General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000382723
Gene ID:	ENSG00000163132
Gene Name:	MSX1
Sequence (UNICHARACTER ENCODING)	ЖGGGCCCGGAGCCGGCGAGUGCUCCCGGGAACUCUGCCUGCGCGGCGGCAGCGACCGGAGGCCAGGCCCAGCACGCCGGAGCUGGCCUGCUGGGGAGGGGCGGGAGGCGCGCGCGGGAGGGUCCGCCCGGCCAGGGCCCCGGGCGCUCGCAGAGGCCGGCCGCGCUCCCAGCCCGCCCGGAGCCCAUGCCCGGCGGCUGGCCAGUGCUGCGGCAGAAGGGGGGGCCCGGCUCUGCAUGGCCCCGGCUGCUGACAUGACUUCUUUGCCACUCGGUGUCAAAGUGGAGGЖCUCCGCCUUCGGCAAGCCGGCGGGGGGAGGCGCGGGCCAGGCCCCCAGCGCCGCCGCGGCCACGGCAGCCGCCAUGGGCGCGGACGAGGAGGGGGCCAAGCCCAAAGUGUCCCCUUCGCUCCUGCCCUUCAGCGUGGAGGCGCUCAUGGCCGACCACAGGAAGCCGGGGGCCAAGGAGAGCGCCCUGGCGCCCUCCGAGGGCGUGCAGGCGGCGGGUGGCUCGGCGCAGCCACUGGGCGUCCCGCCGGGGUCGCUGGGAGCCCCGGACGCGCCCUCUUCGCCGCGGCCGCUCGGCCAUUUCUCGGUGGGGGGACUCCUCAAGCUGCCAGAAGAUGCGCUCGUCAAAGCCGAGAGCCCCGAGAAGCCCGAGAGGACCCCGUGGAUGCAGAGCCCCCGCUUCUCCCCGCCGCCGGCCAGGCGGCUGAGCCCCCCAGCCUGCACCCUCCGCAAACACAAGACGAЖCCGUAAGCCGCGGACGCCCUUCACCACCGCGCAGCUGCUGGCGCUGGAGCGCAAGUUCCGCCAGAAGCAGUACCUGUCCAUCGCCGAGCGCGCGGAGUUCUCCAGCUCGCUCAGCCUCACUGAGACGCAGGUGAAGAUAUGGUUCCAGAACCGCCGCGCCAAGGCAAA#AGЖCUACAAGAGGCAGAGCUGGAGAAGCUGAAGAUGGCCGCCAAGCCCAUGCUGCCACCGGCUGCCUUCGGCCUCUCCUUCCCUCUCGGCGGCCCCGCAGCUGUAGCGGCCGCGGCGGGUGCCUCGCUCUACGGUGCCUCUGGCCCCUUCCAGCGCGCCGCGCUGCCUGUGGCGCCCGUGGGЖCUCUACACGGCCCAUGUGGGCUACAGCAUGUACCACCUGACAUAGAGGGUCCCAGGUCGCCCACCUGUGGGCCAGCCGAUUCCUCCAGCCCUGGUGCUGUACCCCCGACGUGCUCCCCUGCUCGGCACCGCCAGCCGCCUUCCCUPUAACCCUCACACUGCUCCAGUUUCACCUCUUUGCUCCCUGAGUUCACUCUCCGAAGUCUGAUCCCUGCCAAAAAGUGGCUGGAAGAGUCCCUUAGUACUCUUCUAGCAUUUAGAUCUACACUCUCGAGUUAAAGAUGGGGAAACUGAGGGCAGAGAGGUUAACAGAUUUAUCUAAGGUCCCCAGCAGAAUUGACAGUUGAACAGAGCUAGAGGCCAUGUCUCCUGCAUAGCUUUUCCCUGUCCUGACACCAGGCAAGAAAAGCGCAGAGAAAUCGGUGUCUGACGAUUUUGGAAAUGAGAACAAUCUCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGʍGAAAAAAAAGACUAGCCAGCCAGGAAGAUGAAUCCUAGCUUCUUCCAUUGGAAAAUUUAAGACAAGUUCAACAACAAAACAUUUGCUCUGGGGGGCAGGGAAAACACAGAUGUGUUGCAAAGGUAGGUUGAAGGGACCUCUCUCUUACCAGUACCAGAAACACAAUUGUAAAAUUAAAAAAAAAAAAAAACUCUUUCUAUUUAЖCAGUACAUUUGUGUGGCUCUCAAЖCAUCCCUUUGGAAGGGAUUGUGUGUACUAUGUAAUAUACUGUAUAUUUGAAAUUUUAUUAUCAUUUAUAUUAUAGCUAUAUUUGUUAAAUAAAUUAAUUUUAAGCUACAAAAA
