General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000542407
Gene ID:	ENSG00000163110
Gene Name:	PDLIM5
Sequence (UNICHARACTER ENCODING)	GUCUGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACCCGAGCAUAUUUCAUUUUCUGUCAUUGGACUUUGAGCCAUUAGAACCAUGAGCAACUACAGUGUGUCACUGGUUGGCCCAGCUCCUUGGGGUUUCCGGCUGCAGGGCGGUAAGGAUUUCAACAUGCCUCUGACAAUCUCUAGUCUAAAAGAUGGCGGCAAGGCAGCCCAGGCAAAUGUAAGAAUAGGCGAUGUGGUUCUCAGCAUUGAUGGAAUAAAUGCACAAGGAAUGACUCAUCUUGAAGCCCAGAAUAAGAUUAAGGGUUGUACAGGCUCUUUGAAUAUGACUCUGCAAAGAGCAUCUGCUGCACCCAAGCCUGAGCCGGUUCCUGUUCAAAAGCCCACAGUCACCAGCGUGUGUUCCGAGACUUCUCAGGAGCUAGCAGAGGGACAGAGAAGAGGAUCCCAGGGUGACAGUAAACAGCAAAAUGGCCCACCAAGAAAACACAUUGUGGAGCGCUAUACAGAGUUUUAUCAUGUACCCACUCACAGUGAUGCCAGCAAGAAGAGACUGAUUGAGGAUACUGAAGACUGGCGUCCAAGGACUGGAACAACUCAGUCUCGCUCUUUCCGAAUCCUUGCCCAGAUCACUGGGACUGAACAUUUGAAAGAAUCUGAAGCCGAUAAUACAAAGAAGGCAAAUAACUCUCAGGAGCCUUCUCCGCAGUUGGCUUCCUCGGUAGCUUCCACACGGAGCAUGCCCGAGAGCCUGGACAGCCCAACCUCUGGCAGACCAGGGGUUACCAGCCUCACAGCUGCAGCUGCCUUCAAGCCUGUAGGAUCCACUGGCGUCAUCAAGUCACCAAGCUGGCAACGGCCAAACCAAGGAGUACCUUCCACUGGAAGAAUCUCAAACAGCGCUACUUACUCAGGAUCAGUGGCACCAGCCAACUCAGCUUUGGGACAAACCCAGCCAAGUGACCAGGACACUUUAGUGCAAAGAGCUGAGCACAUUCCAGCAGGGAAACGAACUCCGAUGUGCGCCCAUUGUAACCAGGUCAUCAGAGGACCAUUCUUAGUGGCACUGGGGAAAUCUUGGCACCCAGAAGAAUUCAACUGCGCUCACUGCAAAAAUACAAUGGCCUACAUUGGAUUUGUAGAGGAGAAAGGAGCCCUGUAUUGUGAGCUGUGCUAUGAGAAAUUCUUUGCCCCUGAAUGUGGUCGAUGCCAAAGGAAGAUCCUUGGAGAAGUCAUCAGUGCGUUGAAACAAACUUGGCAUGUUUCCUGUUUUGUGUGUGUAGCCUGUGGAAAGCCCAUUCGGAACAAUGUUUUUCACUUGGAGGAUGGUGAACCCUACUGUGAGACUGAUUAUUAUGCCCUCUUUGGUACUAUAUGCCAUGGAUGUGAAUUUCCCAUAGAAGCUGGUGACAUGUUCCUGGAAGCUCUGGGCUACACCUGGCAUGACACUUGCUUUGUAUGCUCAGUGUGUUGUGAAAGUUUGGAAGGUCAGACCUUUUUCUCCAAGAAGGACAAGCCCCUGUGUAAGAAACAUGCUCAUUCUGUGAAUUUUUGAAAGUCAACAGUUCAGGAGAAGAGAAGGAAUUUGAAGAGAAAAAGGAAAAUUAAAAUUACUAAUUAAUUUUUAGAUUCAAUAUUUAUAUGGAGUUUUGAAAAAUAAUAGUGGCCCUGAAGGAAUAAAUUCCAGCUPUAAAAACCAAGUCUGAGGAAAUAUUUGGCUUCAUAAAGUAAAGAGACGGUUUGGCAUUUAUUAUUACUUUUUCCUGUAUUUUAUGCCCAUAAAAUAAGCUUUAUAAAAACCAAUUUCCUGAUGGЖCUAUUAAAUUCAUCUUAGAAUAAAUUAGUGAAGAAUUUAAUUUUAGAAUAAAUAAUCCAAUCUGAAAUAAUUAUACCUUCUUUCCUUGUUAGGUAGUUAUGAGUAAAUCUGCAAAAGGCAAUGAAAAUGCCUUAAAUUUUAUCAAUAACAGAAUUAUUGUAUUUAAAAAAAAACUAAUACUUAUCUPUAAAAUAGUAAAUAGGAUUUUAAЖCAGAGAAUUUUAUCAGUAAUAGGUGUCAGUUUUUAAAAAAUUGCUUGUAGGCUGAGCGCGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGUGGGUGGACCACAUGAGGUCAGGAGUUUGAGAUCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAAUUAGCCGGACGCAGUGGCACGCGCCUGUAAUCCCAGCUACUCAAGAGGCUGAGGCACGAGAAUCACUUGAACCCGGGAGGGAGAGGUUGCAGUGAGCCAAGAUCGUACCACUGCACUCCAGCCUGGGUGACAGAGUGAGACUCUGUCUCCAAAAAAAAACUUUGCUUGUAUAUUAUUUUUGCCUUACAGUGGAUCAUUCUAGUAGGAAAGGACAAUAAGAUUUUUUAUCAAAAUGUGUCAUGCCAGUAAGAGAUGUUAUAUUCUUUUCUCAUUUCUUCCCCACCCAAAAAUAAGCUACCAUAUAGCUUAUAAGUCUCAAAUUUUUGCCUUUUACUAAAAUGUGAUUGUUUCUAUUCAUUGUGUAUGCUUCAUCACCUAUAUUAGGCAAAUUCCAUUUUUUUCCCUUGUGCUAAGGUAAAGAUUUAAUUAAAUAAUUUUGGCCUCUCAUAGUUUUCUCUCUCUPUAAAGAGAAUAAAUAGAGGGCCAGGUGUGGUGGCUCACGCCUGUGAUCCCAGCACUUUGGGAGGCCAAGACGGGCGGAUCAUGAGGUCAAGAGAUCAAGAUCAPCCUGGCCAACAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAUGAGCUGGGCAUGGUGGGGCGUGCCUGUAGUCCCAUGUACUUGGGAGGCUGAGGCAGGAAAAUUCUUGAACCCAGGAGACGGAAGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGGUGACAGAGCAAGACUCCGGCUCUUAAAAAAAAAAAAAAAAAAA
Sequence (SHORT NAMES ENCODING)	GUCUGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACCCGAGCAUAUUUCAUUUUCUGUCAUUGGACUUUGAGCCAUUAGAACCAUGAGCAACUACAGUGUGUCACUGGUUGGCCCAGCUCCUUGGGGUUUCCGGCUGCAGGGCGGUAAGGAUUUCAACAUGCCUCUGACAAUCUCUAGUCUAAAAGAUGGCGGCAAGGCAGCCCAGGCAAAUGUAAGAAUAGGCGAUGUGGUUCUCAGCAUUGAUGGAAUAAAUGCACAAGGAAUGACUCAUCUUGAAGCCCAGAAUAAGAUUAAGGGUUGUACAGGCUCUUUGAAUAUGACUCUGCAAAGAGCAUCUGCUGCACCCAAGCCUGAGCCGGUUCCUGUUCAAAAGCCCACAGUCACCAGCGUGUGUUCCGAGACUUCUCAGGAGCUAGCAGAGGGACAGAGAAGAGGAUCCCAGGGUGACAGUAAACAGCAAAAUGGCCCACCAAGAAAACACAUUGUGGAGCGCUAUACAGAGUUUUAUCAUGUACCCACUCACAGUGAUGCCAGCAAGAAGAGACUGAUUGAGGAUACUGAAGACUGGCGUCCAAGGACUGGAACAACUCAGUCUCGCUCUUUCCGAAUCCUUGCCCAGAUCACUGGGACUGAACAUUUGAAAGAAUCUGAAGCCGAUAAUACAAAGAAGGCAAAUAACUCUCAGGAGCCUUCUCCGCAGUUGGCUUCCUCGGUAGCUUCCACACGGAGCAUGCCCGAGAGCCUGGACAGCCCAACCUCUGGCAGACCAGGGGUUACCAGCCUCACAGCUGCAGCUGCCUUCAAGCCUGUAGGAUCCACUGGCGUCAUCAAGUCACCAAGCUGGCAACGGCCAAACCAAGGAGUACCUUCCACUGGAAGAAUCUCAAACAGCGCUACUUACUCAGGAUCAGUGGCACCAGCCAACUCAGCUUUGGGACAAACCCAGCCAAGUGACCAGGACACUUUAGUGCAAAGAGCUGAGCACAUUCCAGCAGGGAAACGAACUCCGAUGUGCGCCCAUUGUAACCAGGUCAUCAGAGGACCAUUCUUAGUGGCACUGGGGAAAUCUUGGCACCCAGAAGAAUUCAACUGCGCUCACUGCAAAAAUACAAUGGCCUACAUUGGAUUUGUAGAGGAGAAAGGAGCCCUGUAUUGUGAGCUGUGCUAUGAGAAAUUCUUUGCCCCUGAAUGUGGUCGAUGCCAAAGGAAGAUCCUUGGAGAAGUCAUCAGUGCGUUGAAACAAACUUGGCAUGUUUCCUGUUUUGUGUGUGUAGCCUGUGGAAAGCCCAUUCGGAACAAUGUUUUUCACUUGGAGGAUGGUGAACCCUACUGUGAGACUGAUUAUUAUGCCCUCUUUGGUACUAUAUGCCAUGGAUGUGAAUUUCCCAUAGAAGCUGGUGACAUGUUCCUGGAAGCUCUGGGCUACACCUGGCAUGACACUUGCUUUGUAUGCUCAGUGUGUUGUGAAAGUUUGGAAGGUCAGACCUUUUUCUCCAAGAAGGACAAGCCCCUGUGUAAGAAACAUGCUCAUUCUGUGAAUUUUUGAAAGUCAACAGUUCAGGAGAAGAGAAGGAAUUUGAAGAGAAAAAGGAAAAUUAAAAUUACUAAUUAAUUUUUAGAUUCAAUAUUUAUAUGGAGUUUUGAAAAAUAAUAGUGGCCCUGAAGGAAUAAAUUCCAGCUYUAAAAACCAAGUCUGAGGAAAUAUUUGGCUUCAUAAAGUAAAGAGACGGUUUGGCAUUUAUUAUUACUUUUUCCUGUAUUUUAUGCCCAUAAAAUAAGCUUUAUAAAAACCAAUUUCCUGAUGGm6ACUAUUAAAUUCAUCUUAGAAUAAAUUAGUGAAGAAUUUAAUUUUAGAAUAAAUAAUCCAAUCUGAAAUAAUUAUACCUUCUUUCCUUGUUAGGUAGUUAUGAGUAAAUCUGCAAAAGGCAAUGAAAAUGCCUUAAAUUUUAUCAAUAACAGAAUUAUUGUAUUUAAAAAAAAACUAAUACUUAUCUYUAAAAUAGUAAAUAGGAUUUUAAm6ACAGAGAAUUUUAUCAGUAAUAGGUGUCAGUUUUUAAAAAAUUGCUUGUAGGCUGAGCGCGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGUGGGUGGACCACAUGAGGUCAGGAGUUUGAGAUCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAAUUAGCCGGACGCAGUGGCACGCGCCUGUAAUCCCAGCUACUCAAGAGGCUGAGGCACGAGAAUCACUUGAACCCGGGAGGGAGAGGUUGCAGUGAGCCAAGAUCGUACCACUGCACUCCAGCCUGGGUGACAGAGUGAGACUCUGUCUCCAAAAAAAAACUUUGCUUGUAUAUUAUUUUUGCCUUACAGUGGAUCAUUCUAGUAGGAAAGGACAAUAAGAUUUUUUAUCAAAAUGUGUCAUGCCAGUAAGAGAUGUUAUAUUCUUUUCUCAUUUCUUCCCCACCCAAAAAUAAGCUACCAUAUAGCUUAUAAGUCUCAAAUUUUUGCCUUUUACUAAAAUGUGAUUGUUUCUAUUCAUUGUGUAUGCUUCAUCACCUAUAUUAGGCAAAUUCCAUUUUUUUCCCUUGUGCUAAGGUAAAGAUUUAAUUAAAUAAUUUUGGCCUCUCAUAGUUUUCUCUCUCUYUAAAGAGAAUAAAUAGAGGGCCAGGUGUGGUGGCUCACGCCUGUGAUCCCAGCACUUUGGGAGGCCAAGACGGGCGGAUCAUGAGGUCAAGAGAUCAAGAUCAYCCUGGCCAACAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAUGAGCUGGGCAUGGUGGGGCGUGCCUGUAGUCCCAUGUACUUGGGAGGCUGAGGCAGGAAAAUUCUUGAACCCAGGAGACGGAAGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGGUGACAGAGCAAGACUCCGGCUCUUAAAAAAAAAAAAAAAAAAA
Sequence (MODOMICS CODE ENCODING)	GUCUGAGGCGGAGGCAGCCCCGCGCCGCGCCGGACCCGAGCAUAUUUCAUUUUCUGUCAUUGGACUUUGAGCCAUUAGAACCAUGAGCAACUACAGUGUGUCACUGGUUGGCCCAGCUCCUUGGGGUUUCCGGCUGCAGGGCGGUAAGGAUUUCAACAUGCCUCUGACAAUCUCUAGUCUAAAAGAUGGCGGCAAGGCAGCCCAGGCAAAUGUAAGAAUAGGCGAUGUGGUUCUCAGCAUUGAUGGAAUAAAUGCACAAGGAAUGACUCAUCUUGAAGCCCAGAAUAAGAUUAAGGGUUGUACAGGCUCUUUGAAUAUGACUCUGCAAAGAGCAUCUGCUGCACCCAAGCCUGAGCCGGUUCCUGUUCAAAAGCCCACAGUCACCAGCGUGUGUUCCGAGACUUCUCAGGAGCUAGCAGAGGGACAGAGAAGAGGAUCCCAGGGUGACAGUAAACAGCAAAAUGGCCCACCAAGAAAACACAUUGUGGAGCGCUAUACAGAGUUUUAUCAUGUACCCACUCACAGUGAUGCCAGCAAGAAGAGACUGAUUGAGGAUACUGAAGACUGGCGUCCAAGGACUGGAACAACUCAGUCUCGCUCUUUCCGAAUCCUUGCCCAGAUCACUGGGACUGAACAUUUGAAAGAAUCUGAAGCCGAUAAUACAAAGAAGGCAAAUAACUCUCAGGAGCCUUCUCCGCAGUUGGCUUCCUCGGUAGCUUCCACACGGAGCAUGCCCGAGAGCCUGGACAGCCCAACCUCUGGCAGACCAGGGGUUACCAGCCUCACAGCUGCAGCUGCCUUCAAGCCUGUAGGAUCCACUGGCGUCAUCAAGUCACCAAGCUGGCAACGGCCAAACCAAGGAGUACCUUCCACUGGAAGAAUCUCAAACAGCGCUACUUACUCAGGAUCAGUGGCACCAGCCAACUCAGCUUUGGGACAAACCCAGCCAAGUGACCAGGACACUUUAGUGCAAAGAGCUGAGCACAUUCCAGCAGGGAAACGAACUCCGAUGUGCGCCCAUUGUAACCAGGUCAUCAGAGGACCAUUCUUAGUGGCACUGGGGAAAUCUUGGCACCCAGAAGAAUUCAACUGCGCUCACUGCAAAAAUACAAUGGCCUACAUUGGAUUUGUAGAGGAGAAAGGAGCCCUGUAUUGUGAGCUGUGCUAUGAGAAAUUCUUUGCCCCUGAAUGUGGUCGAUGCCAAAGGAAGAUCCUUGGAGAAGUCAUCAGUGCGUUGAAACAAACUUGGCAUGUUUCCUGUUUUGUGUGUGUAGCCUGUGGAAAGCCCAUUCGGAACAAUGUUUUUCACUUGGAGGAUGGUGAACCCUACUGUGAGACUGAUUAUUAUGCCCUCUUUGGUACUAUAUGCCAUGGAUGUGAAUUUCCCAUAGAAGCUGGUGACAUGUUCCUGGAAGCUCUGGGCUACACCUGGCAUGACACUUGCUUUGUAUGCUCAGUGUGUUGUGAAAGUUUGGAAGGUCAGACCUUUUUCUCCAAGAAGGACAAGCCCCUGUGUAAGAAACAUGCUCAUUCUGUGAAUUUUUGAAAGUCAACAGUUCAGGAGAAGAGAAGGAAUUUGAAGAGAAAAAGGAAAAUUAAAAUUACUAAUUAAUUUUUAGAUUCAAUAUUUAUAUGGAGUUUUGAAAAAUAAUAGUGGCCCUGAAGGAAUAAAUUCCAGCU2000000009UUAAAAACCAAGUCUGAGGAAAUAUUUGGCUUCAUAAAGUAAAGAGACGGUUUGGCAUUUAUUAUUACUUUUUCCUGUAUUUUAUGCCCAUAAAAUAAGCUUUAUAAAAACCAAUUUCCUGAUGG2000000006ACUAUUAAAUUCAUCUUAGAAUAAAUUAGUGAAGAAUUUAAUUUUAGAAUAAAUAAUCCAAUCUGAAAUAAUUAUACCUUCUUUCCUUGUUAGGUAGUUAUGAGUAAAUCUGCAAAAGGCAAUGAAAAUGCCUUAAAUUUUAUCAAUAACAGAAUUAUUGUAUUUAAAAAAAAACUAAUACUUAUCU2000000009UUAAAAUAGUAAAUAGGAUUUUAA2000000006ACAGAGAAUUUUAUCAGUAAUAGGUGUCAGUUUUUAAAAAAUUGCUUGUAGGCUGAGCGCGGUGGCUCACGCCUGUAAUCCCAGCACUUUGGGAGGCCAAGGUGGGUGGACCACAUGAGGUCAGGAGUUUGAGAUCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAAUUAGCCGGACGCAGUGGCACGCGCCUGUAAUCCCAGCUACUCAAGAGGCUGAGGCACGAGAAUCACUUGAACCCGGGAGGGAGAGGUUGCAGUGAGCCAAGAUCGUACCACUGCACUCCAGCCUGGGUGACAGAGUGAGACUCUGUCUCCAAAAAAAAACUUUGCUUGUAUAUUAUUUUUGCCUUACAGUGGAUCAUUCUAGUAGGAAAGGACAAUAAGAUUUUUUAUCAAAAUGUGUCAUGCCAGUAAGAGAUGUUAUAUUCUUUUCUCAUUUCUUCCCCACCCAAAAAUAAGCUACCAUAUAGCUUAUAAGUCUCAAAUUUUUGCCUUUUACUAAAAUGUGAUUGUUUCUAUUCAUUGUGUAUGCUUCAUCACCUAUAUUAGGCAAAUUCCAUUUUUUUCCCUUGUGCUAAGGUAAAGAUUUAAUUAAAUAAUUUUGGCCUCUCAUAGUUUUCUCUCUCU2000000009UUAAAGAGAAUAAAUAGAGGGCCAGGUGUGGUGGCUCACGCCUGUGAUCCCAGCACUUUGGGAGGCCAAGACGGGCGGAUCAUGAGGUCAAGAGAUCAAGAUCA2000000009UCCUGGCCAACAUGGUGAAACCCUGUCUCUACUAAAAAUACAAAAAUGAGCUGGGCAUGGUGGGGCGUGCCUGUAGUCCCAUGUACUUGGGAGGCUGAGGCAGGAAAAUUCUUGAACCCAGGAGACGGAAGUUGCAGUGAGCUGAGAUCACACCACUGCACUCCAGCCUGGUGACAGAGCAAGACUCCGGCUCUUAAAAAAAAAAAAAAAAAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1681	1806	1993	2017	2662	2766
Modification Positions	Y	m6A	Y	m6A	Y	Y
Genomic Coordinates	4:94664202:+	4:94664327:+	4:94664514:+	4:94664538:+	4:94665183:+	4:94665287:+
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr	BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr	bXBqJigD9oV3 f6YSioLdAWpr