General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000541923
Gene ID:	ENSG00000164120
Gene Name:	HPGD
Sequence (UNICHARACTER ENCODING)	GCUUUAUUGUUUGCUUGUUUUGUUCCGGAGUCGGGGCCGGGAGGGAGUGCAGGAGGAGGGAUCCAAGCUUCCAAGCCUCUGCUCCGCUCUCCUUCUAUCCAGUUGGUCUUUAGGGCACUGAAGGAAACUCUUCUUCAGAAAUAACCUUUUAACUUUUCUUCUGUCAGCUGCCUGCCAAUCACGGAGCCAGAGGCUGAGGGGAGGCUUUGAGCCGGUCUGCGAGUCCGGAAGGCAAAGAUCGCGAAGCUUGGCGCUCCAGAACGCUCAGGGGGCAGGUGACACAGUCGUGGGUUCCCCGGCGGGCGCUGGCUUGACAGUUUCCUCCCCGCCCACUGGCAGGGGAGCGCCCCGCCGGGCUGCACGCGCGCGCGCGCAGGGGGGCAUAAAAGCCGCGGCCGCGCGGAGACGCGGAGCUCGCCCACCGCCCGCCCCAGCAGUGGCUGCACCAUGCACGUGAACGGCAAAGUGGCGCUGGUGACCGGCGCGGCUCAGGGCAUAGGCAGAGCCUUUGCAGAGGCGCUGCUGCUUAAGGGCGCCAAGGUAGCGCUGGUGGAUUGGAAUCUUGAAGCAGGUGUACAGUGUAAAGCUGCCCUGGAUGAGCAGUUUGAACCUCAGAAGACUCUGUUCAUCCAGUGCGAUGUGGCUGACCAGCAACAACUGAGAGGUUUCUGUUAUCAGUGGAACCUAUCUUGGUUUGGAUUACAUGAGUAAGCAAAAUGGAGGUGAAGGCGGCAUCAUUAUCAAUAUGUCAUCUPUAGCAGGACUCAUGCCCGUUGCACAGCAGCCGGUUUAUUGUGCUUCAAAGCAUGGCAUAGUUGGAUUCACACGCUCAGCAGCGUUGGCUGCUAAUCUUAUGAACAGUGGUGUGAGACUGAAUGCCAUUUGUCCAGGCUUUGUUAЖCACAGCCAPCCUUGAAUCAAUUGAAAAAGAAGAAAACAUGGGACAAUAUAUAGAAUAUAAGGAUCAUAUCAAGGAUAUGAUUAAAUACUAUGGAAUUUUGGACCCACCAUUGAUUGCCAAUGGAUUGAUAЖCACUCAUUGAAGAUGAUGCUPUAAAUGGUGCUAUUAUGAAGAUCACAACUUCUAAGGGAAUUCAUUUUCAAGACUAUGAUACAACUCCAUUUCAAGCAAAAACCCAAUGAACAGCUUAUGUGUUAGCCAUAGCUGAAAAUAAGCACAAAUAGCUUAUAUUCAGAUCCUAUCUUCAUUUGAAUAUAGCUUUUAAAUGAAAUGUUACAGUUUGAAGUUUUCCUUCAUGCACUUGGUGAUAAACGUUUUCUAAAUUUUUAGUUAAGUAUAUGGAUAAAAAGUUAUGAACUAUUAAAAAUGUGAUGUGGACCAAAGGCUAGGUUGUAAUCUUGAUAGUCUAAAAAAUGAUCAAAACAAAUGAUUUUCAAGGAAUAUUCAAUAUUCUGCCUUUCAGAAAGUGUAUUUAUAUCUGUGCUUCAUAAAUAUUAAUGUUCUUCAGAACAUCAUUUUAAAGGAGAUACUUGAAUUGUUAUUUAAAUCAAACCAGAUGUAAAACACUCACAUACAAGUUCAUACUPUAAAAGAGGAAAGCUACUUAЖCAAUGACAAAUAUUUCACAAUAAUAAUUUUUACUUAUAUACCAUCUUUCAACUGAACAUUUCAGUUCUUCCAAGAGCUUCUUAGAGUAGUAUAUUUUGGGGGCAGUCAAGGAAUAAACUACAGUGUAAACAUAUCCCAGAUGAAAACUGCUGUAUGGAAAAAUGACAGAAAGUAACUGAUUGACACUGUUGAUUCACAGUUCAGCCUCCUAUCUGGGAAAGACAUUUCUUUCCUCUGCUCACUPUAAGAЖCUUUUACCGACUCCAAAAAUCUCAGGAAUUAAACUUUUAЖCAGUUACAGCAAUAAAGAAUAGUUAGUACUCCAAAAAUAUUAUAUUUAAGAUGCUCAACAAGAAAAAAAUGCAAAUGUAAUAUUUUUUUCAAAUUACUUCUPUAUUGACUUGUCCAAAUUUCAAAAGUGCCUACCCUUCAAUAAAACUUUUUUAUUCUGAUCUCCAUAAAUUACUUAGUCUUCUAUGUAUAGCUAUCAAGGAAAUAAAACCAAUUUUGCCACAGCCACAACUGUAAAUGUUUUUGUACCCAUGCUGAAACUCAUAACAACACAGACAUAAAAAUAGCUGUGAGGUUUUGCUUUUUUUGUUGUCAGCUAUCUUAAGAAUCAUUAAAUACACCUGCUUUGGGUAAAACUCUUUGCAAGCAGUAAUUAACACUAGUAЖCAGUGAAAGCACAAGAUUUCCAAAUCAGUCGUUUUCUCAAAAAAAUAUCGUAUAAGUGACUCAPCCUGUCUGCUAACUCCAGACCUCCCAGCUUGAAGCCAAAUCUUUCCAUGUGAGAUUGAUAUGGAUUUCCUAGAAGUACUGGAAUGUUGUCAUAUCUUGCCCUAUUUUAAUUCUGCUAUAGAAAACAAUUGCCUUCACUUUUAAGGAGUAAUUUGAAUAUUAAUAACUCUGGUCUAGAUUUUCAUAUAAUGUAUUAAAGACAAAGUAGUGAACAUCAAUGAACAUCUGAUAGAGAUAAACUGUAAUCAGGCAUAAGCUUGUUUGUAUGUUCUGGCAGUGACUAAUCAGUAAAUGAUGUCGGUUUGCCCAGUAUCACUUAUCUUCUGUAUUUUUCCUCUGUCGUGUAAAUAGUAUAACCUUUUCAUUUAUGGACAAUUUUUUGGACUAGUAGCCUUCAAUAUACAUUCUGCUUUGAAUUAAUUUUUUCAAAUCAAUAAAUUAUGUAGACAUUUAAAAUCAAAUAUCAAGUAGAAUUGAAAAAUGUGAGUUACAUAAGUUAAAAACUUACUUUAAAUCUUACCUUCUAUAGGUAGCUCUAAAUAAAUUCAUAUGGUUAUAUGGCAUCUCUGGUGUAUACUGAUUGAGAAAAUAAUUAAACUGAAGUUAGGGGAGGGG
Sequence (SHORT NAMES ENCODING)	GCUUUAUUGUUUGCUUGUUUUGUUCCGGAGUCGGGGCCGGGAGGGAGUGCAGGAGGAGGGAUCCAAGCUUCCAAGCCUCUGCUCCGCUCUCCUUCUAUCCAGUUGGUCUUUAGGGCACUGAAGGAAACUCUUCUUCAGAAAUAACCUUUUAACUUUUCUUCUGUCAGCUGCCUGCCAAUCACGGAGCCAGAGGCUGAGGGGAGGCUUUGAGCCGGUCUGCGAGUCCGGAAGGCAAAGAUCGCGAAGCUUGGCGCUCCAGAACGCUCAGGGGGCAGGUGACACAGUCGUGGGUUCCCCGGCGGGCGCUGGCUUGACAGUUUCCUCCCCGCCCACUGGCAGGGGAGCGCCCCGCCGGGCUGCACGCGCGCGCGCGCAGGGGGGCAUAAAAGCCGCGGCCGCGCGGAGACGCGGAGCUCGCCCACCGCCCGCCCCAGCAGUGGCUGCACCAUGCACGUGAACGGCAAAGUGGCGCUGGUGACCGGCGCGGCUCAGGGCAUAGGCAGAGCCUUUGCAGAGGCGCUGCUGCUUAAGGGCGCCAAGGUAGCGCUGGUGGAUUGGAAUCUUGAAGCAGGUGUACAGUGUAAAGCUGCCCUGGAUGAGCAGUUUGAACCUCAGAAGACUCUGUUCAUCCAGUGCGAUGUGGCUGACCAGCAACAACUGAGAGGUUUCUGUUAUCAGUGGAACCUAUCUUGGUUUGGAUUACAUGAGUAAGCAAAAUGGAGGUGAAGGCGGCAUCAUUAUCAAUAUGUCAUCUYUAGCAGGACUCAUGCCCGUUGCACAGCAGCCGGUUUAUUGUGCUUCAAAGCAUGGCAUAGUUGGAUUCACACGCUCAGCAGCGUUGGCUGCUAAUCUUAUGAACAGUGGUGUGAGACUGAAUGCCAUUUGUCCAGGCUUUGUUAm6ACACAGCCAYCCUUGAAUCAAUUGAAAAAGAAGAAAACAUGGGACAAUAUAUAGAAUAUAAGGAUCAUAUCAAGGAUAUGAUUAAAUACUAUGGAAUUUUGGACCCACCAUUGAUUGCCAAUGGAUUGAUAm6ACACUCAUUGAAGAUGAUGCUYUAAAUGGUGCUAUUAUGAAGAUCACAACUUCUAAGGGAAUUCAUUUUCAAGACUAUGAUACAACUCCAUUUCAAGCAAAAACCCAAUGAACAGCUUAUGUGUUAGCCAUAGCUGAAAAUAAGCACAAAUAGCUUAUAUUCAGAUCCUAUCUUCAUUUGAAUAUAGCUUUUAAAUGAAAUGUUACAGUUUGAAGUUUUCCUUCAUGCACUUGGUGAUAAACGUUUUCUAAAUUUUUAGUUAAGUAUAUGGAUAAAAAGUUAUGAACUAUUAAAAAUGUGAUGUGGACCAAAGGCUAGGUUGUAAUCUUGAUAGUCUAAAAAAUGAUCAAAACAAAUGAUUUUCAAGGAAUAUUCAAUAUUCUGCCUUUCAGAAAGUGUAUUUAUAUCUGUGCUUCAUAAAUAUUAAUGUUCUUCAGAACAUCAUUUUAAAGGAGAUACUUGAAUUGUUAUUUAAAUCAAACCAGAUGUAAAACACUCACAUACAAGUUCAUACUYUAAAAGAGGAAAGCUACUUAm6ACAAUGACAAAUAUUUCACAAUAAUAAUUUUUACUUAUAUACCAUCUUUCAACUGAACAUUUCAGUUCUUCCAAGAGCUUCUUAGAGUAGUAUAUUUUGGGGGCAGUCAAGGAAUAAACUACAGUGUAAACAUAUCCCAGAUGAAAACUGCUGUAUGGAAAAAUGACAGAAAGUAACUGAUUGACACUGUUGAUUCACAGUUCAGCCUCCUAUCUGGGAAAGACAUUUCUUUCCUCUGCUCACUYUAAGAm6ACUUUUACCGACUCCAAAAAUCUCAGGAAUUAAACUUUUAm6ACAGUUACAGCAAUAAAGAAUAGUUAGUACUCCAAAAAUAUUAUAUUUAAGAUGCUCAACAAGAAAAAAAUGCAAAUGUAAUAUUUUUUUCAAAUUACUUCUYUAUUGACUUGUCCAAAUUUCAAAAGUGCCUACCCUUCAAUAAAACUUUUUUAUUCUGAUCUCCAUAAAUUACUUAGUCUUCUAUGUAUAGCUAUCAAGGAAAUAAAACCAAUUUUGCCACAGCCACAACUGUAAAUGUUUUUGUACCCAUGCUGAAACUCAUAACAACACAGACAUAAAAAUAGCUGUGAGGUUUUGCUUUUUUUGUUGUCAGCUAUCUUAAGAAUCAUUAAAUACACCUGCUUUGGGUAAAACUCUUUGCAAGCAGUAAUUAACACUAGUAm6ACAGUGAAAGCACAAGAUUUCCAAAUCAGUCGUUUUCUCAAAAAAAUAUCGUAUAAGUGACUCAYCCUGUCUGCUAACUCCAGACCUCCCAGCUUGAAGCCAAAUCUUUCCAUGUGAGAUUGAUAUGGAUUUCCUAGAAGUACUGGAAUGUUGUCAUAUCUUGCCCUAUUUUAAUUCUGCUAUAGAAAACAAUUGCCUUCACUUUUAAGGAGUAAUUUGAAUAUUAAUAACUCUGGUCUAGAUUUUCAUAUAAUGUAUUAAAGACAAAGUAGUGAACAUCAAUGAACAUCUGAUAGAGAUAAACUGUAAUCAGGCAUAAGCUUGUUUGUAUGUUCUGGCAGUGACUAAUCAGUAAAUGAUGUCGGUUUGCCCAGUAUCACUUAUCUUCUGUAUUUUUCCUCUGUCGUGUAAAUAGUAUAACCUUUUCAUUUAUGGACAAUUUUUUGGACUAGUAGCCUUCAAUAUACAUUCUGCUUUGAAUUAAUUUUUUCAAAUCAAUAAAUUAUGUAGACAUUUAAAAUCAAAUAUCAAGUAGAAUUGAAAAAUGUGAGUUACAUAAGUUAAAAACUUACUUUAAAUCUUACCUUCUAUAGGUAGCUCUAAAUAAAUUCAUAUGGUUAUAUGGCAUCUCUGGUGUAUACUGAUUGAGAAAAUAAUUAAACUGAAGUUAGGGGAGGGG
Sequence (MODOMICS CODE ENCODING)	GCUUUAUUGUUUGCUUGUUUUGUUCCGGAGUCGGGGCCGGGAGGGAGUGCAGGAGGAGGGAUCCAAGCUUCCAAGCCUCUGCUCCGCUCUCCUUCUAUCCAGUUGGUCUUUAGGGCACUGAAGGAAACUCUUCUUCAGAAAUAACCUUUUAACUUUUCUUCUGUCAGCUGCCUGCCAAUCACGGAGCCAGAGGCUGAGGGGAGGCUUUGAGCCGGUCUGCGAGUCCGGAAGGCAAAGAUCGCGAAGCUUGGCGCUCCAGAACGCUCAGGGGGCAGGUGACACAGUCGUGGGUUCCCCGGCGGGCGCUGGCUUGACAGUUUCCUCCCCGCCCACUGGCAGGGGAGCGCCCCGCCGGGCUGCACGCGCGCGCGCGCAGGGGGGCAUAAAAGCCGCGGCCGCGCGGAGACGCGGAGCUCGCCCACCGCCCGCCCCAGCAGUGGCUGCACCAUGCACGUGAACGGCAAAGUGGCGCUGGUGACCGGCGCGGCUCAGGGCAUAGGCAGAGCCUUUGCAGAGGCGCUGCUGCUUAAGGGCGCCAAGGUAGCGCUGGUGGAUUGGAAUCUUGAAGCAGGUGUACAGUGUAAAGCUGCCCUGGAUGAGCAGUUUGAACCUCAGAAGACUCUGUUCAUCCAGUGCGAUGUGGCUGACCAGCAACAACUGAGAGGUUUCUGUUAUCAGUGGAACCUAUCUUGGUUUGGAUUACAUGAGUAAGCAAAAUGGAGGUGAAGGCGGCAUCAUUAUCAAUAUGUCAUCU2000000009UUAGCAGGACUCAUGCCCGUUGCACAGCAGCCGGUUUAUUGUGCUUCAAAGCAUGGCAUAGUUGGAUUCACACGCUCAGCAGCGUUGGCUGCUAAUCUUAUGAACAGUGGUGUGAGACUGAAUGCCAUUUGUCCAGGCUUUGUUA2000000006ACACAGCCA2000000009UCCUUGAAUCAAUUGAAAAAGAAGAAAACAUGGGACAAUAUAUAGAAUAUAAGGAUCAUAUCAAGGAUAUGAUUAAAUACUAUGGAAUUUUGGACCCACCAUUGAUUGCCAAUGGAUUGAUA2000000006ACACUCAUUGAAGAUGAUGCU2000000009UUAAAUGGUGCUAUUAUGAAGAUCACAACUUCUAAGGGAAUUCAUUUUCAAGACUAUGAUACAACUCCAUUUCAAGCAAAAACCCAAUGAACAGCUUAUGUGUUAGCCAUAGCUGAAAAUAAGCACAAAUAGCUUAUAUUCAGAUCCUAUCUUCAUUUGAAUAUAGCUUUUAAAUGAAAUGUUACAGUUUGAAGUUUUCCUUCAUGCACUUGGUGAUAAACGUUUUCUAAAUUUUUAGUUAAGUAUAUGGAUAAAAAGUUAUGAACUAUUAAAAAUGUGAUGUGGACCAAAGGCUAGGUUGUAAUCUUGAUAGUCUAAAAAAUGAUCAAAACAAAUGAUUUUCAAGGAAUAUUCAAUAUUCUGCCUUUCAGAAAGUGUAUUUAUAUCUGUGCUUCAUAAAUAUUAAUGUUCUUCAGAACAUCAUUUUAAAGGAGAUACUUGAAUUGUUAUUUAAAUCAAACCAGAUGUAAAACACUCACAUACAAGUUCAUACU2000000009UUAAAAGAGGAAAGCUACUUA2000000006ACAAUGACAAAUAUUUCACAAUAAUAAUUUUUACUUAUAUACCAUCUUUCAACUGAACAUUUCAGUUCUUCCAAGAGCUUCUUAGAGUAGUAUAUUUUGGGGGCAGUCAAGGAAUAAACUACAGUGUAAACAUAUCCCAGAUGAAAACUGCUGUAUGGAAAAAUGACAGAAAGUAACUGAUUGACACUGUUGAUUCACAGUUCAGCCUCCUAUCUGGGAAAGACAUUUCUUUCCUCUGCUCACU2000000009UUAAGA2000000006ACUUUUACCGACUCCAAAAAUCUCAGGAAUUAAACUUUUA2000000006ACAGUUACAGCAAUAAAGAAUAGUUAGUACUCCAAAAAUAUUAUAUUUAAGAUGCUCAACAAGAAAAAAAUGCAAAUGUAAUAUUUUUUUCAAAUUACUUCU2000000009UUAUUGACUUGUCCAAAUUUCAAAAGUGCCUACCCUUCAAUAAAACUUUUUUAUUCUGAUCUCCAUAAAUUACUUAGUCUUCUAUGUAUAGCUAUCAAGGAAAUAAAACCAAUUUUGCCACAGCCACAACUGUAAAUGUUUUUGUACCCAUGCUGAAACUCAUAACAACACAGACAUAAAAAUAGCUGUGAGGUUUUGCUUUUUUUGUUGUCAGCUAUCUUAAGAAUCAUUAAAUACACCUGCUUUGGGUAAAACUCUUUGCAAGCAGUAAUUAACACUAGUA2000000006ACAGUGAAAGCACAAGAUUUCCAAAUCAGUCGUUUUCUCAAAAAAAUAUCGUAUAAGUGACUCA2000000009UCCUGUCUGCUAACUCCAGACCUCCCAGCUUGAAGCCAAAUCUUUCCAUGUGAGAUUGAUAUGGAUUUCCUAGAAGUACUGGAAUGUUGUCAUAUCUUGCCCUAUUUUAAUUCUGCUAUAGAAAACAAUUGCCUUCACUUUUAAGGAGUAAUUUGAAUAUUAAUAACUCUGGUCUAGAUUUUCAUAUAAUGUAUUAAAGACAAAGUAGUGAACAUCAAUGAACAUCUGAUAGAGAUAAACUGUAAUCAGGCAUAAGCUUGUUUGUAUGUUCUGGCAGUGACUAAUCAGUAAAUGAUGUCGGUUUGCCCAGUAUCACUUAUCUUCUGUAUUUUUCCUCUGUCGUGUAAAUAGUAUAACCUUUUCAUUUAUGGACAAUUUUUUGGACUAGUAGCCUUCAAUAUACAUUCUGCUUUGAAUUAAUUUUUUCAAAUCAAUAAAUUAUGUAGACAUUUAAAAUCAAAUAUCAAGUAGAAUUGAAAAAUGUGAGUUACAUAAGUUAAAAACUUACUUUAAAUCUUACCUUCUAUAGGUAGCUCUAAAUAAAUUCAUAUGGUUAUAUGGCAUCUCUGGUGUAUACUGAUUGAGAAAAUAAUUAAACUGAAGUUAGGGGAGGGG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	755	900	909	1031	1052	1546	1567	1811	1817	1857	1959	2242	2306
Modification Positions	Y	m6A	Y	m6A	Y	Y	m6A	Y	m6A	m6A	Y	m6A	Y
Genomic Coordinates	4:174508702:-	4:174493253:-	4:174493244:-	4:174492066:-	4:174492045:-	4:174491551:-	4:174491530:-	4:174491286:-	4:174491280:-	4:174491240:-	4:174491138:-	4:174490855:-	4:174490791:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr	8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	8cMbzB4aD5Se ArijeGVTwYBw BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr