Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000296522
Gene ID: ENSG00000164120
Gene Name: HPGD
Sequence (UNICHARACTER ENCODING) GAGCUCGCCCACCGCCCGCCCCAGCAGUGGCUGCACCAUGCACGUGAACGGCAAAGUGGCGCUGGUGACCGGCGCGGCUCAGGGCAUAGGCAGAGCCUUUGCAGAGGCGCUGCUGCUUAAGGGCGCCAAGGUAGCGCUGGUGGAUUGGAAUCUUGAAGCAGGUGUACAGUGUAAAGCUGCCCUGGAUGAGCAGUUUGAACCUCAGAAGACUCUGUUCAUCCAGUGCGAUGUGGCUGACCAGCAACAACUGAGAGACACUUUUAGAAAAGUUGUAGACCACUUUGGAAGACUGGACAUUUUGGUCAAUAAUGCUGGAGUGAAUAAUGAGAAAAACUGGGAAAAAACUCUGCAAAUUAAUUUGGUUUCUGUUAUCAGUGGAACCUAUCUUGGUUUGGAUUACAUGAGUAAGCAAAAUGGAGGUGAAGGCGGCAUCAUUAUCAAUAUGUCAUCUPUAGCAGGACUCAUGCCCGUUGCACAGCAGCCGGUUUAUUGUGCUUCAAAGCAUGGCAUAGUUGGAUUCACACGCUCAGCAGCGUUGGCUGCUAAUCUUAUGAACAGUGGUGUGAGACUGAAUGCCAUUUGUCCAGGCUUUGUUAЖCACAGCCAPCCUUGAAUCAAUUGAAAAAGAAGAAAACAUGGGACAAUAUAUAGAAUAUAAGGAUCAUAUCAAGGAUAUGAUUAAAUACUAUGGAAUUUUGGACCCACCAUUGAUUGCCAAUGGAUUGAUAЖCACUCAUUGAAGAUGAUGCUPUAAAUGGUGCUAUUAUGAAGAUCACAACUUCUAAGGGAAUUCAUUUUCAAGACUAUGAUACAACUCCAUUUCAAGCAAAAACCCAAUGAACAGCUUAUGUGUUAGCCAUAGCUGAAAAUAAGCACAAAUAGCUUAUAUUCAGAUCCUAUCUUCAUUUGAAUAUAGCUUUUAAAUGAAAUGUUACAGUUUGAAGUUUUCCUUCAUGCACUUGGUGAUAAACGUUUUCUAAAUUUUUAGUUAAGUAUAUGGAUAAAAAGUUAUGAACUAUUAAAAAUGUGAUGUGGACCAAAGGCUAGGUUGUAAUCUUGAUAGUCUAAAAAAUGAUCAAAACAAAUGAUUUUCAAGGAAUAUUCAAUAUUCUGCCUUUCAGAAAGUGUAUUUAUAUCUGUGCUUCAUAAAUAUUAAUGUUCUUCAGAACAUCAUUUUAAAGGAGAUACUUGAAUUGUUAUUUAAAUCAAACCAGAUGUAAAACACUCACAUACAAGUUCAUACUPUAAAAGAGGAAAGCUACUUAЖCAAUGACAAAUAUUUCACAAUAAUAAUUUUUACUUAUAUACCAUCUUUCAACUGAACAUUUCAGUUCUUCCAAGAGCUUCUUAGAGUAGUAUAUUUUGGGGGCAGUCAAGGAAUAAACUACAGUGUAAACAUAUCCCAGAUGAAAACUGCUGUAUGGAAAAAUGACAGAAAGUAACUGAUUGACACUGUUGAUUCACAGUUCAGCCUCCUAUCUGGGAAAGACAUUUCUUUCCUCUGCUCACUPUAAGAЖCUUUUACCGACUCCAAAAAUCUCAGGAAUUAAACUUUUAЖCAGUUACAGCAAUAAAGAAUAGUUAGUACUCCAAAAAUAUUAUAUUUAAGAUGCUCAACAAGAAAAAAAUGCAAAUGUAAUAUUUUUUUCAAAUUACUUCUPUAUUGACUUGUCCAAAUUUCAAAAGUGCCUACCCUUCAAUAAAACUUUUUUAUUCUGAUCUCCAUAAAUUACUUAGUCUUCUAUGUAUAGCUAUCAAGGAAAUAAAACCAAUUUUGCCACAGCCACAACUGUAAAUGUUUUUGUACCCAUGCUGAAACUCAUAACAACACAGACAUAAAAAUAGCUGUGAGGUUUUGCUUUUUUUGUUGUCAGCUAUCUUAAGAAUCAUUAAAUACACCUGCUUUGGGUAAAACUCUUUGCAAGCAGUAAUUAACACUAGUAЖCAGUGAAAGCACAAGAUUUCCAAAUCAGUCGUUUUCUCAAAAAAAUAUCGUAUAAGUGACUCAPCCUGUCUGCUAACUCCAGACCUCCCAGCUUGAAGCCAAAUCUUUCCAUGUGAGAUUGAUAUGGAUUUCCUAGAAGUACUGGAAUGUUGUCAUAUCUUGCCCUAUUUUAAUUCUGCUAUAGAAAACAAUUGCCUUCACUUUUAAGGAGUAAUUUGAAUAUUAAUAACUCUGGUCUAGAUUUUCAUAUAAUGUAUUAAAGACAAAGUAGUGAACAUCAAUGAACAUCUGAUAGAGAUAAACUGUAAUCAGGCAUAAGCUUGUUUGUAUGUUCUGGCAGUGACUAAUCAGUAAAUGAUGUCGGUUUGCCCAGUAUCACUUAUCUUCUGUAUUUUUCCUCUGUCGUGUAAAUAGUAUAACCUUUUCAUUUAUGGACAAUUUUUUGGACUAGUAGCCUUCAAUAUACAUUCUGCUUUGAAUUAAUUUUUUCAAAUCAAUAAAUUAUGUAGACAUUUAAAAUCAAAUAUCAAGUAGAAUUGAAAAAUGUGAGUUACAUAAGUUAAAAACUUACUUUAAAUCUUACCUUCUAUAGGUAGCUCUAAAUAAAUUCAUAUGGUUAUAUGGCAUCUCUGGUGUAUACUGAUUGAGAAAAUAAUUAAACUGAAGUUAGGGGAGGGGGA
Sequence (SHORT NAMES ENCODING) GAGCUCGCCCACCGCCCGCCCCAGCAGUGGCUGCACCAUGCACGUGAACGGCAAAGUGGCGCUGGUGACCGGCGCGGCUCAGGGCAUAGGCAGAGCCUUUGCAGAGGCGCUGCUGCUUAAGGGCGCCAAGGUAGCGCUGGUGGAUUGGAAUCUUGAAGCAGGUGUACAGUGUAAAGCUGCCCUGGAUGAGCAGUUUGAACCUCAGAAGACUCUGUUCAUCCAGUGCGAUGUGGCUGACCAGCAACAACUGAGAGACACUUUUAGAAAAGUUGUAGACCACUUUGGAAGACUGGACAUUUUGGUCAAUAAUGCUGGAGUGAAUAAUGAGAAAAACUGGGAAAAAACUCUGCAAAUUAAUUUGGUUUCUGUUAUCAGUGGAACCUAUCUUGGUUUGGAUUACAUGAGUAAGCAAAAUGGAGGUGAAGGCGGCAUCAUUAUCAAUAUGUCAUCUYUAGCAGGACUCAUGCCCGUUGCACAGCAGCCGGUUUAUUGUGCUUCAAAGCAUGGCAUAGUUGGAUUCACACGCUCAGCAGCGUUGGCUGCUAAUCUUAUGAACAGUGGUGUGAGACUGAAUGCCAUUUGUCCAGGCUUUGUUAm6ACACAGCCAYCCUUGAAUCAAUUGAAAAAGAAGAAAACAUGGGACAAUAUAUAGAAUAUAAGGAUCAUAUCAAGGAUAUGAUUAAAUACUAUGGAAUUUUGGACCCACCAUUGAUUGCCAAUGGAUUGAUAm6ACACUCAUUGAAGAUGAUGCUYUAAAUGGUGCUAUUAUGAAGAUCACAACUUCUAAGGGAAUUCAUUUUCAAGACUAUGAUACAACUCCAUUUCAAGCAAAAACCCAAUGAACAGCUUAUGUGUUAGCCAUAGCUGAAAAUAAGCACAAAUAGCUUAUAUUCAGAUCCUAUCUUCAUUUGAAUAUAGCUUUUAAAUGAAAUGUUACAGUUUGAAGUUUUCCUUCAUGCACUUGGUGAUAAACGUUUUCUAAAUUUUUAGUUAAGUAUAUGGAUAAAAAGUUAUGAACUAUUAAAAAUGUGAUGUGGACCAAAGGCUAGGUUGUAAUCUUGAUAGUCUAAAAAAUGAUCAAAACAAAUGAUUUUCAAGGAAUAUUCAAUAUUCUGCCUUUCAGAAAGUGUAUUUAUAUCUGUGCUUCAUAAAUAUUAAUGUUCUUCAGAACAUCAUUUUAAAGGAGAUACUUGAAUUGUUAUUUAAAUCAAACCAGAUGUAAAACACUCACAUACAAGUUCAUACUYUAAAAGAGGAAAGCUACUUAm6ACAAUGACAAAUAUUUCACAAUAAUAAUUUUUACUUAUAUACCAUCUUUCAACUGAACAUUUCAGUUCUUCCAAGAGCUUCUUAGAGUAGUAUAUUUUGGGGGCAGUCAAGGAAUAAACUACAGUGUAAACAUAUCCCAGAUGAAAACUGCUGUAUGGAAAAAUGACAGAAAGUAACUGAUUGACACUGUUGAUUCACAGUUCAGCCUCCUAUCUGGGAAAGACAUUUCUUUCCUCUGCUCACUYUAAGAm6ACUUUUACCGACUCCAAAAAUCUCAGGAAUUAAACUUUUAm6ACAGUUACAGCAAUAAAGAAUAGUUAGUACUCCAAAAAUAUUAUAUUUAAGAUGCUCAACAAGAAAAAAAUGCAAAUGUAAUAUUUUUUUCAAAUUACUUCUYUAUUGACUUGUCCAAAUUUCAAAAGUGCCUACCCUUCAAUAAAACUUUUUUAUUCUGAUCUCCAUAAAUUACUUAGUCUUCUAUGUAUAGCUAUCAAGGAAAUAAAACCAAUUUUGCCACAGCCACAACUGUAAAUGUUUUUGUACCCAUGCUGAAACUCAUAACAACACAGACAUAAAAAUAGCUGUGAGGUUUUGCUUUUUUUGUUGUCAGCUAUCUUAAGAAUCAUUAAAUACACCUGCUUUGGGUAAAACUCUUUGCAAGCAGUAAUUAACACUAGUAm6ACAGUGAAAGCACAAGAUUUCCAAAUCAGUCGUUUUCUCAAAAAAAUAUCGUAUAAGUGACUCAYCCUGUCUGCUAACUCCAGACCUCCCAGCUUGAAGCCAAAUCUUUCCAUGUGAGAUUGAUAUGGAUUUCCUAGAAGUACUGGAAUGUUGUCAUAUCUUGCCCUAUUUUAAUUCUGCUAUAGAAAACAAUUGCCUUCACUUUUAAGGAGUAAUUUGAAUAUUAAUAACUCUGGUCUAGAUUUUCAUAUAAUGUAUUAAAGACAAAGUAGUGAACAUCAAUGAACAUCUGAUAGAGAUAAACUGUAAUCAGGCAUAAGCUUGUUUGUAUGUUCUGGCAGUGACUAAUCAGUAAAUGAUGUCGGUUUGCCCAGUAUCACUUAUCUUCUGUAUUUUUCCUCUGUCGUGUAAAUAGUAUAACCUUUUCAUUUAUGGACAAUUUUUUGGACUAGUAGCCUUCAAUAUACAUUCUGCUUUGAAUUAAUUUUUUCAAAUCAAUAAAUUAUGUAGACAUUUAAAAUCAAAUAUCAAGUAGAAUUGAAAAAUGUGAGUUACAUAAGUUAAAAACUUACUUUAAAUCUUACCUUCUAUAGGUAGCUCUAAAUAAAUUCAUAUGGUUAUAUGGCAUCUCUGGUGUAUACUGAUUGAGAAAAUAAUUAAACUGAAGUUAGGGGAGGGGGA
