General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000542333
Gene ID:	ENSG00000187555
Gene Name:	USP7
Sequence (UNICHARACTER ENCODING)	AAGAACAAGAUUGCACUCUGAGAGAAGGAAGGCAUGGUGAAGAGGUGGUGUUGUGGUGGGCCUUAAAGUAGGCUUAGGACUUGAGCUCGGGGAUUUGGAGCGGGAGAUACAGAUGACCCACCAAGAAUUACUCAGAACCCUGUGAUCAAUGGGAAUGUGGCCCUGAGUGAUGGACACAACACCGCGGAGGAGGACAUGGAGGAUGACACCAGUUGGCGCUCCGAGGCAACCUUUCAGUUCACUGUGGAGCGCUUCAGCAGACUGAGUGAGUCGGUCCUUAGCCCUCCGUGUUUUGUGCGAAAUCUGCCAUGGAAGAUUAUGGUGAUGCCACGCUUUUAUCCAGACAGACCACACCAAAAAAGCGUAGGAUUCUUUCUCCAGUGCAAUGCUGAAUCUGAUUCCACGUCAUGGUCUUGCCAUGCACAAGCAGUGCUGAAGAUAAUAAAUUACAGAGAUGAUGAAAAGUCGUUCAGUCGUCGUAUUAGUCAUUUGUUCUUCCAUAAAGAAAAUGAUUGGGGAUUUUCCAAUUUUAUGGCCUGGAGUGAAGUGACCGAUCCUGAGAAAGGAUUUAUAGAUGAUGACAAAGUUACCUUUGAAGUCUUUGUACAGGCGGAUGCUCCCCAUGGAGUUGCGUGGGAUUCAAAGAAGCACACAGGCUACGUCGGCUUAAAGAAUCAGGGAGCGACUUGUUACAUGAЖCAGCCUGCUACAGACGUUAUUUUUCACGAAUCAGCUACGAAAGGCUGUGUACAUGAUGCCAACCGAGGGGGAUGAUUCGUCUAAAAGCGUCCCUPUAGCAUUACAAAGAGUGUUCUAUGAAUUACAGCAUAGUGAUAAACCUGUAGGAACAAAAAAGUUAЖCAAAGUCAUUUGGGUGGGAAACUPUAGAUAGCUUCAUGCAACAUGAUGUUCAGGAGCUUUGUCGAGUGUUGCUCGAUAAUGUGGAAAAUAAGAUGAAAGGCACCUGUGUAGAGGGCACCAUACCCAAAUUAUUCCGCGGCAAAAUGGUGUCCUAUAUCCAGUGUAAAGAAGUAGACUAUCGGUCUGAUAGAAGAGAAGAUUAUUAUGAUAUCCAGCUAAGUAUCAAAGGAAAGAAAAAUAUAUUUGAAUCAUUUGUGGAUUAUGUGGCAGUAGAЖCAGCUCGAUGGGGACAAUAAAUACGACGCUGGGGAACAUGGCUUACAGGAAGCAGAGAAAGGUGUGAAAUUCCUAЖCAUUGCCACCAGUGUUACAUCUACAACUGAUGAGAUUUAUGUAUGACCCUCAGACGGACCAAAAUAUCAAGAUCAAUGAUAGGUUUGAAUUCCCAGAGCAGUUACCACUUGAUGAAUUUUUGCAAAAAACAGAUCCUAAGGACCCUGCAAAUUAUAUUCUUCAUGCAGUCCUGGUUCAUAGUGGAGAUAAUCAUGGUGGACAUUAUGUGGUUUAUCUAAACCCCAAAGGGGAUGGCAAAUGGUGUAAAUUUGAUGACGACGUGGUGUCAAGGUGUACUAAAGAGGAAGCAAUUGAGCACAAUUAUGGGGGUCACGAUGACGACCUGUCUGUUCGACACUGCACUAAUGCUUACAUGUUAGUCUACAUCAGGGAAUCAAAACUGACAGUUGGUGGAGCGAUUACAAGAAGAGAAAAGGAUCGAGGCUCAGAAGCGGAAGGAGCGGCAGGAAGCCCAUCUCUAUAUGCAAGUGCAGAUAGUCGCAGAGGACCAGUUUUGUGGCCACCAAGGGAAUGACAUGUACGAUGAAGAAAAAGUGAAAUACACUGUGUUCAAAGUAUUGAAGAACUCCUCGCUUGCUGAGUUUGUUCAGAGCCUCUCUCAGACCAUGGGAUUUCCACAAGAUCAAAUUCGAUUGUGGCCCAUGCAAGCAAGGAGUAAUGGAACAAAACGACCAGCAAUGUUAGAUAAUGAAGCCGACGGCAAUAAAACAAUGAUUGAGCUCAGUGAUAAUGAAAACCCUUGGACAAUAUUCCUG
