General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000563578
Gene ID:	ENSG00000103174
Gene Name:	NAGPA
Sequence (UNICHARACTER ENCODING)	CGAGAGUUGGCCUCCGCCUCCCGCGACUCCCGGCGCCGGCGGUCUGGCCGUGCGCACCUUCGUGUCGCACUUCAGGGACCGCGCGGUGGCCGGCCACCUGACGCGGGCCGUUGAGCCCCUGCGCACCUUCUCGGUGCUGGAGCCCGGUGGЖCCCGGCGGCUGCGCGGCGAGACGACGCGCCACCGUGGAGGAGACGGCGCGGGCGGCCGACUGCCGUGUCGCCCAGAACGGCGGCUUCUUCCGCAUGAACUCGGGCGAGUGCCUGGGGAACGUGGUGAGCGACGAGCGGCGGGUGAGCAGCUCCGGGGGGCUGCAGAACGCGCAGUUCGGGAUCCGCCGCGACGGGACCCUGGUCACCGGGUACCUGUCUGAGGAGGAGGUGCUGGACACUGAGAACCCAUUUGUGCAGCUGCUGAGUGGGGUCGUGUGGCUGAUUCGUAAUGGAAGCAUCUACAUCAACGAGAGCCAAGCCACAGAGUGUGACGAGACACAGGAGACAGGUUCCUPUAGCAAAUUUGUGAAUGUGAUAUCAGCCAGGACGGCCAUUGGCCACGACCGGAAAGGGCAGCUGGUGCUCUUUCAUGCAGACGGCCAAACGGAGCAGCGUGGCAUCAACCUGUGGGAAAUGGCGGAGUUCCUGCUGAAACAGGACGUGGUCAACGCCAUCAACCUGGAUGGGGGUGGCUCUGCCACCUUUGUGCUCAACGGGACCUUGGCCAGUUACCCGUCAGAUCACUGGACCGCCUGGCUAGCCCUCACCCUGGCGCUGGCCUUCCUCCUGCUGAUCAGCACUGCAGCAAACCUGUCCUUGCUCCUGUCCAGAGCAGAGAGGAACCGGCGCCUGCAUGGGGЖCUAUGCAUACCACCCGCUGCAGGAGAUGAʍCGGGGAGCCUCUGGCCGCAGAGAAGGAGCAGCCAGGGGGCGCCCACAACCCCUUCAAGGЖCUGAAGCCUCAAGCUGCCCGGGGUGGCACGUCGCGAAAGCUUGUUUCCCCACGGUCUGGCUUCUGCAGGGGAAAUUUCAAGGCCACUGGCGUGGЖCCAUCUGGGUGUCCUCAGCCCCUGUGGGGCAGCCAAGUUCCUGAUAGCACUUGUGCCUCAGCCCCUCACCUGGCCACCUGCCAGGGCACCUGCAACCCUAGCAAUACCAUGCUCGCUGGAGAGGCUCAGCUGCCUGCUUCUGGCCUGCCUGUGUCUGCUGCCGAGAAGCCCGUGCCCCCGGGAGGGCUGCCGCACUGCCAAAGAGUCUCCCPCCUCCUGGGGAAGGGGCUGCCAACGAACCAGЖCUCAGUGACCACGUCAUGACAGAЖCAGCACAPCCUGGCCAGCACCCCUGGCUGGAGUGGGUUAAAGGGЖCGAGUCUGCCUUCCUGGCUGUGACACGGGЖCCCCUUUUCUACAGACCUCAUCACUGGAUUUGCCAACUAGAAUUCGAUUUCCUGUCAUAGGAAGCUCCUUGGAAGAAGGGAUGGGGGGAUGAGAUCAUGUUUACAGACCUGUUU