Sequence (MODOMICS CODE ENCODING) GAGCUCGCCCACCGCCCGCCCCAGCAGUGGCUGCACCAUGCACGUGAACGGCAAAGUGGCGCUGGUGACCGGCGCGGCUCAGGGCAUAGGCAGAGCCUUUGCAGAGGCGCUGCUGCUUAAGGGCGCCAAGGUAGCGCUGGUGGAUUGGAAUCUUGAAGCAGGUGUACAGUGUAAAGCUGCCCUGGAUGAGCAGUUUGAACCUCAGAAGACUCUGUUCAUCCAGUGCGAUGUGGCUGACCAGCAACAACUGAGAGACACUUUUAGAAAAGUUGUAGACCACUUUGGAAGACUGGACAUUUUGGUCAAUAAUGCUGGAGUGAAUAAUGAGAAAAACUGGGAAAAAACUCUGCAAAUUAAUUUGGUUUCUGUUAUCAGUGGAACCUAUCUUGGUUUGGAUUACAUGAGUAAGCAAAAUGGAGGUGAAGGCGGCAUCAUUAUCAAUAUGUCAUCU2000000009UUAGCAGGACUCAUGCCCGUUGCACAGCAGCCGGUUUAUUGUGCUUCAAAGCAUGGCAUAGUUGGAUUCACACGCUCAGCAGCGUUGGCUGCUAAUCUUAUGAACAGUGGUGUGAGACUGAAUGCCAUUUGUCCAGGCUUUGUUA2000000006ACACAGCCA2000000009UCCUUGAAUCAAUUGAAAAAGAAGAAAACAUGGGACAAUAUAUAGAAUAUAAGGAUCAUAUCAAGGAUAUGAUUAAAUACUAUGGAAUUUUGGACCCACCAUUGAUUGCCAAUGGAUUGAUA2000000006ACACUCAUUGAAGAUGAUGCU2000000009UUAAAUGGUGCUAUUAUGAAGAUCACAACUUCUAAGGGAAUUCAUUUUCAAGACUAUGAUACAACUCCAUUUCAAGCAAAAACCCAAUGAACAGCUUAUGUGUUAGCCAUAGCUGAAAAUAAGCACAAAUAGCUUAUAUUCAGAUCCUAUCUUCAUUUGAAUAUAGCUUUUAAAUGAAAUGUUACAGUUUGAAGUUUUCCUUCAUGCACUUGGUGAUAAACGUUUUCUAAAUUUUUAGUUAAGUAUAUGGAUAAAAAGUUAUGAACUAUUAAAAAUGUGAUGUGGACCAAAGGCUAGGUUGUAAUCUUGAUAGUCUAAAAAAUGAUCAAAACAAAUGAUUUUCAAGGAAUAUUCAAUAUUCUGCCUUUCAGAAAGUGUAUUUAUAUCUGUGCUUCAUAAAUAUUAAUGUUCUUCAGAACAUCAUUUUAAAGGAGAUACUUGAAUUGUUAUUUAAAUCAAACCAGAUGUAAAACACUCACAUACAAGUUCAUACU2000000009UUAAAAGAGGAAAGCUACUUA2000000006ACAAUGACAAAUAUUUCACAAUAAUAAUUUUUACUUAUAUACCAUCUUUCAACUGAACAUUUCAGUUCUUCCAAGAGCUUCUUAGAGUAGUAUAUUUUGGGGGCAGUCAAGGAAUAAACUACAGUGUAAACAUAUCCCAGAUGAAAACUGCUGUAUGGAAAAAUGACAGAAAGUAACUGAUUGACACUGUUGAUUCACAGUUCAGCCUCCUAUCUGGGAAAGACAUUUCUUUCCUCUGCUCACU2000000009UUAAGA2000000006