Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000427443
Gene ID: ENSG00000103037
Gene Name: SETD6
Sequence (UNICHARACTER ENCODING) CCGCGCGGUGCGCCGGCCCGCGAGGAAACGCGCUCUUAGACCAUGGCGACCCAGGCGAAGCGUCCACGGGUGGCGGGGCCCGUGGACGGCGGCGACCUGGAUCCUGUGGCCUGCUUCCUGAGCUGGUGCCGGCGGGUGGGGCUGGAGCUGAGUCCCAAGGUGGCGGUCAGCCGGCAGGGCACGGUGGCCGGCUACGGCAUGGUGGCCCGGGAGAGCGUGCAGGCCGGAGAGCUGUUGUUCGUGGUGCCGCGGGCCGCGCUCCUGUCGCAGCACACCUGCUCCAUCGGCGGCCUGCUGGAGCGAGAGCGAGUUGCGCUGCAGAGCCAGUCGGGCUGGGUGCCACUGCUGCUGGCGCUGCUCCACGAGCUGCAGGCCCCGGCCUCACGCUGGAGGCCCUACUUUGCGCUCUGGCCCGAGCUGGGCCGCUUGGAGCACCCGAUGUUCUGGCCAGAGGAGGAGCGCCGGUGCCUGCUCCAGGGCACAGGCGUACCUGAGGCCGUGGAGAAGGAUUUGGCCAACAPCCGCAGCGAGUACCAGUCCAUCGUGCUGCCCUUCAUGGAAGCCCACCCCGAUCUCUUCAGCCUCAGGGUUCGCUCCCUAGAACUCUACCACCAGCUGGUGGCCCUUGUGAUGGCCUAUAGCUUUCAGGAACCACUGGAGGAAGAAGAGGAUGAAAAGGAGCCCAACUCCCCCGUGAUGGUGCCUGCUGCAGACAUACUAAACCACUUAGCCAAUCACAACGCCAAUCUAGAAUACUCUGCGGCAUGGCCCCAGCUUCUCCCUUUCACCUCAGAAUUGUCUUCGGAUGGUAGCCACUCAGCCCAUUCCUAAAGGCCAUGAGAUUUUCAACACUUAUGGGCAAAUGGCUAЖCUGGCAACUGAUUCAUAUGUACGGUUUUGUUGAACCAUAUCCUGACAACACAGAUGACACAGCUGACAUUCAGAUGGUGACAGUUCGUGAGGCAGCAUUACAGGGAACAAAAACUGAAGCUGAAAGGCACCUAGUGUACGAGCGCUGGGAUUUCCUAUGCAAACUGGAGAUGGUAGGGGAAGAGGGAGCCUUUGUGAUAGGGAGGGAGGAGGUGCUGACUGAAGAGGAGCUGACCACCACACUAAAGGUACUGUGCAUGCCUGCUGAGGAGUUCAGAGAGCUUAAAGACCAGGAUGGAGGGGGAGAUGAUAAAAGGGAAGAGGGCAGCCUGACGAUCACAAAUAUUCCCAAGCUCAAAGCAUCGUGGAGACAGCUGCUUCAAAACAGUGUUCUACUGЖCUUUGCAGACCUAUGCCACAGЖCUUAAAAЖCUGACCAAGGUUUACUCAGUAAUAAGGAAGUCUAUGCGAAACUCAGCUGGAGGGAЖCAGCAAGCCUUACAGGUUCGCUAUGGUCAGAAGAUGAUCUUACAUCAGUUGUUGGAGCUGACAAGUUAGCAGUUUCCCUGUUCCCUGЖAGGAACAGCAAUAAGAЖCUPUAUUCUAAGCUAAUACUCAUUGAUGUUUGAAAAAGAGGAAAAUUUGGAUCUUUCUUUUGCUUACUAAЖCACCAAGAGGAAAAGUAGCAAAGUUGGUGUGCUAGGAUUAЖCUCAGGUAAGGGUGAUGUGUUUUAGGAUUGAGAЖCAGCAGACUUGGGAAUCACUGCUAAUUGUUACUUAAAGCAUGUUACAGAUGUUUUGUUCUCAGUUUUAACCAAAGCCAGUGGACAUACGGUAGUAAUAAGUAAGUCUUGUUGUGUUUCAGCAUUUAAUAAUAGACUUUGGAGGUAGЖCCCCUGGUUUAAAUCUAAGUCUAGUUUGAGGAAGUCACUUAACCUPUAUUGAAAAGЖCUCUGGAUUUAAUAAGCUGUGUAACUGGUACUCGAUAGUUACCCAAAGUUCAGUCUAGAUGGCACAAACCACCUCUCAGGGAAUAAACCCUAAGACAUCA
