General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000503629
Gene ID:	ENSG00000103496
Gene Name:	STX4
Sequence (UNICHARACTER ENCODING)	AGUCAUGCUACAGCCAAUGCCCUUUUGCAGCUGAGACUUACAGGAAAGAGAUCUCAUUCAGUAGGAGUACUGAGACCUGAGGCUGGUGGUGCCAGGAGGAGGCAGGGAUAGGGAGGGCUUUGCAGCAGCUGUAGAUAGGCCUGGAAGAAUGGGUAAAUUCAGACAGAUUUGUGAAGGCACAGUUCACCAUCUGUGAAAGGGGGAGAUGAUCAAUCGGAUUGAGAAGAACAPCCUGAGCUCAGCGGACUACGUGGAACGUGGGCAGGAGCACGUCAAGACGGCCCUGGAGAACCAGAAGAAGGCGAGGAAGAAGAAAGUCUUGAUUGCCAUCUGUGUGUCCAUCACCGUCGUCCPCCUAGCAGUCAUCAUUGGCGUCACAGUGGUUGGAUAAUGUCGCACAUUGUUGUAGAGACGGGGUUUCAUCGUGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCAGCUUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACCGCGCCCGGCCCCCGACACCUAGUUUUAAAGGGCCCCUGCUGUUGCUGCCGCUGCCGCCGCUCCCAGCUGCCCAGUCUGGCGGGCUCAGUCCCGCGUUGCCAUGUGUGGGAGACCGCGUCGCGUAAGCGCUGGAUGUGGCUUCGCUGAUGCACAUUGGACCGGGCUCUGGЖCUGGGCUAGGGGAAGGGCAGGAGGGCGGAAUUGGGCCCGAGGGCCAGGCCUCGCCGACCCCCGACUGCGCCUCCCGGUGGCCCCGCAGCGCCUCCCGGUGGCCCUGGAGUGCAGGUCUUACCGUCCGAGAUCGUCCGCAACUGGGCGAGCUGUGCAUGGGGCGUGGCUAAGGCCGUGGUUUGGUUACGAUUGGCCAGCGGGЖCUUAAGUGUUGUCUCUGAAGAGCAUGGЖCAUUAGUCUGGAGGGUCCUGGAAGAGUGAUCCCCGCCCCACCAUCAAAUGGCGCUUAGGUCUAGGAAGCGGGUGUGGGUGGGGCCUUAGGGCGAGGCGCAGACAUACCCCGAAGUGGUUGGЖUUGUAUACCGCAAGGGGCUGGAUCGAACCCCCCAAAGЖCACUGGAAGGCUGUGUGGCUGAGGAGGGCCCGGCAGAUCCAGUGUGUCGUGGGCUUUACAGGAAAGAGCUCCACCUUCUCUGGAGUGUGCAGAUGCGAUCUAGGUGUGUCCACCCGAUGGGAGCUGCGGGCCGGGCAGAUGCUGCCCCAGUACAAAGCUGAUUUGGЖCCUGGGGCCUCUGGЖCUUCCCUGAUUCUCUGCUUGCAUCUCCAGCAAAGUCCUGUCCCGUUGGCUGCCUUCAUCCACUCUCUCACUUCUCUGCCUUCAGAGUAAAAUUGCAAGAUCUGUGGUGCUUACUGGGAUCUGA
Sequence (SHORT NAMES ENCODING)	AGUCAUGCUACAGCCAAUGCCCUUUUGCAGCUGAGACUUACAGGAAAGAGAUCUCAUUCAGUAGGAGUACUGAGACCUGAGGCUGGUGGUGCCAGGAGGAGGCAGGGAUAGGGAGGGCUUUGCAGCAGCUGUAGAUAGGCCUGGAAGAAUGGGUAAAUUCAGACAGAUUUGUGAAGGCACAGUUCACCAUCUGUGAAAGGGGGAGAUGAUCAAUCGGAUUGAGAAGAACAYCCUGAGCUCAGCGGACUACGUGGAACGUGGGCAGGAGCACGUCAAGACGGCCCUGGAGAACCAGAAGAAGGCGAGGAAGAAGAAAGUCUUGAUUGCCAUCUGUGUGUCCAUCACCGUCGUCCYCCUAGCAGUCAUCAUUGGCGUCACAGUGGUUGGAUAAUGUCGCACAUUGUUGUAGAGACGGGGUUUCAUCGUGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCAGCUUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACCGCGCCCGGCCCCCGACACCUAGUUUUAAAGGGCCCCUGCUGUUGCUGCCGCUGCCGCCGCUCCCAGCUGCCCAGUCUGGCGGGCUCAGUCCCGCGUUGCCAUGUGUGGGAGACCGCGUCGCGUAAGCGCUGGAUGUGGCUUCGCUGAUGCACAUUGGACCGGGCUCUGGm6ACUGGGCUAGGGGAAGGGCAGGAGGGCGGAAUUGGGCCCGAGGGCCAGGCCUCGCCGACCCCCGACUGCGCCUCCCGGUGGCCCCGCAGCGCCUCCCGGUGGCCCUGGAGUGCAGGUCUUACCGUCCGAGAUCGUCCGCAACUGGGCGAGCUGUGCAUGGGGCGUGGCUAAGGCCGUGGUUUGGUUACGAUUGGCCAGCGGGm6ACUUAAGUGUUGUCUCUGAAGAGCAUGGm6ACAUUAGUCUGGAGGGUCCUGGAAGAGUGAUCCCCGCCCCACCAUCAAAUGGCGCUUAGGUCUAGGAAGCGGGUGUGGGUGGGGCCUUAGGGCGAGGCGCAGACAUACCCCGAAGUGGUUGGm6AUUGUAUACCGCAAGGGGCUGGAUCGAACCCCCCAAAGm6ACACUGGAAGGCUGUGUGGCUGAGGAGGGCCCGGCAGAUCCAGUGUGUCGUGGGCUUUACAGGAAAGAGCUCCACCUUCUCUGGAGUGUGCAGAUGCGAUCUAGGUGUGUCCACCCGAUGGGAGCUGCGGGCCGGGCAGAUGCUGCCCCAGUACAAAGCUGAUUUGGm6ACCUGGGGCCUCUGGm6ACUUCCCUGAUUCUCUGCUUGCAUCUCCAGCAAAGUCCUGUCCCGUUGGCUGCCUUCAUCCACUCUCUCACUUCUCUGCCUUCAGAGUAAAAUUGCAAGAUCUGUGGUGCUUACUGGGAUCUGA
Sequence (MODOMICS CODE ENCODING)	AGUCAUGCUACAGCCAAUGCCCUUUUGCAGCUGAGACUUACAGGAAAGAGAUCUCAUUCAGUAGGAGUACUGAGACCUGAGGCUGGUGGUGCCAGGAGGAGGCAGGGAUAGGGAGGGCUUUGCAGCAGCUGUAGAUAGGCCUGGAAGAAUGGGUAAAUUCAGACAGAUUUGUGAAGGCACAGUUCACCAUCUGUGAAAGGGGGAGAUGAUCAAUCGGAUUGAGAAGAACA2000000009UCCUGAGCUCAGCGGACUACGUGGAACGUGGGCAGGAGCACGUCAAGACGGCCCUGGAGAACCAGAAGAAGGCGAGGAAGAAGAAAGUCUUGAUUGCCAUCUGUGUGUCCAUCACCGUCGUCC2000000009UCCUAGCAGUCAUCAUUGGCGUCACAGUGGUUGGAUAAUGUCGCACAUUGUUGUAGAGACGGGGUUUCAUCGUGUUAGCCAGGAUGGUCUCGAUCUCCUGACCUCGUGAUCCGCCCGCCUCAGCUUCCCAAAGUGCUGGGAUUACAGGCAUGAGCCACCGCGCCCGGCCCCCGACACCUAGUUUUAAAGGGCCCCUGCUGUUGCUGCCGCUGCCGCCGCUCCCAGCUGCCCAGUCUGGCGGGCUCAGUCCCGCGUUGCCAUGUGUGGGAGACCGCGUCGCGUAAGCGCUGGAUGUGGCUUCGCUGAUGCACAUUGGACCGGGCUCUGG2000000006ACUGGGCUAGGGGAAGGGCAGGAGGGCGGAAUUGGGCCCGAGGGCCAGGCCUCGCCGACCCCCGACUGCGCCUCCCGGUGGCCCCGCAGCGCCUCCCGGUGGCCCUGGAGUGCAGGUCUUACCGUCCGAGAUCGUCCGCAACUGGGCGAGCUGUGCAUGGGGCGUGGCUAAGGCCGUGGUUUGGUUACGAUUGGCCAGCGGG2000000006ACUUAAGUGUUGUCUCUGAAGAGCAUGG2000000006ACAUUAGUCUGGAGGGUCCUGGAAGAGUGAUCCCCGCCCCACCAUCAAAUGGCGCUUAGGUCUAGGAAGCGGGUGUGGGUGGGGCCUUAGGGCGAGGCGCAGACAUACCCCGAAGUGGUUGG2000000006AUUGUAUACCGCAAGGGGCUGGAUCGAACCCCCCAAAG2000000006ACACUGGAAGGCUGUGUGGCUGAGGAGGGCCCGGCAGAUCCAGUGUGUCGUGGGCUUUACAGGAAAGAGCUCCACCUUCUCUGGAGUGUGCAGAUGCGAUCUAGGUGUGUCCACCCGAUGGGAGCUGCGGGCCGGGCAGAUGCUGCCCCAGUACAAAGCUGAUUUGG2000000006ACCUGGGGCCUCUGG2000000006ACUUCCCUGAUUCUCUGCUUGCAUCUCCAGCAAAGUCCUGUCCCGUUGGCUGCCUUCAUCCACUCUCUCACUUCUCUGCCUUCAGAGUAAAAUUGCAAGAUCUGUGGUGCUUACUGGGAUCUGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	231	354	682	884	912	1034	1072	1239	1254
Modification Positions	Y	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	16:31039572:+	16:31039766:+	16:31042280:+	16:31042482:+	16:31042510:+	16:31042632:+	16:31042670:+	16:31042837:+	16:31042852:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	gBgcfFQ5WN9C msuJfBpJvM5H VyCX26p5UBRL	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	msuJfBpJvM5H VyCX26p5UBRL	msuJfBpJvM5H VyCX26p5UBRL WdHxkJGRmFxn	gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT	3TeAZFYFxgvp aHkqKEJkRYyb Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn WiQcrNTGZHPT