General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000565832
Gene ID:	ENSG00000177200
Gene Name:	CHD9
Sequence (UNICHARACTER ENCODING)	AGCCAGAGGAAGUGAGGCUCAGACAGAGCAGCUGCUGUUCCAGCAACAGCAGCAACUGCCGCACCCUUGAAAGGAGGCCCCUGCCGUGUGGACCCGUAAAAUAAAAUGGGAUUUUGACACUUCAUGACAUGUCAUUAUUUAGAGCAAUAAUGAAUAUUGACCUGUUUUGGAUUAGUUGAUGACCUUCGGAAAUGAUCCAAUAAUAUCUACUAUAGAGAAGCUGAAUAUACUCCAUUUGGAGUGAACAGCCCGGAUUGUUACAGAAUUUUCAAGAUGACAGAUCCAAUGAUGGЖCUUUUUUGAUGAUGCCAAUCUUUUUGGUGAGACCUUAGAAGGUUUGUCAGAUGAUGCAUUUGUACAACCAGGЖCCUGUUUCACUAGUUGAUGAAUUGAAUUUGGGUGCAGAAUUUGAACCGUUGCACAUAGAUUCACUGAACCAUGUUCAAGGUACUCCAACACAUCAGAAGAUGACUGAUUUUGAЖCAGUUAAAUCAAUUUGAUUCAAUAAAAUUUCACCAUGUUAAUCAAUCUUUUGGUAGCCCAGCUGAACAUGUGUUAUCUCCACACUCUCAGUUUAAUUGUUCUCCAAUCCAUCCCCAAAACCAACCCAAUGGUUUGUUUCCAGAUGUAUCAGAUGGCAGUCCAAUGUGGGGCCAUCAGACAGCUACUACCAUUUCAAAUCAAAAUGGAUCUCCUUUUCACCAACAAGGЖCAUUCACACUCUAUGCAUCAAAAUAAAAGCUUUGUGGCACACCAUGACUUUGCCUUAUUUCAGGCCAAUGAACAACAAACACAGUGUACUUCACUACGCUCACAACAAAACAGAAAUAAUCUCAACCCAGGGCAGAAUUCUCUUAGCCAGUCUAAAAAUUUUAUGAAUGUUUCUGGUCCACAUAGAGUCAAUGUUAACCACCCACCACAGAUGACUAAUGCAUCUAAUUCACAACAGUCUAUUUCAAUGCAGCAAUUUUCUCAAACGUCAAAUCCUUCAGCACACUUCCACAAGUGUAGCAGUCAUCAAGAAGGAAAUUUUAAUGGЖCCUUCCCCAAAUAUGACUUCUUGUUCUGUCAGUAAUUCACAGCAAUUUUCUUCACAUUAUUCCUUUUCCAGUAAUCAUAUAUCACCAAACAGUCUACUUCAGUCCUCUGCAGUUCUUGCAUCUAAUCAUACAAAUCAGЖCUUUAUCUGAUUUUACUGGAAGUAAUUCCUUUUCACCUCAUAGAGGAAUCAAGCAAGAAUCUACUCAGCAUAUCCUAAACCCCAAUACAUCAUUGAAUUCAAAUAAUUUCCAAAUAUUGCAUUCAUCACAUCCUCAGGGUAAUUAUAGCAAUUCAAAAUUAUCUCCUGUGCACAUGAЖCUUCCCAGAUCCUGUUGACUCAGGAACUCAAAUGGGCCAUUUCAAUGAUCAUGUAGAAACUAAUGGCUUUUCAUCUUUAGAAGAGAAUUUACUUCAUCAAGUGGAAUCUCAAACUGAGCCAUUCACAGGЖCUUGACCCCGAGGACCUCCUUCAGGAGGGUCUUCUUCCUCACUUUGAUGAGUCAACAUUCGGЖCAAGAUAAUUCAAGUCACAUUUUAGAUCAUGACCUUGAUCGGCAGUUUACUUCGCAUCUGGUAACACGGCCUUCUGAUAUGGCUCAGЖCUCAGUUGCAAAGUCAGGCUCGGAGUUGGCAUUCAUCAUUUUCUAAUCAUCAGCAUUUACAUGACAGAAAUCACCUAUGUUUACAGCGACAGCCUCCAUCUUCCAAGAAGAGCGAUGGUUCUGGGACAUAUACUAAGUUGCAGAAUACCCAGGUGAGGGUCAUGUCUGAGAAGAAGCAGAGAAAAAAGGUGGAAUCAGAAAGCAAGCAAGAAAAGGCUAAUCGUAUAAUAUCAGAGGCCAUAGCAAAAGCAAAGGAGCGUGGGGAACGCAAUAUUCCACGAGUAAUGAGCCCUGAAAACUUUCCUACUGCUUCAGUUGAAGGAAAAGAGGAAAAGAAAGGUAGAAGGAUGAAAUCCAAGCCAAAGGACAAAGACAGCAAAAAAACAAAAACAUGUUCUAAGUUAAAAGAGAAGACAAAAAUUGGCAAACUCAUUAUUACAUUGGGUAAGAAACAAAAAAGAAAGAAUGAGUCUUCAGAUGAAAUAUCUGAUGCAGAACAGAUGCCACAGCAUACAUUAAAAGAUCAAGACUCUCAA
Sequence (SHORT NAMES ENCODING)	AGCCAGAGGAAGUGAGGCUCAGACAGAGCAGCUGCUGUUCCAGCAACAGCAGCAACUGCCGCACCCUUGAAAGGAGGCCCCUGCCGUGUGGACCCGUAAAAUAAAAUGGGAUUUUGACACUUCAUGACAUGUCAUUAUUUAGAGCAAUAAUGAAUAUUGACCUGUUUUGGAUUAGUUGAUGACCUUCGGAAAUGAUCCAAUAAUAUCUACUAUAGAGAAGCUGAAUAUACUCCAUUUGGAGUGAACAGCCCGGAUUGUUACAGAAUUUUCAAGAUGACAGAUCCAAUGAUGGm6ACUUUUUUGAUGAUGCCAAUCUUUUUGGUGAGACCUUAGAAGGUUUGUCAGAUGAUGCAUUUGUACAACCAGGm6ACCUGUUUCACUAGUUGAUGAAUUGAAUUUGGGUGCAGAAUUUGAACCGUUGCACAUAGAUUCACUGAACCAUGUUCAAGGUACUCCAACACAUCAGAAGAUGACUGAUUUUGAm6ACAGUUAAAUCAAUUUGAUUCAAUAAAAUUUCACCAUGUUAAUCAAUCUUUUGGUAGCCCAGCUGAACAUGUGUUAUCUCCACACUCUCAGUUUAAUUGUUCUCCAAUCCAUCCCCAAAACCAACCCAAUGGUUUGUUUCCAGAUGUAUCAGAUGGCAGUCCAAUGUGGGGCCAUCAGACAGCUACUACCAUUUCAAAUCAAAAUGGAUCUCCUUUUCACCAACAAGGm6ACAUUCACACUCUAUGCAUCAAAAUAAAAGCUUUGUGGCACACCAUGACUUUGCCUUAUUUCAGGCCAAUGAACAACAAACACAGUGUACUUCACUACGCUCACAACAAAACAGAAAUAAUCUCAACCCAGGGCAGAAUUCUCUUAGCCAGUCUAAAAAUUUUAUGAAUGUUUCUGGUCCACAUAGAGUCAAUGUUAACCACCCACCACAGAUGACUAAUGCAUCUAAUUCACAACAGUCUAUUUCAAUGCAGCAAUUUUCUCAAACGUCAAAUCCUUCAGCACACUUCCACAAGUGUAGCAGUCAUCAAGAAGGAAAUUUUAAUGGm6ACCUUCCCCAAAUAUGACUUCUUGUUCUGUCAGUAAUUCACAGCAAUUUUCUUCACAUUAUUCCUUUUCCAGUAAUCAUAUAUCACCAAACAGUCUACUUCAGUCCUCUGCAGUUCUUGCAUCUAAUCAUACAAAUCAGm6ACUUUAUCUGAUUUUACUGGAAGUAAUUCCUUUUCACCUCAUAGAGGAAUCAAGCAAGAAUCUACUCAGCAUAUCCUAAACCCCAAUACAUCAUUGAAUUCAAAUAAUUUCCAAAUAUUGCAUUCAUCACAUCCUCAGGGUAAUUAUAGCAAUUCAAAAUUAUCUCCUGUGCACAUGAm6ACUUCCCAGAUCCUGUUGACUCAGGAACUCAAAUGGGCCAUUUCAAUGAUCAUGUAGAAACUAAUGGCUUUUCAUCUUUAGAAGAGAAUUUACUUCAUCAAGUGGAAUCUCAAACUGAGCCAUUCACAGGm6ACUUGACCCCGAGGACCUCCUUCAGGAGGGUCUUCUUCCUCACUUUGAUGAGUCAACAUUCGGm6ACAAGAUAAUUCAAGUCACAUUUUAGAUCAUGACCUUGAUCGGCAGUUUACUUCGCAUCUGGUAACACGGCCUUCUGAUAUGGCUCAGm6ACUCAGUUGCAAAGUCAGGCUCGGAGUUGGCAUUCAUCAUUUUCUAAUCAUCAGCAUUUACAUGACAGAAAUCACCUAUGUUUACAGCGACAGCCUCCAUCUUCCAAGAAGAGCGAUGGUUCUGGGACAUAUACUAAGUUGCAGAAUACCCAGGUGAGGGUCAUGUCUGAGAAGAAGCAGAGAAAAAAGGUGGAAUCAGAAAGCAAGCAAGAAAAGGCUAAUCGUAUAAUAUCAGAGGCCAUAGCAAAAGCAAAGGAGCGUGGGGAACGCAAUAUUCCACGAGUAAUGAGCCCUGAAAACUUUCCUACUGCUUCAGUUGAAGGAAAAGAGGAAAAGAAAGGUAGAAGGAUGAAAUCCAAGCCAAAGGACAAAGACAGCAAAAAAACAAAAACAUGUUCUAAGUUAAAAGAGAAGACAAAAAUUGGCAAACUCAUUAUUACAUUGGGUAAGAAACAAAAAAGAAAGAAUGAGUCUUCAGAUGAAAUAUCUGAUGCAGAACAGAUGCCACAGCAUACAUUAAAAGAUCAAGACUCUCAA
Sequence (MODOMICS CODE ENCODING)	AGCCAGAGGAAGUGAGGCUCAGACAGAGCAGCUGCUGUUCCAGCAACAGCAGCAACUGCCGCACCCUUGAAAGGAGGCCCCUGCCGUGUGGACCCGUAAAAUAAAAUGGGAUUUUGACACUUCAUGACAUGUCAUUAUUUAGAGCAAUAAUGAAUAUUGACCUGUUUUGGAUUAGUUGAUGACCUUCGGAAAUGAUCCAAUAAUAUCUACUAUAGAGAAGCUGAAUAUACUCCAUUUGGAGUGAACAGCCCGGAUUGUUACAGAAUUUUCAAGAUGACAGAUCCAAUGAUGG2000000006ACUUUUUUGAUGAUGCCAAUCUUUUUGGUGAGACCUUAGAAGGUUUGUCAGAUGAUGCAUUUGUACAACCAGG2000000006ACCUGUUUCACUAGUUGAUGAAUUGAAUUUGGGUGCAGAAUUUGAACCGUUGCACAUAGAUUCACUGAACCAUGUUCAAGGUACUCCAACACAUCAGAAGAUGACUGAUUUUGA2000000006ACAGUUAAAUCAAUUUGAUUCAAUAAAAUUUCACCAUGUUAAUCAAUCUUUUGGUAGCCCAGCUGAACAUGUGUUAUCUCCACACUCUCAGUUUAAUUGUUCUCCAAUCCAUCCCCAAAACCAACCCAAUGGUUUGUUUCCAGAUGUAUCAGAUGGCAGUCCAAUGUGGGGCCAUCAGACAGCUACUACCAUUUCAAAUCAAAAUGGAUCUCCUUUUCACCAACAAGG2000000006ACAUUCACACUCUAUGCAUCAAAAUAAAAGCUUUGUGGCACACCAUGACUUUGCCUUAUUUCAGGCCAAUGAACAACAAACACAGUGUACUUCACUACGCUCACAACAAAACAGAAAUAAUCUCAACCCAGGGCAGAAUUCUCUUAGCCAGUCUAAAAAUUUUAUGAAUGUUUCUGGUCCACAUAGAGUCAAUGUUAACCACCCACCACAGAUGACUAAUGCAUCUAAUUCACAACAGUCUAUUUCAAUGCAGCAAUUUUCUCAAACGUCAAAUCCUUCAGCACACUUCCACAAGUGUAGCAGUCAUCAAGAAGGAAAUUUUAAUGG2000000006ACCUUCCCCAAAUAUGACUUCUUGUUCUGUCAGUAAUUCACAGCAAUUUUCUUCACAUUAUUCCUUUUCCAGUAAUCAUAUAUCACCAAACAGUCUACUUCAGUCCUCUGCAGUUCUUGCAUCUAAUCAUACAAAUCAG2000000006ACUUUAUCUGAUUUUACUGGAAGUAAUUCCUUUUCACCUCAUAGAGGAAUCAAGCAAGAAUCUACUCAGCAUAUCCUAAACCCCAAUACAUCAUUGAAUUCAAAUAAUUUCCAAAUAUUGCAUUCAUCACAUCCUCAGGGUAAUUAUAGCAAUUCAAAAUUAUCUCCUGUGCACAUGA2000000006ACUUCCCAGAUCCUGUUGACUCAGGAACUCAAAUGGGCCAUUUCAAUGAUCAUGUAGAAACUAAUGGCUUUUCAUCUUUAGAAGAGAAUUUACUUCAUCAAGUGGAAUCUCAAACUGAGCCAUUCACAGG2000000006ACUUGACCCCGAGGACCUCCUUCAGGAGGGUCUUCUUCCUCACUUUGAUGAGUCAACAUUCGG2000000006ACAAGAUAAUUCAAGUCACAUUUUAGAUCAUGACCUUGAUCGGCAGUUUACUUCGCAUCUGGUAACACGGCCUUCUGAUAUGGCUCAG2000000006ACUCAGUUGCAAAGUCAGGCUCGGAGUUGGCAUUCAUCAUUUUCUAAUCAUCAGCAUUUACAUGACAGAAAUCACCUAUGUUUACAGCGACAGCCUCCAUCUUCCAAGAAGAGCGAUGGUUCUGGGACAUAUACUAAGUUGCAGAAUACCCAGGUGAGGGUCAUGUCUGAGAAGAAGCAGAGAAAAAAGGUGGAAUCAGAAAGCAAGCAAGAAAAGGCUAAUCGUAUAAUAUCAGAGGCCAUAGCAAAAGCAAAGGAGCGUGGGGAACGCAAUAUUCCACGAGUAAUGAGCCCUGAAAACUUUCCUACUGCUUCAGUUGAAGGAAAAGAGGAAAAGAAAGGUAGAAGGAUGAAAUCCAAGCCAAAGGACAAAGACAGCAAAAAAACAAAAACAUGUUCUAAGUUAAAAGAGAAGACAAAAAUUGGCAAACUCAUUAUUACAUUGGGUAAGAAACAAAAAAGAAAGAAUGAGUCUUCAGAUGAAAUAUCUGAUGCAGAACAGAUGCCACAGCAUACAUUAAAAGAUCAAGACUCUCAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	293	366	480	708	1035	1174	1352	1482	1545	1633
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	16:53156109:+	16:53156182:+	16:53156296:+	16:53156524:+	16:53156851:+	16:53156990:+	16:53157168:+	16:53157298:+	16:53157361:+	16:53157449:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	msuJfBpJvM5H VyCX26p5UBRL ArijeGVTwYBw Lny8GcCeVGc9 UKen6WEino9G	jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se Lny8GcCeVGc9 UKen6WEino9G	8cMbzB4aD5Se BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G	5FhTyQVy2tKW 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML	6UuHp6YApVKv gBgcfFQ5WN9C jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL BsCW7emuRX7M KENzb7mwdBd9 Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML