUAUGAAGGAAAAUACUCAGUGUCAGCUUGAGCCUGCAUUCCAAGCUUUUUUUUUAAUUUGGUGUUUUCUCCCAYCCUUUCCCUYUAACCCUCAGUAUCAAGCACAAAAAUUGAUGGm6ACUGAUAAAAGAACUAUCUUAGAACUCAGAAGAAGAAAGAAUCAAAUUCAUAGGAUAAGUCAAUACCUUAAUGGUGGUAGAGCCUYUACCUGUAGCUUGAAAGGGGAAAGAUUGGAGGUAAGAGAGAAAAUGAAAGAACACCUCUGGGUCCUUCUGUCCAGUUUUCAGCACUAGUCUUACUCAGCUAUCCAUUAUAGUUUUGCCCUUAAGAAGUCAUGAUUAm6ACUUAUGAAAAAAUUAUUUGGGGACAGGAGUGUGAUACCUUCCUUGGUUUUUUUUUGCAGCCCUCAAAUCCUAUCUUCCUGCCCCACAAUGUGAGCAGCUACCCCUGAUACUCCUUUUCUUUAAUGAUUUAACUAUCAACUUGAUAAAUAm6ACUUAUAGGUGAUAGUGAUAAUUCCUGAUUCCAAGAAUGCCAUCUGAUAAAAAAGAAUAGAAAUGGAAAGUGGGACUGAGAGGGAGUCAGCAGGCAUGCUGCGGUGGCGGUCACUCCCUCUGCCACUAUCCCm5CAGGGAAGGAAAGGCUCCGCCAUUUGGGAAAGUGGUUUCUACGUCACUGGACACCGGUUCUGAGCAUUAGUUUGAGAACUCGUUCCCGAAUGUGCUUUCCYCCCUCUCCCCUGCCCACCUCAAGUUUAAUAAAUAAGGUUGUACUUUUCUUACUAUAAAAUAAAUGUCUGUAACUGCUGUGCACUGCUGUAAACUUGUU
Sequence (MODOMICS CODE ENCODING)	UUCCCCUCCCUCUCUCCCGCCCCGUAUCUCUUUUCACCCUUCUCCCACCCUCGCUCGCGUAGCCAUGGCGGAGCCGUCGGCGGCCACUCAGUCCCAUUCCAUCUCCUCGUCGUCCUUCGGAGCCGAGCCGUCCGCGCCCGGCGGCGGCGGGAGCCCAGGAGCCUGCCCCGCCCUGGGGACGAAGAGCUGCAGCUCCUCCUGUGCGGUGCACGAUCUGAUUUUCUGGAGAGAUGUGAAGAAGACUGGGUUUGUCUUUGGCACCACGCUGAUCAUGCUGCUUUCCCUGGCAGCUUUCAGUGUCAUCAGUGUGGUUUCUUACCUCA2000000009UCCUGGCUCUUCUCUCUGUCACCAUCAGCUUCAGGAUCUAC2000000006AAGUCCGUCA2000000009UCCAAGCUGUACAGAAGUCAGAAGAAGGCCAUCCAUUCAAACCCAGAUUGAUCACUAUGUUGGCAUCGCCCGAGAUCAGACCAAGUCAAUUGUUGAAAAGAUCCAAGCAAAACUCCCUGGAAUCGCCAAAAAAAAGGCAGAAUAAGUACAUGGAAACCAGAAAUGCAACAGUUACUAAAACACCAUUUAAUAGUUAUAACGUCGUUACUUGUACUAUGAAGGAAAAUACUCAGUGUCAGCUUGAGCCUGCAUUCCAAGCUUUUUUUUUAAUUUGGUGUUUUCUCCCA2000000009UCCUUUCCCU2000000009UUAACCCUCAGUAUCAAGCACAAAAAUUGAUGG2000000006ACUGAUAAAAGAACUAUCUUAGAACUCAGAAGAAGAAAGAAUCAAAUUCAUAGGAUAAGUCAAUACCUUAAUGGUGGUAGAGCCU2000000009UUACCUGUAGCUUGAAAGGGGAAAGAUUGGAGGUAAGAGAGAAAAUGAAAGAACACCUCUGGGUCCUUCUGUCCAGUUUUCAGCACUAGUCUUACUCAGCUAUCCAUUAUAGUUUUGCCCUUAAGAAGUCAUGAUUA2000000006ACUUAUGAAAAAAUUAUUUGGGGACAGGAGUGUGAUACCUUCCUUGGUUUUUUUUUGCAGCCCUCAAAUCCUAUCUUCCUGCCCCACAAUGUGAGCAGCUACCCCUGAUACUCCUUUUCUUUAAUGAUUUAACUAUCAACUUGAUAAAUA2000000006ACUUAUAGGUGAUAGUGAUAAUUCCUGAUUCCAAGAAUGCCAUCUGAUAAAAAAGAAUAGAAAUGGAAAGUGGGACUGAGAGGGAGUCAGCAGGCAUGCUGCGGUGGCGGUCACUCCCUCUGCCACUAUCCC2000000005CAGGGAAGGAAAGGCUCCGCCAUUUGGGAAAGUGGUUUCUACGUCACUGGACACCGGUUCUGAGCAUUAGUUUGAGAACUCGUUCCCGAAUGUGCUUUCC2000000009UCCCUCUCCCCUGCCCACCUCAAGUUUAAUAAAUAAGGUUGUACUUUUCUUACUAUAAAAUAAAUGUCUGUAACUGCUGUGCACUGCUGUAAACUUGUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	324	365	375	662	672	705	790	927	1077	1209	1309
Modification Positions	Y	m6A	Y	Y	Y	m6A	Y	m6A	m6A	m5C	Y
Genomic Coordinates	11:63750108:+	11:63750149:+	11:63750159:+	11:63758344:+	11:63758354:+	11:63758387:+	11:63758472:+	11:63758609:+	11:63758759:+	11:63758891:+	11:63758991:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4HMi5ykupT9V 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML 834aFpha8RvT dA7YoLwHrzgR JASnTTw2HeNE ksEP666umrV9 NKGM8wdLLrnu ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	4RW3xrzJ5VQa Er3yHVFp6tX8 JBTYPMm6qNsy KyXZuxKVckYS 4Hod8ruppnD2 5tjPWDS39J3i 9De2LACts9mj BnpqjwVeTStU bvmqLAbo2zqf mNhhJTdKpjtR	BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE Mk6ShCGm6RBJ oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8