ACUUUUACCGACUCCAAAAAUCUCAGGAAUUAAACUUUUA2000000006ACAGUUACAGCAAUAAAGAAUAGUUAGUACUCCAAAAAUAUUAUAUUUAAGAUGCUCAACAAGAAAAAAAUGCAAAUGUAAUAUUUUUUUCAAAUUACUUCU2000000009UUAUUGACUUGUCCAAAUUUCAAAAGUGCCUACCCUUCAAUAAAACUUUUUUAUUCUGAUCUCCAUAAAUUACUUAGUCUUCUAUGUAUAGCUAUCAAGGAAAUAAAACCAAUUUUGCCACAGCCACAACUGUAAAUGUUUUUGUACCCAUGCUGAAACUCAUAACAACACAGACAUAAAAAUAGCUGUGAGGUUUUGCUUUUUUUGUUGUCAGCUAUCUUAAGAAUCAUUAAAUACACCUGCUUUGGGUAAAACUCUUUGCAAGCAGUAAUUAACACUAGUA2000000006ACAGUGAAAGCACAAGAUUUCCAAAUCAGUCGUUUUCUCAAAAAAAUAUCGUAUAAGUGACUCA2000000009UCCUGUCUGCUAACUCCAGACCUCCCAGCUUGAAGCCAAAUCUUUCCAUGUGAGAUUGAUAUGGAUUUCCUAGAAGUACUGGAAUGUUGUCAUAUCUUGCCCUAUUUUAAUUCUGCUAUAGAAAACAAUUGCCUUCACUUUUAAGGAGUAAUUUGAAUAUUAAUAACUCUGGUCUAGAUUUUCAUAUAAUGUAUUAAAGACAAAGUAGUGAACAUCAAUGAACAUCUGAUAGAGAUAAACUGUAAUCAGGCAUAAGCUUGUUUGUAUGUUCUGGCAGUGACUAAUCAGUAAAUGAUGUCGGUUUGCCCAGUAUCACUUAUCUUCUGUAUUUUUCCUCUGUCGUGUAAAUAGUAUAACCUUUUCAUUUAUGGACAAUUUUUUGGACUAGUAGCCUUCAAUAUACAUUCUGCUUUGAAUUAAUUUUUUCAAAUCAAUAAAUUAUGUAGACAUUUAAAAUCAAAUAUCAAGUAGAAUUGAAAAAUGUGAGUUACAUAAGUUAAAAACUUACUUUAAAUCUUACCUUCUAUAGGUAGCUCUAAAUAAAUUCAUAUGGUUAUAUGGCAUCUCUGGUGUAUACUGAUUGAGAAAAUAAUUAAACUGAAGUUAGGGGAGGGGGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 452 597 606 728 749 1243 1264 1508 1514 1554 1656 1939 2003
Modification Positions Y m6A Y m6A Y Y m6A Y m6A m6A Y m6A Y
Genomic Coordinates 4:174508702:- 4:174493253:- 4:174493244:- 4:174492066:- 4:174492045:- 4:174491551:- 4:174491530:- 4:174491286:- 4:174491280:- 4:174491240:- 4:174491138:- 4:174490855:- 4:174490791:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
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f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
8cMbzB4aD5Se
ArijeGVTwYBw
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr