General Data

RNA Type	lncRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000562298
Gene ID:	ENSG00000261373
Gene Name:	VPS9D1-AS1
Sequence (UNICHARACTER ENCODING)	AGCUUUCCUCCUUCAUCGGAGUAUACACGGCGGUGUCGGCCGGCAGGCUGGGGAAUGGGAGCAGCUGCAGGCAUGGUUGGCUUCAGGCGUGUUUUCCCUGCAAGCCAUGGGCCUCUGGGAAGUGGCCGUUUUACAGAGACAAGGACGUGCUGAGGGGAUCGCCUCACCCAUCUCCCACCGGCUGUGUCCCCAAAGUCCUGCCUUCCCGUAGCUUGGCAUGGAGCACCUCUGCGCGACCAUGGЖCCUGCUCACACAGCCCUUCUGCGCGCCGUGGGAGCUGCCUCUCUGUGACUCGCCCCUGGACCCACCGCCCCAGCGCCUGACCCACCUCCCUGCUGCCCUUCACAGAAAЖCUUCUCAUAGЖCUCCCAUUUUCUCAPCCCGCCCCGAUUUAGCCCCCGACUCCCCCCGGAAЖCUGCCCUUACCCGUCCCCACCUUGCCAGACACGGUGGGCCACUGGAGUUCCUCUGUCUUCUGGGЖCUUUGCUCUCCCCAGGGGAUCCUCUGCCACUCCUCCACCCAACUCCUCAAUCUUGGAGCGCCAGAGCUCAGCCGAGCUCACCGGCUCCCUAGGGAGCUGGGGCAACUGUUAGCUCCCCCUGACCUGUGUGAUCCUACGUCCAGUGGCUGCCCCGACCUCUGUGAUCCCACGUCCAGGGGCUCCCCCGACCUCUGUGAUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGGUCCCCCUGACCUCUGUGAUCCCACGUCCAGUGGCUCCCCCUGACCUCUGUGCUCUAUGUCCAGUGGCUCCCCCUGACCUCUGUGAUCCUUUGUGCAGCGGCUGCUGGCCUCUCAAЖCUUAAUGUGUUCAUUGCGGAЖCUUG
Sequence (SHORT NAMES ENCODING)	AGCUUUCCUCCUUCAUCGGAGUAUACACGGCGGUGUCGGCCGGCAGGCUGGGGAAUGGGAGCAGCUGCAGGCAUGGUUGGCUUCAGGCGUGUUUUCCCUGCAAGCCAUGGGCCUCUGGGAAGUGGCCGUUUUACAGAGACAAGGACGUGCUGAGGGGAUCGCCUCACCCAUCUCCCACCGGCUGUGUCCCCAAAGUCCUGCCUUCCCGUAGCUUGGCAUGGAGCACCUCUGCGCGACCAUGGm6ACCUGCUCACACAGCCCUUCUGCGCGCCGUGGGAGCUGCCUCUCUGUGACUCGCCCCUGGACCCACCGCCCCAGCGCCUGACCCACCUCCCUGCUGCCCUUCACAGAAAm6ACUUCUCAUAGm6ACUCCCAUUUUCUCAYCCCGCCCCGAUUUAGCCCCCGACUCCCCCCGGAAm6ACUGCCCUUACCCGUCCCCACCUUGCCAGACACGGUGGGCCACUGGAGUUCCUCUGUCUUCUGGGm6ACUUUGCUCUCCCCAGGGGAUCCUCUGCCACUCCUCCACCCAACUCCUCAAUCUUGGAGCGCCAGAGCUCAGCCGAGCUCACCGGCUCCCUAGGGAGCUGGGGCAACUGUUAGCUCCCCCUGACCUGUGUGAUCCUACGUCCAGUGGCUGCCCCGACCUCUGUGAUCCCACGUCCAGGGGCUCCCCCGACCUCUGUGAUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGGUCCCCCUGACCUCUGUGAUCCCACGUCCAGUGGCUCCCCCUGACCUCUGUGCUCUAUGUCCAGUGGCUCCCCCUGACCUCUGUGAUCCUUUGUGCAGCGGCUGCUGGCCUCUCAAm6ACUUAAUGUGUUCAUUGCGGAm6ACUUG
Sequence (MODOMICS CODE ENCODING)	AGCUUUCCUCCUUCAUCGGAGUAUACACGGCGGUGUCGGCCGGCAGGCUGGGGAAUGGGAGCAGCUGCAGGCAUGGUUGGCUUCAGGCGUGUUUUCCCUGCAAGCCAUGGGCCUCUGGGAAGUGGCCGUUUUACAGAGACAAGGACGUGCUGAGGGGAUCGCCUCACCCAUCUCCCACCGGCUGUGUCCCCAAAGUCCUGCCUUCCCGUAGCUUGGCAUGGAGCACCUCUGCGCGACCAUGG2000000006ACCUGCUCACACAGCCCUUCUGCGCGCCGUGGGAGCUGCCUCUCUGUGACUCGCCCCUGGACCCACCGCCCCAGCGCCUGACCCACCUCCCUGCUGCCCUUCACAGAAA2000000006ACUUCUCAUAG2000000006ACUCCCAUUUUCUCA2000000009UCCCGCCCCGAUUUAGCCCCCGACUCCCCCCGGAA2000000006ACUGCCCUUACCCGUCCCCACCUUGCCAGACACGGUGGGCCACUGGAGUUCCUCUGUCUUCUGGG2000000006ACUUUGCUCUCCCCAGGGGAUCCUCUGCCACUCCUCCACCCAACUCCUCAAUCUUGGAGCGCCAGAGCUCAGCCGAGCUCACCGGCUCCCUAGGGAGCUGGGGCAACUGUUAGCUCCCCCUGACCUGUGUGAUCCUACGUCCAGUGGCUGCCCCGACCUCUGUGAUCCCACGUCCAGGGGCUCCCCCGACCUCUGUGAUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGCUCCCCCGACCUCUGUGCUCCCACGUCCAGUGGGUCCCCCUGACCUCUGUGAUCCCACGUCCAGUGGCUCCCCCUGACCUCUGUGCUCUAUGUCCAGUGGCUCCCCCUGACCUCUGUGAUCCUUUGUGCAGCGGCUGCUGGCCUCUCAA2000000006ACUUAAUGUGUUCAUUGCGGA2000000006ACUUG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	243	352	363	378	413	478	906	927
Modification Positions	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A
Genomic Coordinates	16:89717476:+	16:89717585:+	16:89717596:+	16:89717611:+	16:89717646:+	16:89717711:+	16:89718139:+	16:89718160:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BkoLW2CBToyL UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G BtsJQJ3DteUq JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8