Sequence (SHORT NAMES ENCODING)	AAGAACAAGAUUGCACUCUGAGAGAAGGAAGGCAUGGUGAAGAGGUGGUGUUGUGGUGGGCCUUAAAGUAGGCUUAGGACUUGAGCUCGGGGAUUUGGAGCGGGAGAUACAGAUGACCCACCAAGAAUUACUCAGAACCCUGUGAUCAAUGGGAAUGUGGCCCUGAGUGAUGGACACAACACCGCGGAGGAGGACAUGGAGGAUGACACCAGUUGGCGCUCCGAGGCAACCUUUCAGUUCACUGUGGAGCGCUUCAGCAGACUGAGUGAGUCGGUCCUUAGCCCUCCGUGUUUUGUGCGAAAUCUGCCAUGGAAGAUUAUGGUGAUGCCACGCUUUUAUCCAGACAGACCACACCAAAAAAGCGUAGGAUUCUUUCUCCAGUGCAAUGCUGAAUCUGAUUCCACGUCAUGGUCUUGCCAUGCACAAGCAGUGCUGAAGAUAAUAAAUUACAGAGAUGAUGAAAAGUCGUUCAGUCGUCGUAUUAGUCAUUUGUUCUUCCAUAAAGAAAAUGAUUGGGGAUUUUCCAAUUUUAUGGCCUGGAGUGAAGUGACCGAUCCUGAGAAAGGAUUUAUAGAUGAUGACAAAGUUACCUUUGAAGUCUUUGUACAGGCGGAUGCUCCCCAUGGAGUUGCGUGGGAUUCAAAGAAGCACACAGGCUACGUCGGCUUAAAGAAUCAGGGAGCGACUUGUUACAUGAm6ACAGCCUGCUACAGACGUUAUUUUUCACGAAUCAGCUACGAAAGGCUGUGUACAUGAUGCCAACCGAGGGGGAUGAUUCGUCUAAAAGCGUCCCUYUAGCAUUACAAAGAGUGUUCUAUGAAUUACAGCAUAGUGAUAAACCUGUAGGAACAAAAAAGUUAm6ACAAAGUCAUUUGGGUGGGAAACUYUAGAUAGCUUCAUGCAACAUGAUGUUCAGGAGCUUUGUCGAGUGUUGCUCGAUAAUGUGGAAAAUAAGAUGAAAGGCACCUGUGUAGAGGGCACCAUACCCAAAUUAUUCCGCGGCAAAAUGGUGUCCUAUAUCCAGUGUAAAGAAGUAGACUAUCGGUCUGAUAGAAGAGAAGAUUAUUAUGAUAUCCAGCUAAGUAUCAAAGGAAAGAAAAAUAUAUUUGAAUCAUUUGUGGAUUAUGUGGCAGUAGAm6ACAGCUCGAUGGGGACAAUAAAUACGACGCUGGGGAACAUGGCUUACAGGAAGCAGAGAAAGGUGUGAAAUUCCUAm6ACAUUGCCACCAGUGUUACAUCUACAACUGAUGAGAUUUAUGUAUGACCCUCAGACGGACCAAAAUAUCAAGAUCAAUGAUAGGUUUGAAUUCCCAGAGCAGUUACCACUUGAUGAAUUUUUGCAAAAAACAGAUCCUAAGGACCCUGCAAAUUAUAUUCUUCAUGCAGUCCUGGUUCAUAGUGGAGAUAAUCAUGGUGGACAUUAUGUGGUUUAUCUAAACCCCAAAGGGGAUGGCAAAUGGUGUAAAUUUGAUGACGACGUGGUGUCAAGGUGUACUAAAGAGGAAGCAAUUGAGCACAAUUAUGGGGGUCACGAUGACGACCUGUCUGUUCGACACUGCACUAAUGCUUACAUGUUAGUCUACAUCAGGGAAUCAAAACUGACAGUUGGUGGAGCGAUUACAAGAAGAGAAAAGGAUCGAGGCUCAGAAGCGGAAGGAGCGGCAGGAAGCCCAUCUCUAUAUGCAAGUGCAGAUAGUCGCAGAGGACCAGUUUUGUGGCCACCAAGGGAAUGACAUGUACGAUGAAGAAAAAGUGAAAUACACUGUGUUCAAAGUAUUGAAGAACUCCUCGCUUGCUGAGUUUGUUCAGAGCCUCUCUCAGACCAUGGGAUUUCCACAAGAUCAAAUUCGAUUGUGGCCCAUGCAAGCAAGGAGUAAUGGAACAAAACGACCAGCAAUGUUAGAUAAUGAAGCCGACGGCAAUAAAACAAUGAUUGAGCUCAGUGAUAAUGAAAACCCUUGGACAAUAUUCCUG