Sequence (SHORT NAMES ENCODING) CCGCGCGGUGCGCCGGCCCGCGAGGAAACGCGCUCUUAGACCAUGGCGACCCAGGCGAAGCGUCCACGGGUGGCGGGGCCCGUGGACGGCGGCGACCUGGAUCCUGUGGCCUGCUUCCUGAGCUGGUGCCGGCGGGUGGGGCUGGAGCUGAGUCCCAAGGUGGCGGUCAGCCGGCAGGGCACGGUGGCCGGCUACGGCAUGGUGGCCCGGGAGAGCGUGCAGGCCGGAGAGCUGUUGUUCGUGGUGCCGCGGGCCGCGCUCCUGUCGCAGCACACCUGCUCCAUCGGCGGCCUGCUGGAGCGAGAGCGAGUUGCGCUGCAGAGCCAGUCGGGCUGGGUGCCACUGCUGCUGGCGCUGCUCCACGAGCUGCAGGCCCCGGCCUCACGCUGGAGGCCCUACUUUGCGCUCUGGCCCGAGCUGGGCCGCUUGGAGCACCCGAUGUUCUGGCCAGAGGAGGAGCGCCGGUGCCUGCUCCAGGGCACAGGCGUACCUGAGGCCGUGGAGAAGGAUUUGGCCAACAYCCGCAGCGAGUACCAGUCCAUCGUGCUGCCCUUCAUGGAAGCCCACCCCGAUCUCUUCAGCCUCAGGGUUCGCUCCCUAGAACUCUACCACCAGCUGGUGGCCCUUGUGAUGGCCUAUAGCUUUCAGGAACCACUGGAGGAAGAAGAGGAUGAAAAGGAGCCCAACUCCCCCGUGAUGGUGCCUGCUGCAGACAUACUAAACCACUUAGCCAAUCACAACGCCAAUCUAGAAUACUCUGCGGCAUGGCCCCAGCUUCUCCCUUUCACCUCAGAAUUGUCUUCGGAUGGUAGCCACUCAGCCCAUUCCUAAAGGCCAUGAGAUUUUCAACACUUAUGGGCAAAUGGCUAm6ACUGGCAACUGAUUCAUAUGUACGGUUUUGUUGAACCAUAUCCUGACAACACAGAUGACACAGCUGACAUUCAGAUGGUGACAGUUCGUGAGGCAGCAUUACAGGGAACAAAAACUGAAGCUGAAAGGCACCUAGUGUACGAGCGCUGGGAUUUCCUAUGCAAACUGGAGAUGGUAGGGGAAGAGGGAGCCUUUGUGAUAGGGAGGGAGGAGGUGCUGACUGAAGAGGAGCUGACCACCACACUAAAGGUACUGUGCAUGCCUGCUGAGGAGUUCAGAGAGCUUAAAGACCAGGAUGGAGGGGGAGAUGAUAAAAGGGAAGAGGGCAGCCUGACGAUCACAAAUAUUCCCAAGCUCAAAGCAUCGUGGAGACAGCUGCUUCAAAACAGUGUUCUACUGm6ACUUUGCAGACCUAUGCCACAGm6ACUUAAAAm6ACUGACCAAGGUUUACUCAGUAAUAAGGAAGUCUAUGCGAAACUCAGCUGGAGGGAm6ACAGCAAGCCUUACAGGUUCGCUAUGGUCAGAAGAUGAUCUUACAUCAGUUGUUGGAGCUGACAAGUUAGCAGUUUCCCUGUUCCCUGm6AAGGAACAGCAAUAAGAm6ACUYUAUUCUAAGCUAAUACUCAUUGAUGUUUGAAAAAGAGGAAAAUUUGGAUCUUUCUUUUGCUUACUAAm6ACACCAAGAGGAAAAGUAGCAAAGUUGGUGUGCUAGGAUUAm6ACUCAGGUAAGGGUGAUGUGUUUUAGGAUUGAGAm6ACAGCAGACUUGGGAAUCACUGCUAAUUGUUACUUAAAGCAUGUUACAGAUGUUUUGUUCUCAGUUUUAACCAAAGCCAGUGGACAUACGGUAGUAAUAAGUAAGUCUUGUUGUGUUUCAGCAUUUAAUAAUAGACUUUGGAGGUAGm6ACCCCUGGUUUAAAUCUAAGUCUAGUUUGAGGAAGUCACUUAACCUYUAUUGAAAAGm6ACUCUGGAUUUAAUAAGCUGUGUAACUGGUACUCGAUAGUUACCCAAAGUUCAGUCUAGAUGGCACAAACCACCUCUCAGGGAAUAAACCCUAAGACAUCA