Sequence (SHORT NAMES ENCODING)	m6AGGGCCCGGAGCCGGCGAGUGCUCCCGGGAACUCUGCCUGCGCGGCGGCAGCGACCGGAGGCCAGGCCCAGCACGCCGGAGCUGGCCUGCUGGGGAGGGGCGGGAGGCGCGCGCGGGAGGGUCCGCCCGGCCAGGGCCCCGGGCGCUCGCAGAGGCCGGCCGCGCUCCCAGCCCGCCCGGAGCCCAUGCCCGGCGGCUGGCCAGUGCUGCGGCAGAAGGGGGGGCCCGGCUCUGCAUGGCCCCGGCUGCUGACAUGACUUCUUUGCCACUCGGUGUCAAAGUGGAGGm6ACUCCGCCUUCGGCAAGCCGGCGGGGGGAGGCGCGGGCCAGGCCCCCAGCGCCGCCGCGGCCACGGCAGCCGCCAUGGGCGCGGACGAGGAGGGGGCCAAGCCCAAAGUGUCCCCUUCGCUCCUGCCCUUCAGCGUGGAGGCGCUCAUGGCCGACCACAGGAAGCCGGGGGCCAAGGAGAGCGCCCUGGCGCCCUCCGAGGGCGUGCAGGCGGCGGGUGGCUCGGCGCAGCCACUGGGCGUCCCGCCGGGGUCGCUGGGAGCCCCGGACGCGCCCUCUUCGCCGCGGCCGCUCGGCCAUUUCUCGGUGGGGGGACUCCUCAAGCUGCCAGAAGAUGCGCUCGUCAAAGCCGAGAGCCCCGAGAAGCCCGAGAGGACCCCGUGGAUGCAGAGCCCCCGCUUCUCCCCGCCGCCGGCCAGGCGGCUGAGCCCCCCAGCCUGCACCCUCCGCAAACACAAGACGAm6ACCGUAAGCCGCGGACGCCCUUCACCACCGCGCAGCUGCUGGCGCUGGAGCGCAAGUUCCGCCAGAAGCAGUACCUGUCCAUCGCCGAGCGCGCGGAGUUCUCCAGCUCGCUCAGCCUCACUGAGACGCAGGUGAAGAUAUGGUUCCAGAACCGCCGCGCCAAGGCAAAGmAGm6ACUACAAGAGGCAGAGCUGGAGAAGCUGAAGAUGGCCGCCAAGCCCAUGCUGCCACCGGCUGCCUUCGGCCUCUCCUUCCCUCUCGGCGGCCCCGCAGCUGUAGCGGCCGCGGCGGGUGCCUCGCUCUACGGUGCCUCUGGCCCCUUCCAGCGCGCCGCGCUGCCUGUGGCGCCCGUGGGm6ACUCUACACGGCCCAUGUGGGCUACAGCAUGUACCACCUGACAUAGAGGGUCCCAGGUCGCCCACCUGUGGGCCAGCCGAUUCCUCCAGCCCUGGUGCUGUACCCCCGACGUGCUCCCCUGCUCGGCACCGCCAGCCGCCUUCCCUYUAACCCUCACACUGCUCCAGUUUCACCUCUUUGCUCCCUGAGUUCACUCUCCGAAGUCUGAUCCCUGCCAAAAAGUGGCUGGAAGAGUCCCUUAGUACUCUUCUAGCAUUUAGAUCUACACUCUCGAGUUAAAGAUGGGGAAACUGAGGGCAGAGAGGUUAACAGAUUUAUCUAAGGUCCCCAGCAGAAUUGACAGUUGAACAGAGCUAGAGGCCAUGUCUCCUGCAUAGCUUUUCCCUGUCCUGACACCAGGCAAGAAAAGCGCAGAGAAAUCGGUGUCUGACGAUUUUGGAAAUGAGAACAAUCUCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAmGAAAAAAAAGACUAGCCAGCCAGGAAGAUGAAUCCUAGCUUCUUCCAUUGGAAAAUUUAAGACAAGUUCAACAACAAAACAUUUGCUCUGGGGGGCAGGGAAAACACAGAUGUGUUGCAAAGGUAGGUUGAAGGGACCUCUCUCUUACCAGUACCAGAAACACAAUUGUAAAAUUAAAAAAAAAAAAAAACUCUUUCUAUUUAm6ACAGUACAUUUGUGUGGCUCUCAAm6ACAUCCCUUUGGAAGGGAUUGUGUGUACUAUGUAAUAUACUGUAUAUUUGAAAUUUUAUUAUCAUUUAUAUUAUAGCUAUAUUUGUUAAAUAAAUUAAUUUUAAGCUACAAAAA
Sequence (MODOMICS CODE ENCODING)	