Sequence (MODOMICS CODE ENCODING)	AAGAACAAGAUUGCACUCUGAGAGAAGGAAGGCAUGGUGAAGAGGUGGUGUUGUGGUGGGCCUUAAAGUAGGCUUAGGACUUGAGCUCGGGGAUUUGGAGCGGGAGAUACAGAUGACCCACCAAGAAUUACUCAGAACCCUGUGAUCAAUGGGAAUGUGGCCCUGAGUGAUGGACACAACACCGCGGAGGAGGACAUGGAGGAUGACACCAGUUGGCGCUCCGAGGCAACCUUUCAGUUCACUGUGGAGCGCUUCAGCAGACUGAGUGAGUCGGUCCUUAGCCCUCCGUGUUUUGUGCGAAAUCUGCCAUGGAAGAUUAUGGUGAUGCCACGCUUUUAUCCAGACAGACCACACCAAAAAAGCGUAGGAUUCUUUCUCCAGUGCAAUGCUGAAUCUGAUUCCACGUCAUGGUCUUGCCAUGCACAAGCAGUGCUGAAGAUAAUAAAUUACAGAGAUGAUGAAAAGUCGUUCAGUCGUCGUAUUAGUCAUUUGUUCUUCCAUAAAGAAAAUGAUUGGGGAUUUUCCAAUUUUAUGGCCUGGAGUGAAGUGACCGAUCCUGAGAAAGGAUUUAUAGAUGAUGACAAAGUUACCUUUGAAGUCUUUGUACAGGCGGAUGCUCCCCAUGGAGUUGCGUGGGAUUCAAAGAAGCACACAGGCUACGUCGGCUUAAAGAAUCAGGGAGCGACUUGUUACAUGA2000000006ACAGCCUGCUACAGACGUUAUUUUUCACGAAUCAGCUACGAAAGGCUGUGUACAUGAUGCCAACCGAGGGGGAUGAUUCGUCUAAAAGCGUCCCU2000000009UUAGCAUUACAAAGAGUGUUCUAUGAAUUACAGCAUAGUGAUAAACCUGUAGGAACAAAAAAGUUA2000000006ACAAAGUCAUUUGGGUGGGAAACU2000000009UUAGAUAGCUUCAUGCAACAUGAUGUUCAGGAGCUUUGUCGAGUGUUGCUCGAUAAUGUGGAAAAUAAGAUGAAAGGCACCUGUGUAGAGGGCACCAUACCCAAAUUAUUCCGCGGCAAAAUGGUGUCCUAUAUCCAGUGUAAAGAAGUAGACUAUCGGUCUGAUAGAAGAGAAGAUUAUUAUGAUAUCCAGCUAAGUAUCAAAGGAAAGAAAAAUAUAUUUGAAUCAUUUGUGGAUUAUGUGGCAGUAGA2000000006ACAGCUCGAUGGGGACAAUAAAUACGACGCUGGGGAACAUGGCUUACAGGAAGCAGAGAAAGGUGUGAAAUUCCUA2000000006ACAUUGCCACCAGUGUUACAUCUACAACUGAUGAGAUUUAUGUAUGACCCUCAGACGGACCAAAAUAUCAAGAUCAAUGAUAGGUUUGAAUUCCCAGAGCAGUUACCACUUGAUGAAUUUUUGCAAAAAACAGAUCCUAAGGACCCUGCAAAUUAUAUUCUUCAUGCAGUCCUGGUUCAUAGUGGAGAUAAUCAUGGUGGACAUUAUGUGGUUUAUCUAAACCCCAAAGGGGAUGGCAAAUGGUGUAAAUUUGAUGACGACGUGGUGUCAAGGUGUACUAAAGAGGAAGCAAUUGAGCACAAUUAUGGGGGUCACGAUGACGACCUGUCUGUUCGACACUGCACUAAUGCUUACAUGUUAGUCUACAUCAGGGAAUCAAAACUGACAGUUGGUGGAGCGAUUACAAGAAGAGAAAAGGAUCGAGGCUCAGAAGCGGAAGGAGCGGCAGGAAGCCCAUCUCUAUAUGCAAGUGCAGAUAGUCGCAGAGGACCAGUUUUGUGGCCACCAAGGGAAUGACAUGUACGAUGAAGAAAAAGUGAAAUACACUGUGUUCAAAGUAUUGAAGAACUCCUCGCUUGCUGAGUUUGUUCAGAGCCUCUCUCAGACCAUGGGAUUUCCACAAGAUCAAAUUCGAUUGUGGCCCAUGCAAGCAAGGAGUAAUGGAACAAAACGACCAGCAAUGUUAGAUAAUGAAGCCGACGGCAAUAAAACAAUGAUUGAGCUCAGUGAUAAUGAAAACCCUUGGACAAUAUUCCUG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	698	793	859	883	1134	1210
Modification Positions	m6A	Y	m6A	Y	m6A	m6A
Genomic Coordinates	16:8919074:-	16:8917105:-	16:8917039:-	16:8916546:-	16:8910793:-	16:8908423:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8