Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000507105
Gene ID: ENSG00000083857
Gene Name: FAT1
Sequence (UNICHARACTER ENCODING) GUCGACAACGGAGGCUUUGUUUGCCAGUGUAGAGGAUUAUAUACUGGUCAGAGGUGUCAGCUUAGUCCAUACUGCAAAGAUGAACCCUGUAAGAAUGGCGGAACAUGCUUUGACAGUUUGGAUGGCGCCGUUUGUCAGUGUGAUUCGGGUUUUAGGGGAGAAAGGUGUCAGAGUGAUAUCGACGAGUGCUCUGGAAACCCUUGCCUGCACGGGGCCCUCUGUGAGAACACGCACGGCUCCUAUCACUGCAACUGCAGCCACGAGUACAGGGGACGUCACUGCGAGGAUGCUGCGCCCAACCACAAAAGUGGUGGAUCUUGAUCCCUGUCUUUCCAAGAAGCCUCUAGAGGAAAAGCCUUCCCAGCCAUACAGUGCCCGGGAAAGCCUGUCUGAAGUGCAGUCUCUGAGCUCCUUCCAGUCCGAAUCGUGCGAUGACAAUGGGUAUCACUGGGAUACAUCAGAUUGGAUGCCAAGCGUUCCUCUGCCGGACAUACAAGAGUUCCCCAACUAUGAGGUGAUUGAUGAGCAGACACCCCUGUACUCAGCAGAUCCAAACGCCAUCGAUACGGЖCUAUUACCCUGGAGGCUACGACAUCGAAAGUGAUUUUCCUCCACCCCCAGAAGACUUCCCCGCAGCUGAUGAGCUACCACCGUUACCGCCCGAAUUCAGCAAUCAGUUUGAAUCCAUCCACCCUCCUAGAGЖCAUGCCUGCCGCGGGUAGCUUGGGUUCUUCAUCAAGAAACCGGCAGAGGUUCAACUUGAAUCAGUAUUUGCCCAAUUUUUAUCCCCUCGAUAUGUCUGAЖCCUCAAACAAAAGGCЖCUGGUGAGAAUAGUЖCUUGUAGAGAACCCCAUGCCC
Sequence (SHORT NAMES ENCODING) GUCGACAACGGAGGCUUUGUUUGCCAGUGUAGAGGAUUAUAUACUGGUCAGAGGUGUCAGCUUAGUCCAUACUGCAAAGAUGAACCCUGUAAGAAUGGCGGAACAUGCUUUGACAGUUUGGAUGGCGCCGUUUGUCAGUGUGAUUCGGGUUUUAGGGGAGAAAGGUGUCAGAGUGAUAUCGACGAGUGCUCUGGAAACCCUUGCCUGCACGGGGCCCUCUGUGAGAACACGCACGGCUCCUAUCACUGCAACUGCAGCCACGAGUACAGGGGACGUCACUGCGAGGAUGCUGCGCCCAACCACAAAAGUGGUGGAUCUUGAUCCCUGUCUUUCCAAGAAGCCUCUAGAGGAAAAGCCUUCCCAGCCAUACAGUGCCCGGGAAAGCCUGUCUGAAGUGCAGUCUCUGAGCUCCUUCCAGUCCGAAUCGUGCGAUGACAAUGGGUAUCACUGGGAUACAUCAGAUUGGAUGCCAAGCGUUCCUCUGCCGGACAUACAAGAGUUCCCCAACUAUGAGGUGAUUGAUGAGCAGACACCCCUGUACUCAGCAGAUCCAAACGCCAUCGAUACGGm6ACUAUUACCCUGGAGGCUACGACAUCGAAAGUGAUUUUCCUCCACCCCCAGAAGACUUCCCCGCAGCUGAUGAGCUACCACCGUUACCGCCCGAAUUCAGCAAUCAGUUUGAAUCCAUCCACCCUCCUAGAGm6ACAUGCCUGCCGCGGGUAGCUUGGGUUCUUCAUCAAGAAACCGGCAGAGGUUCAACUUGAAUCAGUAUUUGCCCAAUUUUUAUCCCCUCGAUAUGUCUGAm6ACCUCAAACAAAAGGCm6ACUGGUGAGAAUAGUm6ACUUGUAGAGAACCCCAUGCCC
Sequence (MODOMICS CODE ENCODING) GUCGACAACGGAGGCUUUGUUUGCCAGUGUAGAGGAUUAUAUACUGGUCAGAGGUGUCAGCUUAGUCCAUACUGCAAAGAUGAACCCUGUAAGAAUGGCGGAACAUGCUUUGACAGUUUGGAUGGCGCCGUUUGUCAGUGUGAUUCGGGUUUUAGGGGAGAAAGGUGUCAGAGUGAUAUCGACGAGUGCUCUGGAAACCCUUGCCUGCACGGGGCCCUCUGUGAGAACACGCACGGCUCCUAUCACUGCAACUGCAGCCACGAGUACAGGGGACGUCACUGCGAGGAUGCUGCGCCCAACCACAAAAGUGGUGGAUCUUGAUCCCUGUCUUUCCAAGAAGCCUCUAGAGGAAAAGCCUUCCCAGCCAUACAGUGCCCGGGAAAGCCUGUCUGAAGUGCAGUCUCUGAGCUCCUUCCAGUCCGAAUCGUGCGAUGACAAUGGGUAUCACUGGGAUACAUCAGAUUGGAUGCCAAGCGUUCCUCUGCCGGACAUACAAGAGUUCCCCAACUAUGAGGUGAUUGAUGAGCAGACACCCCUGUACUCAGCAGAUCCAAACGCCAUCGAUACGG2000000006ACUAUUACCCUGGAGGCUACGACAUCGAAAGUGAUUUUCCUCCACCCCCAGAAGACUUCCCCGCAGCUGAUGAGCUACCACCGUUACCGCCCGAAUUCAGCAAUCAGUUUGAAUCCAUCCACCCUCCUAGAG2000000006ACAUGCCUGCCGCGGGUAGCUUGGGUUCUUCAUCAAGAAACCGGCAGAGGUUCAACUUGAAUCAGUAUUUGCCCAAUUUUUAUCCCCUCGAUAUGUCUGA2000000006ACCUCAAACAAAAGGC2000000006ACUGGUGAGAAUAGU2000000006ACUUGUAGAGAACCCCAUGCCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 570 702 802 818 833
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 4:186589091:- 4:186588959:- 4:186588859:- 4:186588843:- 4:186588828:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
6UuHp6YApVKv
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
KRfQJWH4K5KH
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
93arJtwJmuS9
nfCHyrYzE6fB
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
3TeAZFYFxgvp
6AyXsheySjfx
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QpiKdbVikVz2
UN3tNpbCPHYf
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
D6ncpa2PPWj3
KENzb7mwdBd9
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
S9vNeQQYrhac
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
D6ncpa2PPWj3
Lny8GcCeVGc9
UKen6WEino9G