Sequence (MODOMICS CODE ENCODING) CCGCGCGGUGCGCCGGCCCGCGAGGAAACGCGCUCUUAGACCAUGGCGACCCAGGCGAAGCGUCCACGGGUGGCGGGGCCCGUGGACGGCGGCGACCUGGAUCCUGUGGCCUGCUUCCUGAGCUGGUGCCGGCGGGUGGGGCUGGAGCUGAGUCCCAAGGUGGCGGUCAGCCGGCAGGGCACGGUGGCCGGCUACGGCAUGGUGGCCCGGGAGAGCGUGCAGGCCGGAGAGCUGUUGUUCGUGGUGCCGCGGGCCGCGCUCCUGUCGCAGCACACCUGCUCCAUCGGCGGCCUGCUGGAGCGAGAGCGAGUUGCGCUGCAGAGCCAGUCGGGCUGGGUGCCACUGCUGCUGGCGCUGCUCCACGAGCUGCAGGCCCCGGCCUCACGCUGGAGGCCCUACUUUGCGCUCUGGCCCGAGCUGGGCCGCUUGGAGCACCCGAUGUUCUGGCCAGAGGAGGAGCGCCGGUGCCUGCUCCAGGGCACAGGCGUACCUGAGGCCGUGGAGAAGGAUUUGGCCAACA2000000009UCCGCAGCGAGUACCAGUCCAUCGUGCUGCCCUUCAUGGAAGCCCACCCCGAUCUCUUCAGCCUCAGGGUUCGCUCCCUAGAACUCUACCACCAGCUGGUGGCCCUUGUGAUGGCCUAUAGCUUUCAGGAACCACUGGAGGAAGAAGAGGAUGAAAAGGAGCCCAACUCCCCCGUGAUGGUGCCUGCUGCAGACAUACUAAACCACUUAGCCAAUCACAACGCCAAUCUAGAAUACUCUGCGGCAUGGCCCCAGCUUCUCCCUUUCACCUCAGAAUUGUCUUCGGAUGGUAGCCACUCAGCCCAUUCCUAAAGGCCAUGAGAUUUUCAACACUUAUGGGCAAAUGGCUA2000000006ACUGGCAACUGAUUCAUAUGUACGGUUUUGUUGAACCAUAUCCUGACAACACAGAUGACACAGCUGACAUUCAGAUGGUGACAGUUCGUGAGGCAGCAUUACAGGGAACAAAAACUGAAGCUGAAAGGCACCUAGUGUACGAGCGCUGGGAUUUCCUAUGCAAACUGGAGAUGGUAGGGGAAGAGGGAGCCUUUGUGAUAGGGAGGGAGGAGGUGCUGACUGAAGAGGAGCUGACCACCACACUAAAGGUACUGUGCAUGCCUGCUGAGGAGUUCAGAGAGCUUAAAGACCAGGAUGGAGGGGGAGAUGAUAAAAGGGAAGAGGGCAGCCUGACGAUCACAAAUAUUCCCAAGCUCAAAGCAUCGUGGAGACAGCUGCUUCAAAACAGUGUUCUACUG2000000006ACUUUGCAGACCUAUGCCACAG2000000006ACUUAAAA2000000006ACUGACCAAGGUUUACUCAGUAAUAAGGAAGUCUAUGCGAAACUCAGCUGGAGGGA2000000006ACAGCAAGCCUUACAGGUUCGCUAUGGUCAGAAGAUGAUCUUACAUCAGUUGUUGGAGCUGACAAGUUAGCAGUUUCCCUGUUCCCUG2000000006AAGGAACAGCAAUAAGA2000000006ACU2000000009UUAUUCUAAGCUAAUACUCAUUGAUGUUUGAAAAAGAGGAAAAUUUGGAUCUUUCUUUUGCUUACUAA2000000006ACACCAAGAGGAAAAGUAGCAAAGUUGGUGUGCUAGGAUUA2000000006ACUCAGGUAAGGGUGAUGUGUUUUAGGAUUGAGA2000000006ACAGCAGACUUGGGAAUCACUGCUAAUUGUUACUUAAAGCAUGUUACAGAUGUUUUGUUCUCAGUUUUAACCAAAGCCAGUGGACAUACGGUAGUAAUAAGUAAGUCUUGUUGUGUUUCAGCAUUUAAUAAUAGACUUUGGAGGUAG2000000006ACCCCUGGUUUAAAUCUAAGUCUAGUUUGAGGAAGUCACUUAACCU2000000009UUAUUGAAAAG2000000006ACUCUGGAUUUAAUAAGCUGUGUAACUGGUACUCGAUAGUUACCCAAAGUUCAGUCUAGAUGGCACAAACCACCUCUCAGGGAAUAAACCCUAAGACAUCA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 521 870 1268 1290 1298 1354 1442 1459 1462 1530 1571 1605 1752 1798 1809
Modification Positions Y m6A m6A m6A m6A m6A m6A m6A Y m6A m6A m6A m6A Y m6A
Genomic Coordinates 16:58516552:+ 16:58518127:+ 16:58518874:+ 16:58518896:+ 16:58518904:+ 16:58518960:+ 16:58519048:+ 16:58519065:+ 16:58519068:+ 16:58519136:+ 16:58519177:+ 16:58519211:+ 16:58519358:+ 16:58519404:+ 16:58519415:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
3TeAZFYFxgvp
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3TeAZFYFxgvp
5FhTyQVy2tKW
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
aivdrAsbdKEU
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
Mg9GixDBFQAT
nGifePrmgHfe
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BkoLW2CBToyL
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
XUkp6ghERQML
dA7YoLwHrzgR
ZuM5xpZmNuDL
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
3TeAZFYFxgvp
4HMi5ykupT9V
6AyXsheySjfx
aHkqKEJkRYyb
Ap2q43bQLNek
gZuvgwMuBfgh
jNkxUQNx8GRd
nGifePrmgHfe
NjZ8bGGJsNSR
Q36pf44ZRvxu
QmcpiJ88DBDn
QpiKdbVikVz2
UN3tNpbCPHYf
V5PvfiKsgFMd
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
msuJfBpJvM5H
NjZ8bGGJsNSR
QpiKdbVikVz2
VyCX26p5UBRL
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
dA7YoLwHrzgR
ZuM5xpZmNuDL
5FhTyQVy2tKW
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
Yfn77uLS5tv8
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
VL7zkHvkfkoB
VyCX26p5UBRL
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BkoLW2CBToyL
Lny8GcCeVGc9
UKen6WEino9G
BtsJQJ3DteUq
dknfVe6BK8aP
Yfn77uLS5tv8