General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000395080
Gene ID:	ENSG00000118785
Gene Name:	SPP1
Sequence (UNICHARACTER ENCODING)	AGCAGCAGGAGGAGGCAGAGCACAGCAUCGUCGGGACCAGACUCGUCUCAGGCCAGUUGCAGCCUUCUCAGCCAAACGCCGACCAAGGAAAACUCACUACCAUGAGAAUUGCAGUGAUPUGCUUUUGCCUCCUAGGCAUCACCUGUGCCAUACCAGUUAAACAGGCUGAUUCUGGAAGUUCUGAGGAAAAGCAGCUPUACAACAAAUACCCAGAUGCUGUGGCCACAUGGCUAAACCCUGACCCAUCUCAGAAGCAGAAUCUCCUAGCCCCACAGAAUGCUGUGUCCUCUGAAGAAACCAAUGACUPUAAЖCAAGAGACCCUUCCAAGUAAGUCCAACGAAAGCCAUGACCACAUGGAUGAUAUGGAUGAUGAAGAUGAUGAUGACCAUGUGGACAGCCAGGACUCCAUUGACUCGAACGACUCUGAUGAUGUAGAUGACACUGAUGAUUCUCACCAGUCUGAUGAGUCUCACCAUUCUGAUGAAUCUGAUGAЖCUGGUCACUGAUUUUCCCACGGACCUGCCAGCAACCGAAGUUUUCACUCCAGUUGUCCCCACAGUAGACACAUAUGAUGGCCGAGGUGAUAGUGUGGUUUAUGGЖCUGAGGUCAAAAUCUAAGAAGUUUCGCAGACCUGACAPCCAGUACCCUGAUGCUACAGACGAGGACAUCACCUCACACAUGGAAAGCGAGGAGUUGAAUGGUGCAUACAAGGCCAUCCCCGUUGCCCAGGACCUGAACGCGCCUUCUGAUUGGGACAGCCGUGGGAAGGЖCAGUUAUGAAACGAGUCAGCUGGAUGACCAGAGUGCUGAAACCCACAGCCACAAGCAGUCCAGAUUAUAUAAGCGGAAAGCCAAUGAUGAGAGCAAUGAGCAUUCCGAUGUGAUUGAUAGUCAGGAACUUUCCAAAGUCAGCCGUGAAUUCCACAGCCAUGAAUUUCACAGCCAUGAAGAUAUGCUGGUUGUAGЖCCCCAAAAGUAAGGAAGAAGAUAAACACCUGAAAUUUCGUAUUUCUCAUGAAUUAGAUAGUGCAUCUUCUGAGGUCAAUUAAAAGGAGAAAAAAUACAAUUUCUCACUUUGCAUUUAGUCAAAAGAAAAAAUGCUPUAUAGCAAAAUGAAAGAGAACAUGAAAUGCUUCUUUCUCAGUUUAUUGGUUGAAUGUGUAUCUAUUUGAGUCUGGAAAUAACUAAUGUGUUUGAUAAUUAGUUUAGUUUGUGGCUUCAUGGAAACUCCCUGUAAACUAAAAGCUUCAGGGUUAUGUCUAUGUUCAUUCUAUAGAAGAAAUGCAAACUAUCACUGUAUUUUAAUAUUUGUUAUUCUCUCAUGAAUAGAAAUUUAUGUAGAAGCAAACAAAAUACUUUUACCCACUUAAAAAGAGAAUAUAACAUUUUAUGUCACUAUAAUCUUUUGUUUUUUAAGUUAGUGUAUAUUUUGUUGUGAUUAUCUUUUUGUGGUGUGAAUAAAUCUUUUAUCUUGAAUGUAAUAAGAAUUUGGUGGUGUCAAUUGCUUAUUUGUUUUCCCACGGUUGUCCAGCAAUUAAUAAAACAUAACCUUUUUUACUGCCUA
Sequence (SHORT NAMES ENCODING)	AGCAGCAGGAGGAGGCAGAGCACAGCAUCGUCGGGACCAGACUCGUCUCAGGCCAGUUGCAGCCUUCUCAGCCAAACGCCGACCAAGGAAAACUCACUACCAUGAGAAUUGCAGUGAUYUGCUUUUGCCUCCUAGGCAUCACCUGUGCCAUACCAGUUAAACAGGCUGAUUCUGGAAGUUCUGAGGAAAAGCAGCUYUACAACAAAUACCCAGAUGCUGUGGCCACAUGGCUAAACCCUGACCCAUCUCAGAAGCAGAAUCUCCUAGCCCCACAGAAUGCUGUGUCCUCUGAAGAAACCAAUGACUYUAAm6ACAAGAGACCCUUCCAAGUAAGUCCAACGAAAGCCAUGACCACAUGGAUGAUAUGGAUGAUGAAGAUGAUGAUGACCAUGUGGACAGCCAGGACUCCAUUGACUCGAACGACUCUGAUGAUGUAGAUGACACUGAUGAUUCUCACCAGUCUGAUGAGUCUCACCAUUCUGAUGAAUCUGAUGAm6ACUGGUCACUGAUUUUCCCACGGACCUGCCAGCAACCGAAGUUUUCACUCCAGUUGUCCCCACAGUAGACACAUAUGAUGGCCGAGGUGAUAGUGUGGUUUAUGGm6ACUGAGGUCAAAAUCUAAGAAGUUUCGCAGACCUGACAYCCAGUACCCUGAUGCUACAGACGAGGACAUCACCUCACACAUGGAAAGCGAGGAGUUGAAUGGUGCAUACAAGGCCAUCCCCGUUGCCCAGGACCUGAACGCGCCUUCUGAUUGGGACAGCCGUGGGAAGGm6ACAGUUAUGAAACGAGUCAGCUGGAUGACCAGAGUGCUGAAACCCACAGCCACAAGCAGUCCAGAUUAUAUAAGCGGAAAGCCAAUGAUGAGAGCAAUGAGCAUUCCGAUGUGAUUGAUAGUCAGGAACUUUCCAAAGUCAGCCGUGAAUUCCACAGCCAUGAAUUUCACAGCCAUGAAGAUAUGCUGGUUGUAGm6ACCCCAAAAGUAAGGAAGAAGAUAAACACCUGAAAUUUCGUAUUUCUCAUGAAUUAGAUAGUGCAUCUUCUGAGGUCAAUUAAAAGGAGAAAAAAUACAAUUUCUCACUUUGCAUUUAGUCAAAAGAAAAAAUGCUYUAUAGCAAAAUGAAAGAGAACAUGAAAUGCUUCUUUCUCAGUUUAUUGGUUGAAUGUGUAUCUAUUUGAGUCUGGAAAUAACUAAUGUGUUUGAUAAUUAGUUUAGUUUGUGGCUUCAUGGAAACUCCCUGUAAACUAAAAGCUUCAGGGUUAUGUCUAUGUUCAUUCUAUAGAAGAAAUGCAAACUAUCACUGUAUUUUAAUAUUUGUUAUUCUCUCAUGAAUAGAAAUUUAUGUAGAAGCAAACAAAAUACUUUUACCCACUUAAAAAGAGAAUAUAACAUUUUAUGUCACUAUAAUCUUUUGUUUUUUAAGUUAGUGUAUAUUUUGUUGUGAUUAUCUUUUUGUGGUGUGAAUAAAUCUUUUAUCUUGAAUGUAAUAAGAAUUUGGUGGUGUCAAUUGCUUAUUUGUUUUCCCACGGUUGUCCAGCAAUUAAUAAAACAUAACCUUUUUUACUGCCUA
Sequence (MODOMICS CODE ENCODING)	AGCAGCAGGAGGAGGCAGAGCACAGCAUCGUCGGGACCAGACUCGUCUCAGGCCAGUUGCAGCCUUCUCAGCCAAACGCCGACCAAGGAAAACUCACUACCAUGAGAAUUGCAGUGAU2000000009UUGCUUUUGCCUCCUAGGCAUCACCUGUGCCAUACCAGUUAAACAGGCUGAUUCUGGAAGUUCUGAGGAAAAGCAGCU2000000009UUACAACAAAUACCCAGAUGCUGUGGCCACAUGGCUAAACCCUGACCCAUCUCAGAAGCAGAAUCUCCUAGCCCCACAGAAUGCUGUGUCCUCUGAAGAAACCAAUGACU2000000009UUAA2000000006ACAAGAGACCCUUCCAAGUAAGUCCAACGAAAGCCAUGACCACAUGGAUGAUAUGGAUGAUGAAGAUGAUGAUGACCAUGUGGACAGCCAGGACUCCAUUGACUCGAACGACUCUGAUGAUGUAGAUGACACUGAUGAUUCUCACCAGUCUGAUGAGUCUCACCAUUCUGAUGAAUCUGAUGA2000000006ACUGGUCACUGAUUUUCCCACGGACCUGCCAGCAACCGAAGUUUUCACUCCAGUUGUCCCCACAGUAGACACAUAUGAUGGCCGAGGUGAUAGUGUGGUUUAUGG2000000006ACUGAGGUCAAAAUCUAAGAAGUUUCGCAGACCUGACA2000000009UCCAGUACCCUGAUGCUACAGACGAGGACAUCACCUCACACAUGGAAAGCGAGGAGUUGAAUGGUGCAUACAAGGCCAUCCCCGUUGCCCAGGACCUGAACGCGCCUUCUGAUUGGGACAGCCGUGGGAAGG2000000006ACAGUUAUGAAACGAGUCAGCUGGAUGACCAGAGUGCUGAAACCCACAGCCACAAGCAGUCCAGAUUAUAUAAGCGGAAAGCCAAUGAUGAGAGCAAUGAGCAUUCCGAUGUGAUUGAUAGUCAGGAACUUUCCAAAGUCAGCCGUGAAUUCCACAGCCAUGAAUUUCACAGCCAUGAAGAUAUGCUGGUUGUAG2000000006ACCCCAAAAGUAAGGAAGAAGAUAAACACCUGAAAUUUCGUAUUUCUCAUGAAUUAGAUAGUGCAUCUUCUGAGGUCAAUUAAAAGGAGAAAAAAUACAAUUUCUCACUUUGCAUUUAGUCAAAAGAAAAAAUGCU2000000009UUAUAGCAAAAUGAAAGAGAACAUGAAAUGCUUCUUUCUCAGUUUAUUGGUUGAAUGUGUAUCUAUUUGAGUCUGGAAAUAACUAAUGUGUUUGAUAAUUAGUUUAGUUUGUGGCUUCAUGGAAACUCCCUGUAAACUAAAAGCUUCAGGGUUAUGUCUAUGUUCAUUCUAUAGAAGAAAUGCAAACUAUCACUGUAUUUUAAUAUUUGUUAUUCUCUCAUGAAUAGAAAUUUAUGUAGAAGCAAACAAAAUACUUUUACCCACUUAAAAAGAGAAUAUAACAUUUUAUGUCACUAUAAUCUUUUGUUUUUUAAGUUAGUGUAUAUUUUGUUGUGAUUAUCUUUUUGUGGUGUGAAUAAAUCUUUUAUCUUGAAUGUAAUAAGAAUUUGGUGGUGUCAAUUGCUUAUUUGUUUUCCCACGGUUGUCCAGCAAUUAAUAAAACAUAACCUUUUUUACUGCCUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	119	197	307	311	494	599	637	769	964	1100
Modification Positions	Y	Y	Y	m6A	m6A	m6A	Y	m6A	m6A	Y
Genomic Coordinates	4:87976913:+	4:87980048:+	4:87980424:+	4:87980428:+	4:87981651:+	4:87981756:+	4:87981794:+	4:87982619:+	4:87982814:+	4:87982950:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	8cMbzB4aD5Se ArijeGVTwYBw bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	8cMbzB4aD5Se KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE	bXBqJigD9oV3 eGNFqdoGxzRm f6YSioLdAWpr kx7BHU7ZycYE