General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000512932
Gene ID:	ENSG00000251022
Gene Name:	THAP9-AS1
Sequence (UNICHARACTER ENCODING)	GCUCCUCCCUCCGCGUUGGAGGCGGAAUAGUGGGUUUUGCUGCAACCGGUUUAUUUUCCUUCUGUUUUCACCCAUUCUGGCACAAUCUGGCGCCAUCGUCCUUCUUGUGAGGCCAAGCCUGAAAAUGCGAAGCAGAGAGGCAGGACCAAAAUUGAGGCGAAUCCAGGAACCUGCCAAUGGGUCUCCGGGUGCGGUCUCUGAAACUGGAGGAUAUCGGGAGGAAAGGCUCUCCGAUGCGGAGAUAAUGGGGAAGCUCUUGGCAUGGUUGGCUGUAGGUAUGUGAUACCGGAGGAGCAGGAGUCAAAUAGGAUACGCCGACUUUUAAUUCAAGGAACCCUUUUCUGAAACACUUUGCCACAAUGAAGGAAAUAAGGAUCUAGUUUGAAGCACUAAGAAGAAUAAGACAUCAGUUUGAAAAGAGGCUCUAUCAGAACAACACGAAUUCUGCUAAAAUUGAAGCAAGAACAAACAUCAAAUAUAUGUUGACACUUGGGUGGAAGAAUGGUGAЖCUAAUUGAUGCUPUAUGAAAAGUUGAUAGGGЖCAGUGCUCCAAAGAAAUCAGUUUACAAAUGGAUAЖCUCGUUUUAAGAAGGCAUAAGGUAAUGUUGAAGAAGAAGCCCACAGUGGCAGAUCAPCCACAUCAGUUUGUGAGAAAAAAGUUAGUUCAUGGCGUAAUUGAAGAAAACCAACAAUUAACAGCAGAAACAACAGCCAACACCAUAGЖCAUCUCAGUUGGUUCACCUUACACAAUUUUGЖCUGGAAAAGUUCAGCAAЖCUPUAUACCUGAUAGGUACCAAAACCAUUGCACCCAGAUCAGCUACAGACAAGAAUAGAGCUUUCAAUGGAAAUUUUAAAUAAGUGGGAUCAGGAUCUUGAAGCCUUUCAUUGAAAAAUUGUAACAGGAGAUGAAACAUGGCUPUACCAGCGCAAUCCUGAAGACAAAACACAAAGCAGUGGUUACCAAGAUAAGUAGU
Sequence (SHORT NAMES ENCODING)	GCUCCUCCCUCCGCGUUGGAGGCGGAAUAGUGGGUUUUGCUGCAACCGGUUUAUUUUCCUUCUGUUUUCACCCAUUCUGGCACAAUCUGGCGCCAUCGUCCUUCUUGUGAGGCCAAGCCUGAAAAUGCGAAGCAGAGAGGCAGGACCAAAAUUGAGGCGAAUCCAGGAACCUGCCAAUGGGUCUCCGGGUGCGGUCUCUGAAACUGGAGGAUAUCGGGAGGAAAGGCUCUCCGAUGCGGAGAUAAUGGGGAAGCUCUUGGCAUGGUUGGCUGUAGGUAUGUGAUACCGGAGGAGCAGGAGUCAAAUAGGAUACGCCGACUUUUAAUUCAAGGAACCCUUUUCUGAAACACUUUGCCACAAUGAAGGAAAUAAGGAUCUAGUUUGAAGCACUAAGAAGAAUAAGACAUCAGUUUGAAAAGAGGCUCUAUCAGAACAACACGAAUUCUGCUAAAAUUGAAGCAAGAACAAACAUCAAAUAUAUGUUGACACUUGGGUGGAAGAAUGGUGAm6ACUAAUUGAUGCUYUAUGAAAAGUUGAUAGGGm6ACAGUGCUCCAAAGAAAUCAGUUUACAAAUGGAUAm6ACUCGUUUUAAGAAGGCAUAAGGUAAUGUUGAAGAAGAAGCCCACAGUGGCAGAUCAYCCACAUCAGUUUGUGAGAAAAAAGUUAGUUCAUGGCGUAAUUGAAGAAAACCAACAAUUAACAGCAGAAACAACAGCCAACACCAUAGm6ACAUCUCAGUUGGUUCACCUUACACAAUUUUGm6ACUGGAAAAGUUCAGCAAm6ACUYUAUACCUGAUAGGUACCAAAACCAUUGCACCCAGAUCAGCUACAGACAAGAAUAGAGCUUUCAAUGGAAAUUUUAAAUAAGUGGGAUCAGGAUCUUGAAGCCUUUCAUUGAAAAAUUGUAACAGGAGAUGAAACAUGGCUYUACCAGCGCAAUCCUGAAGACAAAACACAAAGCAGUGGUUACCAAGAUAAGUAGU
Sequence (MODOMICS CODE ENCODING)	GCUCCUCCCUCCGCGUUGGAGGCGGAAUAGUGGGUUUUGCUGCAACCGGUUUAUUUUCCUUCUGUUUUCACCCAUUCUGGCACAAUCUGGCGCCAUCGUCCUUCUUGUGAGGCCAAGCCUGAAAAUGCGAAGCAGAGAGGCAGGACCAAAAUUGAGGCGAAUCCAGGAACCUGCCAAUGGGUCUCCGGGUGCGGUCUCUGAAACUGGAGGAUAUCGGGAGGAAAGGCUCUCCGAUGCGGAGAUAAUGGGGAAGCUCUUGGCAUGGUUGGCUGUAGGUAUGUGAUACCGGAGGAGCAGGAGUCAAAUAGGAUACGCCGACUUUUAAUUCAAGGAACCCUUUUCUGAAACACUUUGCCACAAUGAAGGAAAUAAGGAUCUAGUUUGAAGCACUAAGAAGAAUAAGACAUCAGUUUGAAAAGAGGCUCUAUCAGAACAACACGAAUUCUGCUAAAAUUGAAGCAAGAACAAACAUCAAAUAUAUGUUGACACUUGGGUGGAAGAAUGGUGA2000000006ACUAAUUGAUGCU2000000009UUAUGAAAAGUUGAUAGGG2000000006ACAGUGCUCCAAAGAAAUCAGUUUACAAAUGGAUA2000000006ACUCGUUUUAAGAAGGCAUAAGGUAAUGUUGAAGAAGAAGCCCACAGUGGCAGAUCA2000000009UCCACAUCAGUUUGUGAGAAAAAAGUUAGUUCAUGGCGUAAUUGAAGAAAACCAACAAUUAACAGCAGAAACAACAGCCAACACCAUAG2000000006ACAUCUCAGUUGGUUCACCUUACACAAUUUUG2000000006ACUGGAAAAGUUCAGCAA2000000006ACU2000000009UUAUACCUGAUAGGUACCAAAACCAUUGCACCCAGAUCAGCUACAGACAAGAAUAGAGCUUUCAAUGGAAAUUUUAAAUAAGUGGGAUCAGGAUCUUGAAGCCUUUCAUUGAAAAAUUGUAACAGGAGAUGAAACAUGGCU2000000009UUACCAGCGCAAUCCUGAAGACAAAACACAAAGCAGUGGUUACCAAGAUAAGUAGU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	509	522	541	576	633	722	754	772	775	916
Modification Positions	m6A	Y	m6A	m6A	Y	m6A	m6A	m6A	Y	Y
Genomic Coordinates	4:82894712:-	4:82894699:-	4:82894680:-	4:82894645:-	4:82894588:-	4:82894499:-	4:82894467:-	4:82894449:-	4:82894446:-	4:82894305:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 93arJtwJmuS9 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	5aTkEfEpX8Xm 6UuHp6YApVKv msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BkoLW2CBToyL KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	4HMi5ykupT9V 5aTkEfEpX8Xm jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8