Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000393306
Gene ID: ENSG00000140961
Gene Name: OSGIN1
Sequence (UNICHARACTER ENCODING) AGAGCCUCUUGGAUCCCCACAGGGUAAUGGGUGUCCCGAUCUCGCGGGGGACUCUGUGAUCCGUGUUCCCCUGACCCUCCUAGUGCACAACUUGGCCGGGCUCACUGGGCUCCUGCACCACUGCCUGUCAGGUCCGCUGCCAGCCCCAAGCCCCCCACCAGCCAUGAGCUCCUCCAGAAAGGACCACCUCGGCGCCAGCAGCUCAGAGCCCCUCCCGGUCAUCAUUGUGGGUAACGGCCCCUCUGGUAUCUGCCUGUCCUACCUGCUCUCCGGCUACACACCCUACACGAAGCCAGAUGCCAUCCACCCACACCCCCUGCUGCAGAGGAAGCUCACCGAGGCCCCGGGGGUCUCCAPCCUGGACCAGGACCUGGACUACCUGUCCGAAGGCCUCGAAGGCCGAUCCCAAAGCCCCGUGGCCCUGCUCUUUGAUGCCCUUCUACGCCCAGACACAGACUUUGGGGGAAACAUGAAGUCGGUCCUCACCUGGAAGCACCGGAAGGAGCACGCCAUCCCCCACGUGGUUCUGGGCCGGAACCUCCCCGGGGGAGCCUGGCACUCCAUCGAAGGCUCCAUGGUGAUCCUGAGCCAAGGCCAGUGGAUGGGGCUCCCGGACCUGGAGGUCAAGGACUGGAUGCAGAAGAAGCGAAGAGGUCUUCGCAACAGCCGGGCCACUGCCGGGGACAUCGCCCACUACUACAGGGACUACGUGGUCAAGAAGGGUCUGGGGCAUAЖCUUUGUGUCCGGUGCUGUAGUCACAGCCGUGGAGUGGGGGACCCCCGAUCCCAGCAGCUGUGGGGCCCAGGЖCUCCAGCCCCCUCUUCCAGGUGAGCGGCUUCCUGACCAGGAACCAGGCCCAGCAGCCCUUCUCGCUGUGGGCCCGCAACGUGGUCCUCGCCACAGGCACGUUCGACAGCCCGGCCCGGCUGGGCAUCCCCGGGGAGGCCCUGCCCUUCAPCCACCAUGAGCUGUCUGCCCUGGAGGCCGCCACAAGGGUGGGUGCGGUGACCCCGGCCUCAGЖCCCUGUCCUCAUCAUUGGCGCGGGGCUGUCAGCGGCCGACGCGGUCCUCUACGCCCGCCACUACAACAPCCCGGUGAUCCAUGCCUUCCGCCGGGCCGUGGACGACCCUGGCCUGGUGUUCAACCAGCUGCCCAAGAUGCUGUACCCCGAGUACCACAAGGUGCACCAGAUGAUGCGGGAGCAGUCCAUCCUGUCGCCCAGCCCCUAUGAGGGUUACCGCAGCCUCCCCAGGCACCAGCUGCUGUGCUUCAAGGAAGACUGCCAGGCCGUGUUCCAGGЖCCUCGAGGGUGUCGAGAAGGUGUUUGGGGUCUCCCUGGUGCUGGUCCUCAUCGGCUCCCACCCCGACCUCUCCUUCCUGCCUGGGGCAGGGGCUGЖCUUUGCAGUGGAUCCUGACCAGCCGCUGAGCGCCAAGAGGAACCCCAUUGACGUGGЖCCCCUUCACCUACCAGAGCACCCGCCAGGAGGGCCUGUACGCCAUGGGGCCGCUGGCCGGGGЖCAACUUCGUGAGGUUUGUGCAGGGGGGCGCCUUGGCUGUGGCCAGCUCCCUGCUAAGGAAGGAGЖCCAGGAAGCCACCCUAЖCACUCGGCCAGACCCGCUGGCUCCCAGGCCCUGAGAGGЖCAGAGAUGACCACAPCCCUGCUGGAUGCAGGACCCGUCCAAAGAUGCCCCGGGGAGGGGUGUCAGCCCACGUUGCUGGCCUUUGGGGUCAAGAGGAGUAGGGAUCCCAGGCUGCCCUGGЖCUUAGЖCCAGUGUCUGAGGUGGUAACAGCGGCCGCAGGCCAGGGUUGGCCUAGACCUGGGAUUUGUGGGGAAAGCUGCUGGUGUGACCAGCUGAGCACCCAGCCAGGAGЖCCUGCAGCCCUGCGCCUUCCAGAAGCAGGUCCCAAAUAAAGCCAGUGCCCACCUGC
