General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000355080
Gene ID:	ENSG00000164093
Gene Name:	PITX2
Sequence (UNICHARACTER ENCODING)	UGGGAGUCCGUGCUCCUGCUCCUCGGUUGGCUCCUAAGUGCCCCGCCAGGUCCCCUCUCCUUUCGCUCUCCCGGCUCCGGCUCCCGACUCUUCGGCCCGCUGGCAUCUGCUUCCCUCCCCUGCCUCGUUUCUCGUCGCCCCUGCUCGCUCCCCCCGGCGCUCGCCCGGGCGCUGUGCUCGCUCCUGGAUCGCCAGCCGCGCAGCCGGGCUCGGCCGGCCGCCCGCGCGCCACUGUGCAGUGGAGUUUGGUGGAAUCUCUGCUGACGUCACGUCACUCCCCACACGGAGUAGGAGCAGAGGGAAGAGAGAGGGAUGAGAGGGAGGGAGAGGAGAGAGAGUGCGAGACCGAGCGAGAAAGCUGGAGAGGAGCAGAAAGAAACUGCCAGUGGCGGCUAGAUUUCGGAGGCCCCAGUGCACCCGUGGACUCCUUCGGAACUUGGCACCCUCAGGAGCCCUGCAGUCCUCUCAGGCCCGGCUUUCGGGCGCUUGCCGUGCAGCCGGAGGCUCGGCUCGCUGGAAAUCGCCCCGGGAAGCAGUGGGACGCGGAGACAGCAGCUCUCUCCCGGUAGCCGAUAACGGGGAAUGGAGЖCCAACUGCCGCAAACUGGUGUCGGCGUGUGUGCAAUUAGAGAAAGAUAAAAGCCAGCAGGGGAAGAAUGAGGACGUGGGCGCCGAGGACCCGUCUAAGAAGAAGCGGCAAAGGCGGCAGCGGACUCACUUUACCAGCCAGCAGCUCCAGGAGCUGGAGGCCACUUUCCAGAGGAACCGCUACCCGGACAUGUCCACACGCGAAGAAAUCGCUGUGUGGACCAACCUUACGGAAGCCCGAGUCCGGGUUUGGUUCAAGAAUCGUCGGGCCAAAUGGAGAAAGAGGGAGCGCAACCAGCAGGCCGAGCUAUGCAAGAAUGGCUUCGGGCCGCAGUUCAAUGGGCUCAUGCAGCCCUACGACGACAUGUACCCAGGCUAUUCCUACAACAACUGGGCCGCCAAGGGCCUUACAPCCGCCUCCCUAUCCACCAAGAGCUUCCCCUUCUUCAACUCUAUGAACGUCAACCCCCUGUCAUCACAGAGCAUGUUUUCCCCACCCAACUCUAUCUCGUCCAUGAGCAUGUCGUCCAGCAUGGUGCCCUCAGCAGUGACAGGCGUCCCGGGCUCCAGUCUCAACAGCCUGAAUAЖCUUGAACAACCUGAGUAGCCCGUCGCUGAAUUCCGCGGUGCCGACGCCUGCCUGUCCUUACGCGCCGCCGACUCCPCCGUAUGUUUAUAGGGЖCACGUGUAACUCGAGCCUGGCCAGCCUGAGЖCUGAAAGCAAAGCAGCACUCCAGCUUCGGCUACGCCAGCGUGCAGAACCCGGCCUCCAACCUGAGUGCUUGCCAGUAUGCAGUGGACCGGCCCGUGUGAGCCGCACCCACAGCGCCGGGAUCCUAGGЖCCUUGCCGGAUGGGGCAACUCCGCCCUUGAAAGЖCUGGGAAUUAUGCUAGAAGGUCGUGGGCACUAAAGAAAGGGAGAGAAAGAGAAGCUAUAUAGAGAAAAGGAAACCACUGAAUCAAAGAGAGAGCUCCUUUGAUUUCAAAGGGAUGUCCUCAGUGUCUGACAUCUUUCACUACAAGUAUUUCUAACAGUUGCAAGGЖCACAUACACAAACAAAUGUUUGЖCUGGAUAUGACAUUUUAACAUUACUAUAAGCUUGUUAUUUUUUAAGUUUAGCAUUGUUAACAUUUAAAUGACUGAAAGGAUGUAUAUAUAUCGAAAUGUCAAAUUAAUUUUAUAAAAGCAGUUGUUAGUAAUAUCACAACAGUGUUUUUAAAGGUUAGGCUPUAAAAUAAAGCAUGUUAUACAGAAGCGAUUAGGAUUUUUCGCUUGCGAGCAAGGGAGUGUAUAUACUAAAUGCCACACUGUAUGUUUCUAACAUAUUAUUAUUAUUAUAAAAAAUGUGUGAAUAUCAGUUUUAGAAUAGUUUCUCUGGUGGAUGCAAUGAUGUUUCUGAAACUGCUAUGUACAACCUACCCUGUGUAUAACAUUUCGUACAAUAUUAUUGUUUUACUUUUCAGCAAAUAUGAAACAAAUGUGUUUUAUUUCAUGGGAGUAAAAUAUACUGCAUACAAA
Sequence (SHORT NAMES ENCODING)	UGGGAGUCCGUGCUCCUGCUCCUCGGUUGGCUCCUAAGUGCCCCGCCAGGUCCCCUCUCCUUUCGCUCUCCCGGCUCCGGCUCCCGACUCUUCGGCCCGCUGGCAUCUGCUUCCCUCCCCUGCCUCGUUUCUCGUCGCCCCUGCUCGCUCCCCCCGGCGCUCGCCCGGGCGCUGUGCUCGCUCCUGGAUCGCCAGCCGCGCAGCCGGGCUCGGCCGGCCGCCCGCGCGCCACUGUGCAGUGGAGUUUGGUGGAAUCUCUGCUGACGUCACGUCACUCCCCACACGGAGUAGGAGCAGAGGGAAGAGAGAGGGAUGAGAGGGAGGGAGAGGAGAGAGAGUGCGAGACCGAGCGAGAAAGCUGGAGAGGAGCAGAAAGAAACUGCCAGUGGCGGCUAGAUUUCGGAGGCCCCAGUGCACCCGUGGACUCCUUCGGAACUUGGCACCCUCAGGAGCCCUGCAGUCCUCUCAGGCCCGGCUUUCGGGCGCUUGCCGUGCAGCCGGAGGCUCGGCUCGCUGGAAAUCGCCCCGGGAAGCAGUGGGACGCGGAGACAGCAGCUCUCUCCCGGUAGCCGAUAACGGGGAAUGGAGm6ACCAACUGCCGCAAACUGGUGUCGGCGUGUGUGCAAUUAGAGAAAGAUAAAAGCCAGCAGGGGAAGAAUGAGGACGUGGGCGCCGAGGACCCGUCUAAGAAGAAGCGGCAAAGGCGGCAGCGGACUCACUUUACCAGCCAGCAGCUCCAGGAGCUGGAGGCCACUUUCCAGAGGAACCGCUACCCGGACAUGUCCACACGCGAAGAAAUCGCUGUGUGGACCAACCUUACGGAAGCCCGAGUCCGGGUUUGGUUCAAGAAUCGUCGGGCCAAAUGGAGAAAGAGGGAGCGCAACCAGCAGGCCGAGCUAUGCAAGAAUGGCUUCGGGCCGCAGUUCAAUGGGCUCAUGCAGCCCUACGACGACAUGUACCCAGGCUAUUCCUACAACAACUGGGCCGCCAAGGGCCUUACAYCCGCCUCCCUAUCCACCAAGAGCUUCCCCUUCUUCAACUCUAUGAACGUCAACCCCCUGUCAUCACAGAGCAUGUUUUCCCCACCCAACUCUAUCUCGUCCAUGAGCAUGUCGUCCAGCAUGGUGCCCUCAGCAGUGACAGGCGUCCCGGGCUCCAGUCUCAACAGCCUGAAUAm6ACUUGAACAACCUGAGUAGCCCGUCGCUGAAUUCCGCGGUGCCGACGCCUGCCUGUCCUUACGCGCCGCCGACUCCYCCGUAUGUUUAUAGGGm6ACACGUGUAACUCGAGCCUGGCCAGCCUGAGm6ACUGAAAGCAAAGCAGCACUCCAGCUUCGGCUACGCCAGCGUGCAGAACCCGGCCUCCAACCUGAGUGCUUGCCAGUAUGCAGUGGACCGGCCCGUGUGAGCCGCACCCACAGCGCCGGGAUCCUAGGm6ACCUUGCCGGAUGGGGCAACUCCGCCCUUGAAAGm6ACUGGGAAUUAUGCUAGAAGGUCGUGGGCACUAAAGAAAGGGAGAGAAAGAGAAGCUAUAUAGAGAAAAGGAAACCACUGAAUCAAAGAGAGAGCUCCUUUGAUUUCAAAGGGAUGUCCUCAGUGUCUGACAUCUUUCACUACAAGUAUUUCUAACAGUUGCAAGGm6ACACAUACACAAACAAAUGUUUGm6ACUGGAUAUGACAUUUUAACAUUACUAUAAGCUUGUUAUUUUUUAAGUUUAGCAUUGUUAACAUUUAAAUGACUGAAAGGAUGUAUAUAUAUCGAAAUGUCAAAUUAAUUUUAUAAAAGCAGUUGUUAGUAAUAUCACAACAGUGUUUUUAAAGGUUAGGCUYUAAAAUAAAGCAUGUUAUACAGAAGCGAUUAGGAUUUUUCGCUUGCGAGCAAGGGAGUGUAUAUACUAAAUGCCACACUGUAUGUUUCUAACAUAUUAUUAUUAUUAUAAAAAAUGUGUGAAUAUCAGUUUUAGAAUAGUUUCUCUGGUGGAUGCAAUGAUGUUUCUGAAACUGCUAUGUACAACCUACCCUGUGUAUAACAUUUCGUACAAUAUUAUUGUUUUACUUUUCAGCAAAUAUGAAACAAAUGUGUUUUAUUUCAUGGGAGUAAAAUAUACUGCAUACAAA
Sequence (MODOMICS CODE ENCODING)	UGGGAGUCCGUGCUCCUGCUCCUCGGUUGGCUCCUAAGUGCCCCGCCAGGUCCCCUCUCCUUUCGCUCUCCCGGCUCCGGCUCCCGACUCUUCGGCCCGCUGGCAUCUGCUUCCCUCCCCUGCCUCGUUUCUCGUCGCCCCUGCUCGCUCCCCCCGGCGCUCGCCCGGGCGCUGUGCUCGCUCCUGGAUCGCCAGCCGCGCAGCCGGGCUCGGCCGGCCGCCCGCGCGCCACUGUGCAGUGGAGUUUGGUGGAAUCUCUGCUGACGUCACGUCACUCCCCACACGGAGUAGGAGCAGAGGGAAGAGAGAGGGAUGAGAGGGAGGGAGAGGAGAGAGAGUGCGAGACCGAGCGAGAAAGCUGGAGAGGAGCAGAAAGAAACUGCCAGUGGCGGCUAGAUUUCGGAGGCCCCAGUGCACCCGUGGACUCCUUCGGAACUUGGCACCCUCAGGAGCCCUGCAGUCCUCUCAGGCCCGGCUUUCGGGCGCUUGCCGUGCAGCCGGAGGCUCGGCUCGCUGGAAAUCGCCCCGGGAAGCAGUGGGACGCGGAGACAGCAGCUCUCUCCCGGUAGCCGAUAACGGGGAAUGGAG2000000006ACCAACUGCCGCAAACUGGUGUCGGCGUGUGUGCAAUUAGAGAAAGAUAAAAGCCAGCAGGGGAAGAAUGAGGACGUGGGCGCCGAGGACCCGUCUAAGAAGAAGCGGCAAAGGCGGCAGCGGACUCACUUUACCAGCCAGCAGCUCCAGGAGCUGGAGGCCACUUUCCAGAGGAACCGCUACCCGGACAUGUCCACACGCGAAGAAAUCGCUGUGUGGACCAACCUUACGGAAGCCCGAGUCCGGGUUUGGUUCAAGAAUCGUCGGGCCAAAUGGAGAAAGAGGGAGCGCAACCAGCAGGCCGAGCUAUGCAAGAAUGGCUUCGGGCCGCAGUUCAAUGGGCUCAUGCAGCCCUACGACGACAUGUACCCAGGCUAUUCCUACAACAACUGGGCCGCCAAGGGCCUUACA2000000009UCCGCCUCCCUAUCCACCAAGAGCUUCCCCUUCUUCAACUCUAUGAACGUCAACCCCCUGUCAUCACAGAGCAUGUUUUCCCCACCCAACUCUAUCUCGUCCAUGAGCAUGUCGUCCAGCAUGGUGCCCUCAGCAGUGACAGGCGUCCCGGGCUCCAGUCUCAACAGCCUGAAUA2000000006ACUUGAACAACCUGAGUAGCCCGUCGCUGAAUUCCGCGGUGCCGACGCCUGCCUGUCCUUACGCGCCGCCGACUCC2000000009UCCGUAUGUUUAUAGGG2000000006ACACGUGUAACUCGAGCCUGGCCAGCCUGAG2000000006ACUGAAAGCAAAGCAGCACUCCAGCUUCGGCUACGCCAGCGUGCAGAACCCGGCCUCCAACCUGAGUGCUUGCCAGUAUGCAGUGGACCGGCCCGUGUGAGCCGCACCCACAGCGCCGGGAUCCUAGG2000000006ACCUUGCCGGAUGGGGCAACUCCGCCCUUGAAAG2000000006ACUGGGAAUUAUGCUAGAAGGUCGUGGGCACUAAAGAAAGGGAGAGAAAGAGAAGCUAUAUAGAGAAAAGGAAACCACUGAAUCAAAGAGAGAGCUCCUUUGAUUUCAAAGGGAUGUCCUCAGUGUCUGACAUCUUUCACUACAAGUAUUUCUAACAGUUGCAAGG2000000006ACACAUACACAAACAAAUGUUUG2000000006ACUGGAUAUGACAUUUUAACAUUACUAUAAGCUUGUUAUUUUUUAAGUUUAGCAUUGUUAACAUUUAAAUGACUGAAAGGAUGUAUAUAUAUCGAAAUGUCAAAUUAAUUUUAUAAAAGCAGUUGUUAGUAAUAUCACAACAGUGUUUUUAAAGGUUAGGCU2000000009UUAAAAUAAAGCAUGUUAUACAGAAGCGAUUAGGAUUUUUCGCUUGCGAGCAAGGGAGUGUAUAUACUAAAUGCCACACUGUAUGUUUCUAACAUAUUAUUAUUAUUAUAAAAAAUGUGUGAAUAUCAGUUUUAGAAUAGUUUCUCUGGUGGAUGCAAUGAUGUUUCUGAAACUGCUAUGUACAACCUACCCUGUGUAUAACAUUUCGUACAAUAUUAUUGUUUUACUUUUCAGCAAAUAUGAAACAAAUGUGUUUUAUUUCAUGGGAGUAAAAUAUACUGCAUACAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	589	1000	1175	1251	1268	1299	1427	1461	1627	1650	1812
Modification Positions	m6A	Y	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	Y
Genomic Coordinates	4:110632992:-	4:110618523:-	4:110618348:-	4:110618272:-	4:110618255:-	4:110618224:-	4:110618096:-	4:110618062:-	4:110617896:-	4:110617873:-	4:110617711:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb Ap2q43bQLNek gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H V5PvfiKsgFMd VyCX26p5UBRL Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BkoLW2CBToyL BtsJQJ3DteUq Yfn77uLS5tv8	Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq Yfn77uLS5tv8	msuJfBpJvM5H VyCX26p5UBRL KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq Yfn77uLS5tv8	BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8