Sequence (SHORT NAMES ENCODING)	CGAGAGUUGGCCUCCGCCUCCCGCGACUCCCGGCGCCGGCGGUCUGGCCGUGCGCACCUUCGUGUCGCACUUCAGGGACCGCGCGGUGGCCGGCCACCUGACGCGGGCCGUUGAGCCCCUGCGCACCUUCUCGGUGCUGGAGCCCGGUGGm6ACCCGGCGGCUGCGCGGCGAGACGACGCGCCACCGUGGAGGAGACGGCGCGGGCGGCCGACUGCCGUGUCGCCCAGAACGGCGGCUUCUUCCGCAUGAACUCGGGCGAGUGCCUGGGGAACGUGGUGAGCGACGAGCGGCGGGUGAGCAGCUCCGGGGGGCUGCAGAACGCGCAGUUCGGGAUCCGCCGCGACGGGACCCUGGUCACCGGGUACCUGUCUGAGGAGGAGGUGCUGGACACUGAGAACCCAUUUGUGCAGCUGCUGAGUGGGGUCGUGUGGCUGAUUCGUAAUGGAAGCAUCUACAUCAACGAGAGCCAAGCCACAGAGUGUGACGAGACACAGGAGACAGGUUCCUYUAGCAAAUUUGUGAAUGUGAUAUCAGCCAGGACGGCCAUUGGCCACGACCGGAAAGGGCAGCUGGUGCUCUUUCAUGCAGACGGCCAAACGGAGCAGCGUGGCAUCAACCUGUGGGAAAUGGCGGAGUUCCUGCUGAAACAGGACGUGGUCAACGCCAUCAACCUGGAUGGGGGUGGCUCUGCCACCUUUGUGCUCAACGGGACCUUGGCCAGUUACCCGUCAGAUCACUGGACCGCCUGGCUAGCCCUCACCCUGGCGCUGGCCUUCCUCCUGCUGAUCAGCACUGCAGCAAACCUGUCCUUGCUCCUGUCCAGAGCAGAGAGGAACCGGCGCCUGCAUGGGGm6ACUAUGCAUACCACCCGCUGCAGGAGAUGAAmCGGGGAGCCUCUGGCCGCAGAGAAGGAGCAGCCAGGGGGCGCCCACAACCCCUUCAAGGm6ACUGAAGCCUCAAGCUGCCCGGGGUGGCACGUCGCGAAAGCUUGUUUCCCCACGGUCUGGCUUCUGCAGGGGAAAUUUCAAGGCCACUGGCGUGGm6ACCAUCUGGGUGUCCUCAGCCCCUGUGGGGCAGCCAAGUUCCUGAUAGCACUUGUGCCUCAGCCCCUCACCUGGCCACCUGCCAGGGCACCUGCAACCCUAGCAAUACCAUGCUCGCUGGAGAGGCUCAGCUGCCUGCUUCUGGCCUGCCUGUGUCUGCUGCCGAGAAGCCCGUGCCCCCGGGAGGGCUGCCGCACUGCCAAAGAGUCUCCCYCCUCCUGGGGAAGGGGCUGCCAACGAACCAGm6ACUCAGUGACCACGUCAUGACAGAm6ACAGCACAYCCUGGCCAGCACCCCUGGCUGGAGUGGGUUAAAGGGm6ACGAGUCUGCCUUCCUGGCUGUGACACGGGm6ACCCCUUUUCUACAGACCUCAUCACUGGAUUUGCCAACUAGAAUUCGAUUUCCUGUCAUAGGAAGCUCCUUGGAAGAAGGGAUGGGGGGAUGAGAUCAUGUUUACAGACCUGUUU
Sequence (MODOMICS CODE ENCODING)	CGAGAGUUGGCCUCCGCCUCCCGCGACUCCCGGCGCCGGCGGUCUGGCCGUGCGCACCUUCGUGUCGCACUUCAGGGACCGCGCGGUGGCCGGCCACCUGACGCGGGCCGUUGAGCCCCUGCGCACCUUCUCGGUGCUGGAGCCCGGUGG2000000006ACCCGGCGGCUGCGCGGCGAGACGACGCGCCACCGUGGAGGAGACGGCGCGGGCGGCCGACUGCCGUGUCGCCCAGAACGGCGGCUUCUUCCGCAUGAACUCGGGCGAGUGCCUGGGGAACGUGGUGAGCGACGAGCGGCGGGUGAGCAGCUCCGGGGGGCUGCAGAACGCGCAGUUCGGGAUCCGCCGCGACGGGACCCUGGUCACCGGGUACCUGUCUGAGGAGGAGGUGCUGGACACUGAGAACCCAUUUGUGCAGCUGCUGAGUGGGGUCGUGUGGCUGAUUCGUAAUGGAAGCAUCUACAUCAACGAGAGCCAAGCCACAGAGUGUGACGAGACACAGGAGACAGGUUCCU2000000009UUAGCAAAUUUGUGAAUGUGAUAUCAGCCAGGACGGCCAUUGGCCACGACCGGAAAGGGCAGCUGGUGCUCUUUCAUGCAGACGGCCAAACGGAGCAGCGUGGCAUCAACCUGUGGGAAAUGGCGGAGUUCCUGCUGAAACAGGACGUGGUCAACGCCAUCAACCUGGAUGGGGGUGGCUCUGCCACCUUUGUGCUCAACGGGACCUUGGCCAGUUACCCGUCAGAUCACUGGACCGCCUGGCUAGCCCUCACCCUGGCGCUGGCCUUCCUCCUGCUGAUCAGCACUGCAGCAAACCUGUCCUUGCUCCUGUCCAGAGCAGAGAGGAACCGGCGCCUGCAUGGGG2000000006ACUAUGCAUACCACCCGCUGCAGGAGAUGA2000000090ACGGGGAGCCUCUGGCCGCAGAGAAGGAGCAGCCAGGGGGCGCCCACAACCCCUUCAAGG2000000006ACUGAAGCCUCAAGCUGCCCGGGGUGGCACGUCGCGAAAGCUUGUUUCCCCACGGUCUGGCUUCUGCAGGGGAAAUUUCAAGGCCACUGGCGUGG2000000006ACCAUCUGGGUGUCCUCAGCCCCUGUGGGGCAGCCAAGUUCCUGAUAGCACUUGUGCCUCAGCCCCUCACCUGGCCACCUGCCAGGGCACCUGCAACCCUAGCAAUACCAUGCUCGCUGGAGAGGCUCAGCUGCCUGCUUCUGGCCUGCCUGUGUCUGCUGCCGAGAAGCCCGUGCCCCCGGGAGGGCUGCCGCACUGCCAAAGAGUCUCCC2000000009UCCUCCUGGGGAAGGGGCUGCCAACGAACCAG2000000006ACUCAGUGACCACGUCAUGACAGA2000000006ACAGCACA2000000009UCCUGGCCAGCACCCCUGGCUGGAGUGGGUUAAAGGG2000000006ACGAGUCUGCCUUCCUGGCUGUGACACGGG2000000006ACCCCUUUUCUACAGACCUCAUCACUGGAUUUGCCAACUAGAAUUCGAUUUCCUGUCAUAGGAAGCUCCUUGGAAGAAGGGAUGGGGGGAUGAGAUCAUGUUUACAGACCUGUUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	151	507	852	882	942	1037	1249	1281	1305	1313	1350	1380
Modification Positions	m6A	Y	m6A	Am	m6A	m6A	Y	m6A	m6A	Y	m6A	m6A
Genomic Coordinates	16:5033482:-	16:5030487:-	16:5025572:-	16:5025542:-	16:5025482:-	16:5025387:-	16:5025175:-	16:5025143:-	16:5025119:-	16:5025111:-	16:5025074:-	16:5025044:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	jaSvBXBkn3xs YkSG92k4EHDM	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn nfCHyrYzE6fB Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 nfCHyrYzE6fB BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8