Sequence (SHORT NAMES ENCODING) AGAGCCUCUUGGAUCCCCACAGGGUAAUGGGUGUCCCGAUCUCGCGGGGGACUCUGUGAUCCGUGUUCCCCUGACCCUCCUAGUGCACAACUUGGCCGGGCUCACUGGGCUCCUGCACCACUGCCUGUCAGGUCCGCUGCCAGCCCCAAGCCCCCCACCAGCCAUGAGCUCCUCCAGAAAGGACCACCUCGGCGCCAGCAGCUCAGAGCCCCUCCCGGUCAUCAUUGUGGGUAACGGCCCCUCUGGUAUCUGCCUGUCCUACCUGCUCUCCGGCUACACACCCUACACGAAGCCAGAUGCCAUCCACCCACACCCCCUGCUGCAGAGGAAGCUCACCGAGGCCCCGGGGGUCUCCAYCCUGGACCAGGACCUGGACUACCUGUCCGAAGGCCUCGAAGGCCGAUCCCAAAGCCCCGUGGCCCUGCUCUUUGAUGCCCUUCUACGCCCAGACACAGACUUUGGGGGAAACAUGAAGUCGGUCCUCACCUGGAAGCACCGGAAGGAGCACGCCAUCCCCCACGUGGUUCUGGGCCGGAACCUCCCCGGGGGAGCCUGGCACUCCAUCGAAGGCUCCAUGGUGAUCCUGAGCCAAGGCCAGUGGAUGGGGCUCCCGGACCUGGAGGUCAAGGACUGGAUGCAGAAGAAGCGAAGAGGUCUUCGCAACAGCCGGGCCACUGCCGGGGACAUCGCCCACUACUACAGGGACUACGUGGUCAAGAAGGGUCUGGGGCAUAm6ACUUUGUGUCCGGUGCUGUAGUCACAGCCGUGGAGUGGGGGACCCCCGAUCCCAGCAGCUGUGGGGCCCAGGm6ACUCCAGCCCCCUCUUCCAGGUGAGCGGCUUCCUGACCAGGAACCAGGCCCAGCAGCCCUUCUCGCUGUGGGCCCGCAACGUGGUCCUCGCCACAGGCACGUUCGACAGCCCGGCCCGGCUGGGCAUCCCCGGGGAGGCCCUGCCCUUCAYCCACCAUGAGCUGUCUGCCCUGGAGGCCGCCACAAGGGUGGGUGCGGUGACCCCGGCCUCAGm6ACCCUGUCCUCAUCAUUGGCGCGGGGCUGUCAGCGGCCGACGCGGUCCUCUACGCCCGCCACUACAACAYCCCGGUGAUCCAUGCCUUCCGCCGGGCCGUGGACGACCCUGGCCUGGUGUUCAACCAGCUGCCCAAGAUGCUGUACCCCGAGUACCACAAGGUGCACCAGAUGAUGCGGGAGCAGUCCAUCCUGUCGCCCAGCCCCUAUGAGGGUUACCGCAGCCUCCCCAGGCACCAGCUGCUGUGCUUCAAGGAAGACUGCCAGGCCGUGUUCCAGGm6ACCUCGAGGGUGUCGAGAAGGUGUUUGGGGUCUCCCUGGUGCUGGUCCUCAUCGGCUCCCACCCCGACCUCUCCUUCCUGCCUGGGGCAGGGGCUGm6ACUUUGCAGUGGAUCCUGACCAGCCGCUGAGCGCCAAGAGGAACCCCAUUGACGUGGm6ACCCCUUCACCUACCAGAGCACCCGCCAGGAGGGCCUGUACGCCAUGGGGCCGCUGGCCGGGGm6ACAACUUCGUGAGGUUUGUGCAGGGGGGCGCCUUGGCUGUGGCCAGCUCCCUGCUAAGGAAGGAGm6ACCAGGAAGCCACCCUAm6ACACUCGGCCAGACCCGCUGGCUCCCAGGCCCUGAGAGGm6ACAGAGAUGACCACAYCCCUGCUGGAUGCAGGACCCGUCCAAAGAUGCCCCGGGGAGGGGUGUCAGCCCACGUUGCUGGCCUUUGGGGUCAAGAGGAGUAGGGAUCCCAGGCUGCCCUGGm6ACUUAGm6ACCAGUGUCUGAGGUGGUAACAGCGGCCGCAGGCCAGGGUUGGCCUAGACCUGGGAUUUGUGGGGAAAGCUGCUGGUGUGACCAGCUGAGCACCCAGCCAGGAGm6ACCUGCAGCCCUGCGCCUUCCAGAAGCAGGUCCCAAAUAAAGCCAGUGCCCACCUGC
Sequence (MODOMICS CODE ENCODING) AGAGCCUCUUGGAUCCCCACAGGGUAAUGGGUGUCCCGAUCUCGCGGGGGACUCUGUGAUCCGUGUUCCCCUGACCCUCCUAGUGCACAACUUGGCCGGGCUCACUGGGCUCCUGCACCACUGCCUGUCAGGUCCGCUGCCAGCCCCAAGCCCCCCACCAGCCAUGAGCUCCUCCAGAAAGGACCACCUCGGCGCCAGCAGCUCAGAGCCCCUCCCGGUCAUCAUUGUGGGUAACGGCCCCUCUGGUAUCUGCCUGUCCUACCUGCUCUCCGGCUACACACCCUACACGAAGCCAGAUGCCAUCCACCCACACCCCCUGCUGCAGAGGAAGCUCACCGAGGCCCCGGGGGUCUCCA2000000009UCCUGGACCAGGACCUGGACUACCUGUCCGAAGGCCUCGAAGGCCGAUCCCAAAGCCCCGUGGCCCUGCUCUUUGAUGCCCUUCUACGCCCAGACACAGACUUUGGGGGAAACAUGAAGUCGGUCCUCACCUGGAAGCACCGGAAGGAGCACGCCAUCCCCCACGUGGUUCUGGGCCGGAACCUCCCCGGGGGAGCCUGGCACUCCAUCGAAGGCUCCAUGGUGAUCCUGAGCCAAGGCCAGUGGAUGGGGCUCCCGGACCUGGAGGUCAAGGACUGGAUGCAGAAGAAGCGAAGAGGUCUUCGCAACAGCCGGGCCACUGCCGGGGACAUCGCCCACUACUACAGGGACUACGUGGUCAAGAAGGGUCUGGGGCAUA2000000006ACUUUGUGUCCGGUGCUGUAGUCACAGCCGUGGAGUGGGGGACCCCCGAUCCCAGCAGCUGUGGGGCCCAGG2000000006ACUCCAGCCCCCUCUUCCAGGUGAGCGGCUUCCUGACCAGGAACCAGGCCCAGCAGCCCUUCUCGCUGUGGGCCCGCAACGUGGUCCUCGCCACAGGCACGUUCGACAGCCCGGCCCGGCUGGGCAUCCCCGGGGAGGCCCUGCCCUUCA2000000009UCCACCAUGAGCUGUCUGCCCUGGAGGCCGCCACAAGGGUGGGUGCGGUGACCCCGGCCUCAG2000000006ACCCUGUCCUCAUCAUUGGCGCGGGGCUGUCAGCGGCCGACGCGGUCCUCUACGCCCGCCACUACAACA2000000009UCCCGGUGAUCCAUGCCUUCCGCCGGGCCGUGGACGACCCUGGCCUGGUGUUCAACCAGCUGCCCAAGAUGCUGUACCCCGAGUACCACAAGGUGCACCAGAUGAUGCGGGAGCAGUCCAUCCUGUCGCCCAGCCCCUAUGAGGGUUACCGCAGCCUCCCCAGGCACCAGCUGCUGUGCUUCAAGGAAGACUGCCAGGCCGUGUUCCAGG2000000006ACCUCGAGGGUGUCGAGAAGGUGUUUGGGGUCUCCCUGGUGCUGGUCCUCAUCGGCUCCCACCCCGACCUCUCCUUCCUGCCUGGGGCAGGGGCUG2000000006ACUUUGCAGUGGAUCCUGACCAGCCGCUGAGCGCCAAGAGGAACCCCAUUGACGUGG2000000006ACCCCUUCACCUACCAGAGCACCCGCCAGGAGGGCCUGUACGCCAUGGGGCCGCUGGCCGGGG2000000006ACAACUUCGUGAGGUUUGUGCAGGGGGGCGCCUUGGCUGUGGCCAGCUCCCUGCUAAGGAAGGAG2000000006ACCAGGAAGCCACCCUA2000000006ACACUCGGCCAGACCCGCUGGCUCCCAGGCCCUGAGAGG2000000006ACAGAGAUGACCACA2000000009UCCCUGCUGGAUGCAGGACCCGUCCAAAGAUGCCCCGGGGAGGGGUGUCAGCCCACGUUGCUGGCCUUUGGGGUCAAGAGGAGUAGGGAUCCCAGGCUGCCCUGG2000000006ACUUAG2000000006ACCAGUGUCUGAGGUGGUAACAGCGGCCGCAGGCCAGGGUUGGCCUAGACCUGGGAUUUGUGGGGAAAGCUGCUGGUGUGACCAGCUGAGCACCCAGCCAGGAG2000000006ACCUGCAGCCCUGCGCCUUCCAGAAGCAGGUCCCAAAUAAAGCCAGUGCCCACCUGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 357 735 807 957 1020 1089 1299 1395 1452 1515 1580 1597 1636 1651 1756 1762 1866
Modification Positions Y m6A m6A Y m6A Y m6A m6A m6A m6A m6A m6A m6A Y m6A m6A m6A
Genomic Coordinates 16:83959386:+ 16:83965145:+ 16:83965217:+ 16:83965367:+ 16:83965430:+ 16:83965499:+ 16:83965709:+ 16:83965805:+ 16:83965862:+ 16:83965925:+ 16:83965990:+ 16:83966007:+ 16:83966046:+ 16:83966061:+ 16:83966166:+ 16:83966172:+ 16:83966276:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
WdHxkJGRmFxn
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
aJksAshEgQ8U
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
6UuHp6YApVKv
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
nfCHyrYzE6fB
Lny8GcCeVGc9
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
bXBqJigD9oV3
f6YSioLdAWpr
6UuHp6YApVKv
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
UN3tNpbCPHYf
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
aJksAshEgQ8U
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
3TeAZFYFxgvp
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
KRfQJWH4K5KH
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
UN3tNpbCPHYf
V5PvfiKsgFMd
nfCHyrYzE6fB
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr