General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000407365
Gene ID:	ENSG00000065882
Gene Name:	TBC1D1
Sequence (UNICHARACTER ENCODING)	ACAGCUGUUCCCCAGCCUGGUAGUGAACCCAGAGGCCUGUCUUGCUGUGCAGUGGGACAGGAAGUUGCAUUUGGGAGUCUCAUAGAACACACUGGAAGAUGUGUUUUAGCUUGGCCAGUUUCAUGCAGGACAGAUUUUCUGCAUAAAGAAAAUCAAUGACAGUUUCUGAAACUGCAUCCUGGAAGCCUUGACCAGUUUGGGGCGAACCUUUCCUACACACCCAUACUUCUCUGCCCAGCUUGGAGCAGGACAGCUAUCGCUUUACЖACAUUUUGAAGGCCUACUCACUUCUAGACCAGGAAGUGGGAUAUUGCCAAGGUCUCAGCUUUGUAGCAGGCAUUUUGCUUCUUCAUAUGAGUGAGGAAGAGGCGUUUAAAAUGCUCAAGUUUCUGAUGUUUGACAUGGGGCUGCGGAAACAGUAUCGGCCAGACAUGAUUAUUUUACAGAUCCAGAUGUACCAGCUCUCGAGGUUGCUUCAUGAUUACCACAGAGACCUCUACAAUCACCUGGAGGAGCACGAGAUCGGCCCCAGCCUCUACGCUGCCCCCUGGUUCCUCACCAUGUUUGCCUCACAGUUCCCGCUGGGAUUCGUAGCCAGAGUCUUUGAUAUGAUUUUUCUUCAGGGAACAGAGGUCAUAUUUAAAGUGGCUPUAAGUCUGUUGGGAAGCCAPAAGCCCUUGAUUCUGCAGCAUGAAAACCUAGAAACCAUAGUUGACUPUAUAAAAAGCACGCUACCCAACCUUGGCUUGGUACAGAUGGAAAAGACCAUCAAUCAGGUAUUUGAAAUGGACAUCGCUAAЖCAGUUACAAGCUUAUGAAGUUGAGUACCACGUCCUUCAAGAAGAACUUAUCGAUUCCUCUCCUCUCAGUGACAACCAAAGAAUGGAUAAAUUAGAGAAAACCAACAGCAGCUUACGCAAЖCAGAACCUUGACCUCCUUGAACAGUUGCAGGUGGCAAAUGGUAGGAUCCAAAGCCUUGAGGCCACCAUUGAGAAGCUCCUGAGCAGUGAGAGCAAGCUGAAGCAGGCCAUGCUUACCUUAGAACUGGAGCGGUCGGCCCUGCUGCAGACGGUGGAGGAGCUGCGGCGGCGGAGCGCAGAGCCCAGCGACCGGGAGCCUGAGUGCACGCAGCCCGAGCCCACGGGCGACUGACAGCUCUGCAGGAGAGAUUGCAACACCAPCCCACACUGUCCAGGCCUUAACUGAGAGGGACAGAAGACGCUGGAAGGAGAGAAGGAAGCGGGAAGUGUGCUUCUCAGGGAGGAAACCGGCUUGCCAGCAAGUAGAUUCUUACGAЖCUCCAACUUGCAAUUCAGGGGGCAUGUCCCAGUGUUUUUUUUGUUGUUUUUAGAUACUAAAUCGUCCCUUCUCCAGUCCUGAUUACUGUACACAGUAGCUPUAGAUGGCGUGGACGUGAAUAAAUGCAACUUAUGUUUUCUUGUUGGUUCCUUUUUGAGUGUCACUGUGUUUGUAAAGAGCAUUCACAAUACGGUGGAAUUUCAAAAGCUGGAAGAGCUCGAGAUCAUGCCUCAGGCAAAGGCGUGGGUCCAUCGUUCUUCCGAGAGGGUUUGUGUGGCGACUACACCCUCAGCGUCCCUGGCAAGGUGCAGUUGGCUCUCGCCCAUUCUUGUUAUGGAAACCUAAGAUGAUCAUUGGGAAGAUCAGUGAUCUUGGGUCAUUGAUCCCUGGCUCAGAGGAUAGCGGUUUCCAUCAUAAACCAAGAUGAUGAGUUCAGCCUUUAUCCCUCGUGGUUCCACUAGAUGUAACUUAAAGGAGUUAACAUUUGAGGЖCUUUGUUCUACAUCAGAUUUUACUAUUUGAAUGUUUAAGAUCACUUUAUUGAAUUUGAAGAUCAUCAAAUUAAAUAAAAUGAUUUAUUUAAUUUGGAUAUCCUGAUCACUGUCAAGUGAAAUGGAUCUCUCUCUUUGGUAUUUAAGGAAGUUUGUCUUUAAAAAAAAAAUAGAGUGUUUUCAUACAUUUUUGCUUAUCCCAUAAGUACAGUUGAUCAAAGUCAUAGUAGGUAAAUGCUUUAUGGGACAGCUGACACCUUUUAGACCCUACCAGGUAUUGCUAGCAUGUGAGCUGCAGUUGUGGGGUCUGAGAUAUUUCUUUGUGGUAGUUUCAUACCCAUACUAUAGAGUCAUGUAUUUAUUUUUGCCUGUUGUGUGAUGUAAUGCAAUCAUGUUCCUUUGAGUCUCCAUCCCUUGGAAAUCUGACUUCUUGCAGAAGGAGUAGGCACAUCAAGAUAUUCAGGGGUGCCCCAAGAGUCUGGGACUUUCAAAAAAAAAAGAUCAGGCUGAAACUGCAGUCAGAUUUAUGACAGCUGACAGUUUUUCAGAGGUCGCACACAGUGACUCUCCUCUCUCAGGAUGACGAGGACCUGUGCCUUCAACAAGCAAAAUGCUGCUCACGGUUGUCCUGCUUGCAGCCAGUCACUGUGUAAAGCCUCUCUGAUGUGCACUUAAGAGUGGGUUGCUUUCUCACAAAGAUGGGGUUCUGUGCAGUCACAGGUCACUUCCUUGACAACACAAUCAUUUCUGAUCUUUAUCACUGUAACCACGUCUUCUAUUCCAUAGGAGUUUCUUUUGAUUCUCUCAGUUGCGGGGGGCAUCUCUUAAUCCUGGGGUAAAAGGAGAGAUUGCCAUACUUAGACUCACUGUGAGUCUCCCCGGCCAUUUCACGAGGAGACCACAGUGCUGCCACCAGUGCCUAAACAGGUGGCUGGCAUUCGAGACUUCCUCCUGUUCCCUGGGUCAGAGGAUAGCGGUUUCCAUCAUAAACCAAGAUGAUGAGUUCAGCCUUUAUCCCUCGUGGUUCCGCUAGAUGUAACUUAUAGGAGUUAACAUUUGAGGACUUUGUUCUGCAUCAGAUCUUACUAUUUGAAUGUUUACUGUUGGAUUUUGGGCAUCUUAUUACUGUUACUCAAAAACAUUGACUCUGCAUCAAGAAAGAAACAAGAAAGCAAUAAAACAAGAAAUAAUUCAUGCUCACAUU
Sequence (SHORT NAMES ENCODING)	ACAGCUGUUCCCCAGCCUGGUAGUGAACCCAGAGGCCUGUCUUGCUGUGCAGUGGGACAGGAAGUUGCAUUUGGGAGUCUCAUAGAACACACUGGAAGAUGUGUUUUAGCUUGGCCAGUUUCAUGCAGGACAGAUUUUCUGCAUAAAGAAAAUCAAUGACAGUUUCUGAAACUGCAUCCUGGAAGCCUUGACCAGUUUGGGGCGAACCUUUCCUACACACCCAUACUUCUCUGCCCAGCUUGGAGCAGGACAGCUAUCGCUUUACm6AACAUUUUGAAGGCCUACUCACUUCUAGACCAGGAAGUGGGAUAUUGCCAAGGUCUCAGCUUUGUAGCAGGCAUUUUGCUUCUUCAUAUGAGUGAGGAAGAGGCGUUUAAAAUGCUCAAGUUUCUGAUGUUUGACAUGGGGCUGCGGAAACAGUAUCGGCCAGACAUGAUUAUUUUACAGAUCCAGAUGUACCAGCUCUCGAGGUUGCUUCAUGAUUACCACAGAGACCUCUACAAUCACCUGGAGGAGCACGAGAUCGGCCCCAGCCUCUACGCUGCCCCCUGGUUCCUCACCAUGUUUGCCUCACAGUUCCCGCUGGGAUUCGUAGCCAGAGUCUUUGAUAUGAUUUUUCUUCAGGGAACAGAGGUCAUAUUUAAAGUGGCUYUAAGUCUGUUGGGAAGCCAYAAGCCCUUGAUUCUGCAGCAUGAAAACCUAGAAACCAUAGUUGACUYUAUAAAAAGCACGCUACCCAACCUUGGCUUGGUACAGAUGGAAAAGACCAUCAAUCAGGUAUUUGAAAUGGACAUCGCUAAm6ACAGUUACAAGCUUAUGAAGUUGAGUACCACGUCCUUCAAGAAGAACUUAUCGAUUCCUCUCCUCUCAGUGACAACCAAAGAAUGGAUAAAUUAGAGAAAACCAACAGCAGCUUACGCAAm6ACAGAACCUUGACCUCCUUGAACAGUUGCAGGUGGCAAAUGGUAGGAUCCAAAGCCUUGAGGCCACCAUUGAGAAGCUCCUGAGCAGUGAGAGCAAGCUGAAGCAGGCCAUGCUUACCUUAGAACUGGAGCGGUCGGCCCUGCUGCAGACGGUGGAGGAGCUGCGGCGGCGGAGCGCAGAGCCCAGCGACCGGGAGCCUGAGUGCACGCAGCCCGAGCCCACGGGCGACUGACAGCUCUGCAGGAGAGAUUGCAACACCAYCCCACACUGUCCAGGCCUUAACUGAGAGGGACAGAAGACGCUGGAAGGAGAGAAGGAAGCGGGAAGUGUGCUUCUCAGGGAGGAAACCGGCUUGCCAGCAAGUAGAUUCUUACGAm6ACUCCAACUUGCAAUUCAGGGGGCAUGUCCCAGUGUUUUUUUUGUUGUUUUUAGAUACUAAAUCGUCCCUUCUCCAGUCCUGAUUACUGUACACAGUAGCUYUAGAUGGCGUGGACGUGAAUAAAUGCAACUUAUGUUUUCUUGUUGGUUCCUUUUUGAGUGUCACUGUGUUUGUAAAGAGCAUUCACAAUACGGUGGAAUUUCAAAAGCUGGAAGAGCUCGAGAUCAUGCCUCAGGCAAAGGCGUGGGUCCAUCGUUCUUCCGAGAGGGUUUGUGUGGCGACUACACCCUCAGCGUCCCUGGCAAGGUGCAGUUGGCUCUCGCCCAUUCUUGUUAUGGAAACCUAAGAUGAUCAUUGGGAAGAUCAGUGAUCUUGGGUCAUUGAUCCCUGGCUCAGAGGAUAGCGGUUUCCAUCAUAAACCAAGAUGAUGAGUUCAGCCUUUAUCCCUCGUGGUUCCACUAGAUGUAACUUAAAGGAGUUAACAUUUGAGGm6ACUUUGUUCUACAUCAGAUUUUACUAUUUGAAUGUUUAAGAUCACUUUAUUGAAUUUGAAGAUCAUCAAAUUAAAUAAAAUGAUUUAUUUAAUUUGGAUAUCCUGAUCACUGUCAAGUGAAAUGGAUCUCUCUCUUUGGUAUUUAAGGAAGUUUGUCUUUAAAAAAAAAAUAGAGUGUUUUCAUACAUUUUUGCUUAUCCCAUAAGUACAGUUGAUCAAAGUCAUAGUAGGUAAAUGCUUUAUGGGACAGCUGACACCUUUUAGACCCUACCAGGUAUUGCUAGCAUGUGAGCUGCAGUUGUGGGGUCUGAGAUAUUUCUUUGUGGUAGUUUCAUACCCAUACUAUAGAGUCAUGUAUUUAUUUUUGCCUGUUGUGUGAUGUAAUGCAAUCAUGUUCCUUUGAGUCUCCAUCCCUUGGAAAUCUGACUUCUUGCAGAAGGAGUAGGCACAUCAAGAUAUUCAGGGGUGCCCCAAGAGUCUGGGACUUUCAAAAAAAAAAGAUCAGGCUGAAACUGCAGUCAGAUUUAUGACAGCUGACAGUUUUUCAGAGGUCGCACACAGUGACUCUCCUCUCUCAGGAUGACGAGGACCUGUGCCUUCAACAAGCAAAAUGCUGCUCACGGUUGUCCUGCUUGCAGCCAGUCACUGUGUAAAGCCUCUCUGAUGUGCACUUAAGAGUGGGUUGCUUUCUCACAAAGAUGGGGUUCUGUGCAGUCACAGGUCACUUCCUUGACAACACAAUCAUUUCUGAUCUUUAUCACUGUAACCACGUCUUCUAUUCCAUAGGAGUUUCUUUUGAUUCUCUCAGUUGCGGGGGGCAUCUCUUAAUCCUGGGGUAAAAGGAGAGAUUGCCAUACUUAGACUCACUGUGAGUCUCCCCGGCCAUUUCACGAGGAGACCACAGUGCUGCCACCAGUGCCUAAACAGGUGGCUGGCAUUCGAGACUUCCUCCUGUUCCCUGGGUCAGAGGAUAGCGGUUUCCAUCAUAAACCAAGAUGAUGAGUUCAGCCUUUAUCCCUCGUGGUUCCGCUAGAUGUAACUUAUAGGAGUUAACAUUUGAGGACUUUGUUCUGCAUCAGAUCUUACUAUUUGAAUGUUUACUGUUGGAUUUUGGGCAUCUUAUUACUGUUACUCAAAAACAUUGACUCUGCAUCAAGAAAGAAACAAGAAAGCAAUAAAACAAGAAAUAAUUCAUGCUCACAUU
Sequence (MODOMICS CODE ENCODING)	ACAGCUGUUCCCCAGCCUGGUAGUGAACCCAGAGGCCUGUCUUGCUGUGCAGUGGGACAGGAAGUUGCAUUUGGGAGUCUCAUAGAACACACUGGAAGAUGUGUUUUAGCUUGGCCAGUUUCAUGCAGGACAGAUUUUCUGCAUAAAGAAAAUCAAUGACAGUUUCUGAAACUGCAUCCUGGAAGCCUUGACCAGUUUGGGGCGAACCUUUCCUACACACCCAUACUUCUCUGCCCAGCUUGGAGCAGGACAGCUAUCGCUUUAC2000000006AACAUUUUGAAGGCCUACUCACUUCUAGACCAGGAAGUGGGAUAUUGCCAAGGUCUCAGCUUUGUAGCAGGCAUUUUGCUUCUUCAUAUGAGUGAGGAAGAGGCGUUUAAAAUGCUCAAGUUUCUGAUGUUUGACAUGGGGCUGCGGAAACAGUAUCGGCCAGACAUGAUUAUUUUACAGAUCCAGAUGUACCAGCUCUCGAGGUUGCUUCAUGAUUACCACAGAGACCUCUACAAUCACCUGGAGGAGCACGAGAUCGGCCCCAGCCUCUACGCUGCCCCCUGGUUCCUCACCAUGUUUGCCUCACAGUUCCCGCUGGGAUUCGUAGCCAGAGUCUUUGAUAUGAUUUUUCUUCAGGGAACAGAGGUCAUAUUUAAAGUGGCU2000000009UUAAGUCUGUUGGGAAGCCA2000000009UAAGCCCUUGAUUCUGCAGCAUGAAAACCUAGAAACCAUAGUUGACU2000000009UUAUAAAAAGCACGCUACCCAACCUUGGCUUGGUACAGAUGGAAAAGACCAUCAAUCAGGUAUUUGAAAUGGACAUCGCUAA2000000006ACAGUUACAAGCUUAUGAAGUUGAGUACCACGUCCUUCAAGAAGAACUUAUCGAUUCCUCUCCUCUCAGUGACAACCAAAGAAUGGAUAAAUUAGAGAAAACCAACAGCAGCUUACGCAA2000000006ACAGAACCUUGACCUCCUUGAACAGUUGCAGGUGGCAAAUGGUAGGAUCCAAAGCCUUGAGGCCACCAUUGAGAAGCUCCUGAGCAGUGAGAGCAAGCUGAAGCAGGCCAUGCUUACCUUAGAACUGGAGCGGUCGGCCCUGCUGCAGACGGUGGAGGAGCUGCGGCGGCGGAGCGCAGAGCCCAGCGACCGGGAGCCUGAGUGCACGCAGCCCGAGCCCACGGGCGACUGACAGCUCUGCAGGAGAGAUUGCAACACCA2000000009UCCCACACUGUCCAGGCCUUAACUGAGAGGGACAGAAGACGCUGGAAGGAGAGAAGGAAGCGGGAAGUGUGCUUCUCAGGGAGGAAACCGGCUUGCCAGCAAGUAGAUUCUUACGA2000000006ACUCCAACUUGCAAUUCAGGGGGCAUGUCCCAGUGUUUUUUUUGUUGUUUUUAGAUACUAAAUCGUCCCUUCUCCAGUCCUGAUUACUGUACACAGUAGCU2000000009UUAGAUGGCGUGGACGUGAAUAAAUGCAACUUAUGUUUUCUUGUUGGUUCCUUUUUGAGUGUCACUGUGUUUGUAAAGAGCAUUCACAAUACGGUGGAAUUUCAAAAGCUGGAAGAGCUCGAGAUCAUGCCUCAGGCAAAGGCGUGGGUCCAUCGUUCUUCCGAGAGGGUUUGUGUGGCGACUACACCCUCAGCGUCCCUGGCAAGGUGCAGUUGGCUCUCGCCCAUUCUUGUUAUGGAAACCUAAGAUGAUCAUUGGGAAGAUCAGUGAUCUUGGGUCAUUGAUCCCUGGCUCAGAGGAUAGCGGUUUCCAUCAUAAACCAAGAUGAUGAGUUCAGCCUUUAUCCCUCGUGGUUCCACUAGAUGUAACUUAAAGGAGUUAACAUUUGAGG2000000006ACUUUGUUCUACAUCAGAUUUUACUAUUUGAAUGUUUAAGAUCACUUUAUUGAAUUUGAAGAUCAUCAAAUUAAAUAAAAUGAUUUAUUUAAUUUGGAUAUCCUGAUCACUGUCAAGUGAAAUGGAUCUCUCUCUUUGGUAUUUAAGGAAGUUUGUCUUUAAAAAAAAAAUAGAGUGUUUUCAUACAUUUUUGCUUAUCCCAUAAGUACAGUUGAUCAAAGUCAUAGUAGGUAAAUGCUUUAUGGGACAGCUGACACCUUUUAGACCCUACCAGGUAUUGCUAGCAUGUGAGCUGCAGUUGUGGGGUCUGAGAUAUUUCUUUGUGGUAGUUUCAUACCCAUACUAUAGAGUCAUGUAUUUAUUUUUGCCUGUUGUGUGAUGUAAUGCAAUCAUGUUCCUUUGAGUCUCCAUCCCUUGGAAAUCUGACUUCUUGCAGAAGGAGUAGGCACAUCAAGAUAUUCAGGGGUGCCCCAAGAGUCUGGGACUUUCAAAAAAAAAAGAUCAGGCUGAAACUGCAGUCAGAUUUAUGACAGCUGACAGUUUUUCAGAGGUCGCACACAGUGACUCUCCUCUCUCAGGAUGACGAGGACCUGUGCCUUCAACAAGCAAAAUGCUGCUCACGGUUGUCCUGCUUGCAGCCAGUCACUGUGUAAAGCCUCUCUGAUGUGCACUUAAGAGUGGGUUGCUUUCUCACAAAGAUGGGGUUCUGUGCAGUCACAGGUCACUUCCUUGACAACACAAUCAUUUCUGAUCUUUAUCACUGUAACCACGUCUUCUAUUCCAUAGGAGUUUCUUUUGAUUCUCUCAGUUGCGGGGGGCAUCUCUUAAUCCUGGGGUAAAAGGAGAGAUUGCCAUACUUAGACUCACUGUGAGUCUCCCCGGCCAUUUCACGAGGAGACCACAGUGCUGCCACCAGUGCCUAAACAGGUGGCUGGCAUUCGAGACUUCCUCCUGUUCCCUGGGUCAGAGGAUAGCGGUUUCCAUCAUAAACCAAGAUGAUGAGUUCAGCCUUUAUCCCUCGUGGUUCCGCUAGAUGUAACUUAUAGGAGUUAACAUUUGAGGACUUUGUUCUGCAUCAGAUCUUACUAUUUGAAUGUUUACUGUUGGAUUUUGGGCAUCUUAUUACUGUUACUCAAAAACAUUGACUCUGCAUCAAGAAAGAAACAAGAAAGCAAUAAAACAAGAAAUAAUUCAUGCUCACAUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	266	650	670	717	799	919	1179	1295	1396	1787
Modification Positions	m6A	Y	Y	Y	m6A	m6A	Y	m6A	Y	m6A
Genomic Coordinates	4:38115775:+	4:38125006:+	4:38125026:+	4:38125073:+	4:38133107:+	4:38133227:+	4:38137364:+	4:38137480:+	4:38137581:+	4:38137972:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3kRDPWwiRCgi L6w2k2VEv4EY	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	Lny8GcCeVGc9 UKen6WEino9G