2000000006AGGGCCCGGAGCCGGCGAGUGCUCCCGGGAACUCUGCCUGCGCGGCGGCAGCGACCGGAGGCCAGGCCCAGCACGCCGGAGCUGGCCUGCUGGGGAGGGGCGGGAGGCGCGCGCGGGAGGGUCCGCCCGGCCAGGGCCCCGGGCGCUCGCAGAGGCCGGCCGCGCUCCCAGCCCGCCCGGAGCCCAUGCCCGGCGGCUGGCCAGUGCUGCGGCAGAAGGGGGGGCCCGGCUCUGCAUGGCCCCGGCUGCUGACAUGACUUCUUUGCCACUCGGUGUCAAAGUGGAGG2000000006ACUCCGCCUUCGGCAAGCCGGCGGGGGGAGGCGCGGGCCAGGCCCCCAGCGCCGCCGCGGCCACGGCAGCCGCCAUGGGCGCGGACGAGGAGGGGGCCAAGCCCAAAGUGUCCCCUUCGCUCCUGCCCUUCAGCGUGGAGGCGCUCAUGGCCGACCACAGGAAGCCGGGGGCCAAGGAGAGCGCCCUGGCGCCCUCCGAGGGCGUGCAGGCGGCGGGUGGCUCGGCGCAGCCACUGGGCGUCCCGCCGGGGUCGCUGGGAGCCCCGGACGCGCCCUCUUCGCCGCGGCCGCUCGGCCAUUUCUCGGUGGGGGGACUCCUCAAGCUGCCAGAAGAUGCGCUCGUCAAAGCCGAGAGCCCCGAGAAGCCCGAGAGGACCCCGUGGAUGCAGAGCCCCCGCUUCUCCCCGCCGCCGGCCAGGCGGCUGAGCCCCCCAGCCUGCACCCUCCGCAAACACAAGACGA2000000006ACCGUAAGCCGCGGACGCCCUUCACCACCGCGCAGCUGCUGGCGCUGGAGCGCAAGUUCCGCCAGAAGCAGUACCUGUCCAUCGCCGAGCGCGCGGAGUUCUCCAGCUCGCUCAGCCUCACUGAGACGCAGGUGAAGAUAUGGUUCCAGAACCGCCGCGCCAAGGCAAA2000000090GAG2000000006ACUACAAGAGGCAGAGCUGGAGAAGCUGAAGAUGGCCGCCAAGCCCAUGCUGCCACCGGCUGCCUUCGGCCUCUCCUUCCCUCUCGGCGGCCCCGCAGCUGUAGCGGCCGCGGCGGGUGCCUCGCUCUACGGUGCCUCUGGCCCCUUCCAGCGCGCCGCGCUGCCUGUGGCGCCCGUGGG2000000006ACUCUACACGGCCCAUGUGGGCUACAGCAUGUACCACCUGACAUAGAGGGUCCCAGGUCGCCCACCUGUGGGCCAGCCGAUUCCUCCAGCCCUGGUGCUGUACCCCCGACGUGCUCCCCUGCUCGGCACCGCCAGCCGCCUUCCCU2000000009UUAACCCUCACACUGCUCCAGUUUCACCUCUUUGCUCCCUGAGUUCACUCUCCGAAGUCUGAUCCCUGCCAAAAAGUGGCUGGAAGAGUCCCUUAGUACUCUUCUAGCAUUUAGAUCUACACUCUCGAGUUAAAGAUGGGGAAACUGAGGGCAGAGAGGUUAACAGAUUUAUCUAAGGUCCCCAGCAGAAUUGACAGUUGAACAGAGCUAGAGGCCAUGUCUCCUGCAUAGCUUUUCCCUGUCCUGACACCAGGCAAGAAAAGCGCAGAGAAAUCGGUGUCUGACGAUUUUGGAAAUGAGAACAAUCUCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAG2000000090AGAAAAAAAAGACUAGCCAGCCAGGAAGAUGAAUCCUAGCUUCUUCCAUUGGAAAAUUUAAGACAAGUUCAACAACAAAACAUUUGCUCUGGGGGGCAGGGAAAACACAGAUGUGUUGCAAAGGUAGGUUGAAGGGACCUCUCUCUUACCAGUACCAGAAACACAAUUGUAAAAUUAAAAAAAAAAAAAAACUCUUUCUAUUUA2000000006ACAGUACAUUUGUGUGGCUCUCAA2000000006ACAUCCCUUUGGAAGGGAUUGUGUGUACUAUGUAAUAUACUGUAUAUUUGAAAUUUUAUUAUCAUUUAUAUUAUAGCUAUAUUUGUUAAAUAAAUUAAUUUUAAGCUACAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1	288	750	919	922	1102	1248	1599	1803	1827
Modification Positions	m6A	m6A	m6A	Gm	m6A	m6A	Y	Am	m6A	m6A
Genomic Coordinates	4:4859665:+	4:4859952:+	4:4862746:+	4:4862915:+	4:4862918:+	4:4863098:+	4:4863244:+	4:4863595:+	4:4863799:+	4:4863823:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	3TeAZFYFxgvp 6AyXsheySjfx msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL BkoLW2CBToyL BtsJQJ3DteUq iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8