General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000329734
Gene ID:	ENSG00000177508
Gene Name:	IRX3
Sequence (UNICHARACTER ENCODING)	AGACAGACACCGACACACACCCCCCGCGCGGCACCCUAAGUGUCCACAACUUUUGGCUGCCUUACUUAGCCCAGGGCGCAGAGGCUGGAAAGGUCGCGGGGAGUAUCGUGUGAGUAAAGAGAGAGAUUUACAAAAUAGAAGUAGUGAGAAAGGAAGAAGUGAAGGGAACGGACCGGAGAGCAAAAGCCCUCGUGAGAAAGGGAAAGAGAAGGGGAGAGGAGAAAGGAGAGUUUCAUAGCGUCCAGGGCAGUGCAGGAGCCCGAAGCAGCGGAAGCGAUCCUGGGGGGAAGAGGAGUGCGGAGAGGGGAGGGGAGAGGAAGGGCGAGGAGGGGGAGUGAAAACUAGAGGAGGGCGAAGGAAGCGAGGCGCGACACUGCUGGGGAGAGGAGGGCAGUGAGGAGCGAGGAGCGGGCAGAGGCAGCUCCGGCGGCCGAGAGGAGGGAGCGCGGCGCAGAGAGGAGGGGCUUGCGCCCCGUAGAAAUGUCAAUCAGAGCCCGGAGCCCCGGGAAUCUCCGCCAAUCUGUUCGGACCUGACCUGGCUCCUCGCCGCCGCCCUCGCCGCCGCCGUCGCCGCCGCGGAGCAGAUCAAUAGGCGAACGCGGAGCACAGCGCAGCGCGGGCGGCAGCGCGGCCCCAAGCCCGGCCCAGCCCCCGAUGCGCGCCGGAGCCCGCGGGCGGCGCUGAGCUGGGCGGCCCGGGGGUCGGCCCCCCUCUCCGUCCGUGCCCCGCGGGCCACCAUGUCCUUCCCCCAGCUGGGAUACCAAUACAUCCGCCCGCUUUACCCGUCCGAGCGCCCGGGGGCCGCUGGCGGCAGCGGCGGCAGCGCGGGGGCCCGGGGCGGCCUGGGUGCCGGAGCCUCGGAGCUGAACGCCUCGGGGUCCCUGUCCAACGUGCUCUCGUCCGUGUACGGGGCGCCCUACGCCGCGGCCGCUGCGGCCGCCGCCGCCCAAGGCUACGGCGCCUUCCUGCCCUACGCCGCGGAGCUGCCCAUCUUCCCGCAGCUGGGCGCGCAGUAUGAGCUGAAGGACAGCCCCGGGGUGCAGCAUCCGGCCGCGGCUGCCGCGUUUCCGCACCCGCACCCCGCCUUCUACCCGUAUGGCCAGUACCAGUUCGGGGACCCGUCCCGUCCCAAGAACGCCACCAGGGAGAGCACCAGCACGCUGAAGGCCUGGCUCAACGAGCACCGCAAGAACCCCUACCCCACCAAGGGCGAGAAGAUCAUGCUGGCCAUCAUCACCAAGAUGACCCUCACCCAGGUGUCCACCUGGUUCGCCAACGCGCGCCGGCGCCUCAAGAAGGAGAAUAAGAUGACUUGGGCGCCUCGCAGCCGCACUGACGAGGAGGGAAACGCUUAUGGGAGCGAGCGCGAGGAGGAAGACGAAGAGGAGGACGAGGAGGACGGCAAACGCGAGCUAGAGCUGGAGGAGGAGGAGCUCGGGGGGGAGGAGGAGGACACGGGGGGCGAGGGCCUGGCUGACGACGACGAGGACGAGGAGAUCGAUUUGGAGAЖCUUAGACGGCGCGGCCACCGAGCCUGAGCUGUCCCUGGCUGGGGCGGCGCGCAGGGAUGGCGACCUAGGCCUGGGЖCCCAUUUCGGЖCUCCAAAAAUAGCGACUCGGAAGAUAGCUCUGAGGGCUUAGAGGACCGGCCACUACCGGUCCUGAGUCUGGCUCCAGCGCCACCACCAGUGGCCGUGGCCUCGCCGUCUCUGCCGUCGCCCCCCGUGAGCCUGGACCCCUGCGCUCCCGCACCAGCCCCCGCCUCCGCCCUGCAGAAGCCCAAGAUCUGGUCCCUCGCGGAGACUGCCACAAGCCCGGACAACCCGCGCCGCUCGCCUCCCGGCGCGGGGGGGUCUCCACCGGGGGCAGCGGUCGCGCCUUCCGCCCUGCAGCUCUCUCCGGCCGCCGCCGCCGCCGCCGCUCACAGЖCUGGUCUCAGCGCCGCUGGGCAAGUUCCCGGCUUGGACCAACCGGCCGUUUCCAGGCCCACCGCCCGGCCCCCGCCUGCACCCGCUCUCCCUGCUGGGCUCUGCCCCUCCGCACCUGCUGGGACUUCCCGGAGCCGCGGGCCACCCGGCUGCCGCCGCCGCCUUCGCUCGGCCAGCGGAGCCCGAAGGCGGAACAGAUCGCUGUAGUGCCUUGGAAGUGGAGAAAAAGUUACUCAAGACAGCUUUCCAGCCCGUGCCCAGGCGGCCCCAGAACCAUCUGGACGCCGCCCUGGUCUUAUCGGCUCUCUCCUCAPCCUAGUUCUUUAAAAAAAACAAAAAAACAAAAAAAACUUUUUUUAAUCGUUGUAAUAAUUGUAUAAAAAAAAUCGCUCUGUAUAGUUACAACUUGUAAGCAUGUCCGUGUAUAAAUACCUAAAAGCAAAACUAAЖCAAAGAAAGUAAGAAAAAGAAAUAAAACCAGUCCUCCUCAGCCCUCCCCAAGUCGCUUCUGUGGCACCCCGCAUUCGCUGUGAGGUUUGUUUGUCCGGUUGAUUUUGGGGGGUGGAGUUUCAGUGAGAAUAAACGUGUCUGCCUUUGUGUGUGUGUAUAUAUACAGAGAAAUGUACAUAUGUGUGAACCAAAUUGUACGAGAAAGUAUCUAUUUUUGGCUAAAUAAAUGAGCUGCUGCCACUUUGACUAUAA
Sequence (SHORT NAMES ENCODING)	AGACAGACACCGACACACACCCCCCGCGCGGCACCCUAAGUGUCCACAACUUUUGGCUGCCUUACUUAGCCCAGGGCGCAGAGGCUGGAAAGGUCGCGGGGAGUAUCGUGUGAGUAAAGAGAGAGAUUUACAAAAUAGAAGUAGUGAGAAAGGAAGAAGUGAAGGGAACGGACCGGAGAGCAAAAGCCCUCGUGAGAAAGGGAAAGAGAAGGGGAGAGGAGAAAGGAGAGUUUCAUAGCGUCCAGGGCAGUGCAGGAGCCCGAAGCAGCGGAAGCGAUCCUGGGGGGAAGAGGAGUGCGGAGAGGGGAGGGGAGAGGAAGGGCGAGGAGGGGGAGUGAAAACUAGAGGAGGGCGAAGGAAGCGAGGCGCGACACUGCUGGGGAGAGGAGGGCAGUGAGGAGCGAGGAGCGGGCAGAGGCAGCUCCGGCGGCCGAGAGGAGGGAGCGCGGCGCAGAGAGGAGGGGCUUGCGCCCCGUAGAAAUGUCAAUCAGAGCCCGGAGCCCCGGGAAUCUCCGCCAAUCUGUUCGGACCUGACCUGGCUCCUCGCCGCCGCCCUCGCCGCCGCCGUCGCCGCCGCGGAGCAGAUCAAUAGGCGAACGCGGAGCACAGCGCAGCGCGGGCGGCAGCGCGGCCCCAAGCCCGGCCCAGCCCCCGAUGCGCGCCGGAGCCCGCGGGCGGCGCUGAGCUGGGCGGCCCGGGGGUCGGCCCCCCUCUCCGUCCGUGCCCCGCGGGCCACCAUGUCCUUCCCCCAGCUGGGAUACCAAUACAUCCGCCCGCUUUACCCGUCCGAGCGCCCGGGGGCCGCUGGCGGCAGCGGCGGCAGCGCGGGGGCCCGGGGCGGCCUGGGUGCCGGAGCCUCGGAGCUGAACGCCUCGGGGUCCCUGUCCAACGUGCUCUCGUCCGUGUACGGGGCGCCCUACGCCGCGGCCGCUGCGGCCGCCGCCGCCCAAGGCUACGGCGCCUUCCUGCCCUACGCCGCGGAGCUGCCCAUCUUCCCGCAGCUGGGCGCGCAGUAUGAGCUGAAGGACAGCCCCGGGGUGCAGCAUCCGGCCGCGGCUGCCGCGUUUCCGCACCCGCACCCCGCCUUCUACCCGUAUGGCCAGUACCAGUUCGGGGACCCGUCCCGUCCCAAGAACGCCACCAGGGAGAGCACCAGCACGCUGAAGGCCUGGCUCAACGAGCACCGCAAGAACCCCUACCCCACCAAGGGCGAGAAGAUCAUGCUGGCCAUCAUCACCAAGAUGACCCUCACCCAGGUGUCCACCUGGUUCGCCAACGCGCGCCGGCGCCUCAAGAAGGAGAAUAAGAUGACUUGGGCGCCUCGCAGCCGCACUGACGAGGAGGGAAACGCUUAUGGGAGCGAGCGCGAGGAGGAAGACGAAGAGGAGGACGAGGAGGACGGCAAACGCGAGCUAGAGCUGGAGGAGGAGGAGCUCGGGGGGGAGGAGGAGGACACGGGGGGCGAGGGCCUGGCUGACGACGACGAGGACGAGGAGAUCGAUUUGGAGAm6ACUUAGACGGCGCGGCCACCGAGCCUGAGCUGUCCCUGGCUGGGGCGGCGCGCAGGGAUGGCGACCUAGGCCUGGGm6ACCCAUUUCGGm6ACUCCAAAAAUAGCGACUCGGAAGAUAGCUCUGAGGGCUUAGAGGACCGGCCACUACCGGUCCUGAGUCUGGCUCCAGCGCCACCACCAGUGGCCGUGGCCUCGCCGUCUCUGCCGUCGCCCCCCGUGAGCCUGGACCCCUGCGCUCCCGCACCAGCCCCCGCCUCCGCCCUGCAGAAGCCCAAGAUCUGGUCCCUCGCGGAGACUGCCACAAGCCCGGACAACCCGCGCCGCUCGCCUCCCGGCGCGGGGGGGUCUCCACCGGGGGCAGCGGUCGCGCCUUCCGCCCUGCAGCUCUCUCCGGCCGCCGCCGCCGCCGCCGCUCACAGm6ACUGGUCUCAGCGCCGCUGGGCAAGUUCCCGGCUUGGACCAACCGGCCGUUUCCAGGCCCACCGCCCGGCCCCCGCCUGCACCCGCUCUCCCUGCUGGGCUCUGCCCCUCCGCACCUGCUGGGACUUCCCGGAGCCGCGGGCCACCCGGCUGCCGCCGCCGCCUUCGCUCGGCCAGCGGAGCCCGAAGGCGGAACAGAUCGCUGUAGUGCCUUGGAAGUGGAGAAAAAGUUACUCAAGACAGCUUUCCAGCCCGUGCCCAGGCGGCCCCAGAACCAUCUGGACGCCGCCCUGGUCUUAUCGGCUCUCUCCUCAYCCUAGUUCUUUAAAAAAAACAAAAAAACAAAAAAAACUUUUUUUAAUCGUUGUAAUAAUUGUAUAAAAAAAAUCGCUCUGUAUAGUUACAACUUGUAAGCAUGUCCGUGUAUAAAUACCUAAAAGCAAAACUAAm6ACAAAGAAAGUAAGAAAAAGAAAUAAAACCAGUCCUCCUCAGCCCUCCCCAAGUCGCUUCUGUGGCACCCCGCAUUCGCUGUGAGGUUUGUUUGUCCGGUUGAUUUUGGGGGGUGGAGUUUCAGUGAGAAUAAACGUGUCUGCCUUUGUGUGUGUGUAUAUAUACAGAGAAAUGUACAUAUGUGUGAACCAAAUUGUACGAGAAAGUAUCUAUUUUUGGCUAAAUAAAUGAGCUGCUGCCACUUUGACUAUAA
Sequence (MODOMICS CODE ENCODING)	AGACAGACACCGACACACACCCCCCGCGCGGCACCCUAAGUGUCCACAACUUUUGGCUGCCUUACUUAGCCCAGGGCGCAGAGGCUGGAAAGGUCGCGGGGAGUAUCGUGUGAGUAAAGAGAGAGAUUUACAAAAUAGAAGUAGUGAGAAAGGAAGAAGUGAAGGGAACGGACCGGAGAGCAAAAGCCCUCGUGAGAAAGGGAAAGAGAAGGGGAGAGGAGAAAGGAGAGUUUCAUAGCGUCCAGGGCAGUGCAGGAGCCCGAAGCAGCGGAAGCGAUCCUGGGGGGAAGAGGAGUGCGGAGAGGGGAGGGGAGAGGAAGGGCGAGGAGGGGGAGUGAAAACUAGAGGAGGGCGAAGGAAGCGAGGCGCGACACUGCUGGGGAGAGGAGGGCAGUGAGGAGCGAGGAGCGGGCAGAGGCAGCUCCGGCGGCCGAGAGGAGGGAGCGCGGCGCAGAGAGGAGGGGCUUGCGCCCCGUAGAAAUGUCAAUCAGAGCCCGGAGCCCCGGGAAUCUCCGCCAAUCUGUUCGGACCUGACCUGGCUCCUCGCCGCCGCCCUCGCCGCCGCCGUCGCCGCCGCGGAGCAGAUCAAUAGGCGAACGCGGAGCACAGCGCAGCGCGGGCGGCAGCGCGGCCCCAAGCCCGGCCCAGCCCCCGAUGCGCGCCGGAGCCCGCGGGCGGCGCUGAGCUGGGCGGCCCGGGGGUCGGCCCCCCUCUCCGUCCGUGCCCCGCGGGCCACCAUGUCCUUCCCCCAGCUGGGAUACCAAUACAUCCGCCCGCUUUACCCGUCCGAGCGCCCGGGGGCCGCUGGCGGCAGCGGCGGCAGCGCGGGGGCCCGGGGCGGCCUGGGUGCCGGAGCCUCGGAGCUGAACGCCUCGGGGUCCCUGUCCAACGUGCUCUCGUCCGUGUACGGGGCGCCCUACGCCGCGGCCGCUGCGGCCGCCGCCGCCCAAGGCUACGGCGCCUUCCUGCCCUACGCCGCGGAGCUGCCCAUCUUCCCGCAGCUGGGCGCGCAGUAUGAGCUGAAGGACAGCCCCGGGGUGCAGCAUCCGGCCGCGGCUGCCGCGUUUCCGCACCCGCACCCCGCCUUCUACCCGUAUGGCCAGUACCAGUUCGGGGACCCGUCCCGUCCCAAGAACGCCACCAGGGAGAGCACCAGCACGCUGAAGGCCUGGCUCAACGAGCACCGCAAGAACCCCUACCCCACCAAGGGCGAGAAGAUCAUGCUGGCCAUCAUCACCAAGAUGACCCUCACCCAGGUGUCCACCUGGUUCGCCAACGCGCGCCGGCGCCUCAAGAAGGAGAAUAAGAUGACUUGGGCGCCUCGCAGCCGCACUGACGAGGAGGGAAACGCUUAUGGGAGCGAGCGCGAGGAGGAAGACGAAGAGGAGGACGAGGAGGACGGCAAACGCGAGCUAGAGCUGGAGGAGGAGGAGCUCGGGGGGGAGGAGGAGGACACGGGGGGCGAGGGCCUGGCUGACGACGACGAGGACGAGGAGAUCGAUUUGGAGA2000000006ACUUAGACGGCGCGGCCACCGAGCCUGAGCUGUCCCUGGCUGGGGCGGCGCGCAGGGAUGGCGACCUAGGCCUGGG2000000006ACCCAUUUCGG2000000006ACUCCAAAAAUAGCGACUCGGAAGAUAGCUCUGAGGGCUUAGAGGACCGGCCACUACCGGUCCUGAGUCUGGCUCCAGCGCCACCACCAGUGGCCGUGGCCUCGCCGUCUCUGCCGUCGCCCCCCGUGAGCCUGGACCCCUGCGCUCCCGCACCAGCCCCCGCCUCCGCCCUGCAGAAGCCCAAGAUCUGGUCCCUCGCGGAGACUGCCACAAGCCCGGACAACCCGCGCCGCUCGCCUCCCGGCGCGGGGGGGUCUCCACCGGGGGCAGCGGUCGCGCCUUCCGCCCUGCAGCUCUCUCCGGCCGCCGCCGCCGCCGCCGCUCACAG2000000006ACUGGUCUCAGCGCCGCUGGGCAAGUUCCCGGCUUGGACCAACCGGCCGUUUCCAGGCCCACCGCCCGGCCCCCGCCUGCACCCGCUCUCCCUGCUGGGCUCUGCCCCUCCGCACCUGCUGGGACUUCCCGGAGCCGCGGGCCACCCGGCUGCCGCCGCCGCCUUCGCUCGGCCAGCGGAGCCCGAAGGCGGAACAGAUCGCUGUAGUGCCUUGGAAGUGGAGAAAAAGUUACUCAAGACAGCUUUCCAGCCCGUGCCCAGGCGGCCCCAGAACCAUCUGGACGCCGCCCUGGUCUUAUCGGCUCUCUCCUCA2000000009UCCUAGUUCUUUAAAAAAAACAAAAAAACAAAAAAAACUUUUUUUAAUCGUUGUAAUAAUUGUAUAAAAAAAAUCGCUCUGUAUAGUUACAACUUGUAAGCAUGUCCGUGUAUAAAUACCUAAAAGCAAAACUAA2000000006ACAAAGAAAGUAAGAAAAAGAAAUAAAACCAGUCCUCCUCAGCCCUCCCCAAGUCGCUUCUGUGGCACCCCGCAUUCGCUGUGAGGUUUGUUUGUCCGGUUGAUUUUGGGGGGUGGAGUUUCAGUGAGAAUAAACGUGUCUGCCUUUGUGUGUGUGUAUAUAUACAGAGAAAUGUACAUAUGUGUGAACCAAAUUGUACGAGAAAGUAUCUAUUUUUGGCUAAAUAAAUGAGCUGCUGCCACUUUGACUAUAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1510	1586	1597	1925	2238	2373
Modification Positions	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	16:54285108:-	16:54285032:-	16:54285021:-	16:54284693:-	16:54283691:-	16:54283556:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 93arJtwJmuS9 Lny8GcCeVGc9 BtsJQJ3DteUq	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP Mk6ShCGm6RBJ JkWoGWVwjNda Yfn77uLS5tv8