Modomics - A Database of RNA Modifications

General Data

RNA Type unknown
Original Source Sci-ModoM
Transcript ID: ENST00000566823
Gene ID: ENSG00000103512
Gene Name: NOMO1
Sequence (UNICHARACTER ENCODING) CUAUUUGGACAGAGCUAACUUGUAGUUGGUGUGGGGAGUGCAAACUUUGCAAAGAAUUUGGUUCUUUUCUGGUGGUCUUAGCCUGAGGAUGUCAAGUGUGAGCCUAGAGGGUGACGUUUCCUCUCCUGGCUCCUUACCACCUGCCGUGAAGAUGAUCUACUCUGGCCUUUCUCUGUGGAAAAUGGCUGCAAAAUAAUGAAACAGGCUGUCACGGAAUUUUCUCCUCCUCUUUCUCCAGGGGUGUUGAAAUAGUCACUUCCUACAGCGAUGCGGAAACAUCUUGGGCUUUGGGGUCACACUUCCCCUGAGUUCAGAGCCUUCAUAGAUGUGUGGCAGCCUUCUUAGCUGAGUGACCUUGGGCAAGUUACUCUUAGUCUCUUCGUGCUUGACUUUCCUCGUCUAUAAGACGGGGUGAUGAUCCCGACCUUGCCAGUGGUAGAAAGCAAAGCAGCCGCGGGCCUCAUGCAAUGUGCAUGGUGCCUGGCAGCUGGUCGGUGCUCAGCACACAGAGCUGUGAUGGGUCUCAUGCAAUGUGCAUGGUGCCUGGCAGCUGGUCGGUGCUCAGCACACAGAGCUGUGGCUGCCCCUGGUGCCGUUCCAGGGAUGCUGUAUUUUUAGGAUUUGCCAGCUUACGAGCCUCUCAAGCAUCGUCCCUUUGAAGUCAGCCCCGUUGUGGAUCCUCAGUUGUAUCACGUACCUCCCUCAUCAGAAUUGGCUCAUAAUAAUUUUUUGUGUUUCAUAAAGUCAGAUCCUCAGAGGACCGUAAUUGUCAAGGUUGGGUACUCAUAAAAAGGCUGCAGGCUCUGACAGCCUUAUCAGAAGCCACAGUCUCAGAGACACUGGGGACACAUGCCCGCCACUGAUGGAAUAGCCCGCUGAGGUUGAUACUUUGAAGGCAGCAACCUUGGUUUGGAUGUGUAGUCUUGGGGAUUUCUUUAAAAACAUAAAGUUCUUUACAUCACAGCCAUACGUUAGGUUUUAGUUUUCAUUUGCUUUGCCAGAGCUGUCCUUGUAAAAAUAACUUCUUCCCAUGUGUGCACAGAACUAUGUUGUGCUUCUGGACUCCACACUCCCCAGAUCCCAGUAUGACUACAUCUUGCCUCAAGUUUCUUUCACCGCAGUGGGCUACCAUAAACACAUCACCUUGAUUUUUAAUCCCACGAGGAAGCUGCCUGAACAGGACAUCGCACAAGGAUCCUACAUUGCCCUGCCAUUGACGCUGCUGGUUCUGCUGGCCGGUUACAACCAUGACAAGCUCAUUCCUUUGCUGCUGCAGUUGACAAGCCGGCUACAGGGAGUCCGCGCGCUCGGCCAGGCAGCCUCUGACAAUAGCGGCCCAGAAGAUGCAAAGAGACAAGCCAAGAAACAGAAGACAAGGCGGЖCUUGAGGAGGAAGGGGЖCAGUUGCAGUCUCACUUGGGACAGGCCACAGCCAGGGGUCCGGCCACUACCCGCCCGUGGGAUAAAAGCCAAAAGCAUGCGUCAGCUAЖCUUCAGCCUGUGCUGCUGGGCCCGCACCCCAUGUCCCUUGUCACUGUGGCAPCCUGCACCCAPCCUCACCCCUCCGUAGAGCCCCUCGUGCAAUGCAAUGAAUGGЖCCCPCCUGUCACUCUGCUGAACAGAAUUUAUUUUCUGAGUCAAAUAUAAUUUAUUAUUAUUUUUGUCAAAGAAGUAUUUAAGCUGUGCUGUGGUGUGAGAAUGUCAUUCUUGAUCUUCAGCCUUCGUUUGCAAGGAGAGUUCCAGUUGACGUGGUGUUUGGUUCCAUGGCGGGGUACCCUAGGGAUUCAUCUGUUUUCUUCACUUCCCUUUGCAUCUGAGAUCCUGCUGGAAACCACAGCAACCUGUAUCCACUAUUAGGAGGUAAAAAUCAAUAAAAUGGCCCAUUCAUUUGUGUUGUAGCUC
Sequence (SHORT NAMES ENCODING) CUAUUUGGACAGAGCUAACUUGUAGUUGGUGUGGGGAGUGCAAACUUUGCAAAGAAUUUGGUUCUUUUCUGGUGGUCUUAGCCUGAGGAUGUCAAGUGUGAGCCUAGAGGGUGACGUUUCCUCUCCUGGCUCCUUACCACCUGCCGUGAAGAUGAUCUACUCUGGCCUUUCUCUGUGGAAAAUGGCUGCAAAAUAAUGAAACAGGCUGUCACGGAAUUUUCUCCUCCUCUUUCUCCAGGGGUGUUGAAAUAGUCACUUCCUACAGCGAUGCGGAAACAUCUUGGGCUUUGGGGUCACACUUCCCCUGAGUUCAGAGCCUUCAUAGAUGUGUGGCAGCCUUCUUAGCUGAGUGACCUUGGGCAAGUUACUCUUAGUCUCUUCGUGCUUGACUUUCCUCGUCUAUAAGACGGGGUGAUGAUCCCGACCUUGCCAGUGGUAGAAAGCAAAGCAGCCGCGGGCCUCAUGCAAUGUGCAUGGUGCCUGGCAGCUGGUCGGUGCUCAGCACACAGAGCUGUGAUGGGUCUCAUGCAAUGUGCAUGGUGCCUGGCAGCUGGUCGGUGCUCAGCACACAGAGCUGUGGCUGCCCCUGGUGCCGUUCCAGGGAUGCUGUAUUUUUAGGAUUUGCCAGCUUACGAGCCUCUCAAGCAUCGUCCCUUUGAAGUCAGCCCCGUUGUGGAUCCUCAGUUGUAUCACGUACCUCCCUCAUCAGAAUUGGCUCAUAAUAAUUUUUUGUGUUUCAUAAAGUCAGAUCCUCAGAGGACCGUAAUUGUCAAGGUUGGGUACUCAUAAAAAGGCUGCAGGCUCUGACAGCCUUAUCAGAAGCCACAGUCUCAGAGACACUGGGGACACAUGCCCGCCACUGAUGGAAUAGCCCGCUGAGGUUGAUACUUUGAAGGCAGCAACCUUGGUUUGGAUGUGUAGUCUUGGGGAUUUCUUUAAAAACAUAAAGUUCUUUACAUCACAGCCAUACGUUAGGUUUUAGUUUUCAUUUGCUUUGCCAGAGCUGUCCUUGUAAAAAUAACUUCUUCCCAUGUGUGCACAGAACUAUGUUGUGCUUCUGGACUCCACACUCCCCAGAUCCCAGUAUGACUACAUCUUGCCUCAAGUUUCUUUCACCGCAGUGGGCUACCAUAAACACAUCACCUUGAUUUUUAAUCCCACGAGGAAGCUGCCUGAACAGGACAUCGCACAAGGAUCCUACAUUGCCCUGCCAUUGACGCUGCUGGUUCUGCUGGCCGGUUACAACCAUGACAAGCUCAUUCCUUUGCUGCUGCAGUUGACAAGCCGGCUACAGGGAGUCCGCGCGCUCGGCCAGGCAGCCUCUGACAAUAGCGGCCCAGAAGAUGCAAAGAGACAAGCCAAGAAACAGAAGACAAGGCGGm6ACUUGAGGAGGAAGGGGm6ACAGUUGCAGUCUCACUUGGGACAGGCCACAGCCAGGGGUCCGGCCACUACCCGCCCGUGGGAUAAAAGCCAAAAGCAUGCGUCAGCUAm6ACUUCAGCCUGUGCUGCUGGGCCCGCACCCCAUGUCCCUUGUCACUGUGGCAYCCUGCACCCAYCCUCACCCCUCCGUAGAGCCCCUCGUGCAAUGCAAUGAAUGGm6ACCCYCCUGUCACUCUGCUGAACAGAAUUUAUUUUCUGAGUCAAAUAUAAUUUAUUAUUAUUUUUGUCAAAGAAGUAUUUAAGCUGUGCUGUGGUGUGAGAAUGUCAUUCUUGAUCUUCAGCCUUCGUUUGCAAGGAGAGUUCCAGUUGACGUGGUGUUUGGUUCCAUGGCGGGGUACCCUAGGGAUUCAUCUGUUUUCUUCACUUCCCUUUGCAUCUGAGAUCCUGCUGGAAACCACAGCAACCUGUAUCCACUAUUAGGAGGUAAAAAUCAAUAAAAUGGCCCAUUCAUUUGUGUUGUAGCUC
Sequence (MODOMICS CODE ENCODING) CUAUUUGGACAGAGCUAACUUGUAGUUGGUGUGGGGAGUGCAAACUUUGCAAAGAAUUUGGUUCUUUUCUGGUGGUCUUAGCCUGAGGAUGUCAAGUGUGAGCCUAGAGGGUGACGUUUCCUCUCCUGGCUCCUUACCACCUGCCGUGAAGAUGAUCUACUCUGGCCUUUCUCUGUGGAAAAUGGCUGCAAAAUAAUGAAACAGGCUGUCACGGAAUUUUCUCCUCCUCUUUCUCCAGGGGUGUUGAAAUAGUCACUUCCUACAGCGAUGCGGAAACAUCUUGGGCUUUGGGGUCACACUUCCCCUGAGUUCAGAGCCUUCAUAGAUGUGUGGCAGCCUUCUUAGCUGAGUGACCUUGGGCAAGUUACUCUUAGUCUCUUCGUGCUUGACUUUCCUCGUCUAUAAGACGGGGUGAUGAUCCCGACCUUGCCAGUGGUAGAAAGCAAAGCAGCCGCGGGCCUCAUGCAAUGUGCAUGGUGCCUGGCAGCUGGUCGGUGCUCAGCACACAGAGCUGUGAUGGGUCUCAUGCAAUGUGCAUGGUGCCUGGCAGCUGGUCGGUGCUCAGCACACAGAGCUGUGGCUGCCCCUGGUGCCGUUCCAGGGAUGCUGUAUUUUUAGGAUUUGCCAGCUUACGAGCCUCUCAAGCAUCGUCCCUUUGAAGUCAGCCCCGUUGUGGAUCCUCAGUUGUAUCACGUACCUCCCUCAUCAGAAUUGGCUCAUAAUAAUUUUUUGUGUUUCAUAAAGUCAGAUCCUCAGAGGACCGUAAUUGUCAAGGUUGGGUACUCAUAAAAAGGCUGCAGGCUCUGACAGCCUUAUCAGAAGCCACAGUCUCAGAGACACUGGGGACACAUGCCCGCCACUGAUGGAAUAGCCCGCUGAGGUUGAUACUUUGAAGGCAGCAACCUUGGUUUGGAUGUGUAGUCUUGGGGAUUUCUUUAAAAACAUAAAGUUCUUUACAUCACAGCCAUACGUUAGGUUUUAGUUUUCAUUUGCUUUGCCAGAGCUGUCCUUGUAAAAAUAACUUCUUCCCAUGUGUGCACAGAACUAUGUUGUGCUUCUGGACUCCACACUCCCCAGAUCCCAGUAUGACUACAUCUUGCCUCAAGUUUCUUUCACCGCAGUGGGCUACCAUAAACACAUCACCUUGAUUUUUAAUCCCACGAGGAAGCUGCCUGAACAGGACAUCGCACAAGGAUCCUACAUUGCCCUGCCAUUGACGCUGCUGGUUCUGCUGGCCGGUUACAACCAUGACAAGCUCAUUCCUUUGCUGCUGCAGUUGACAAGCCGGCUACAGGGAGUCCGCGCGCUCGGCCAGGCAGCCUCUGACAAUAGCGGCCCAGAAGAUGCAAAGAGACAAGCCAAGAAACAGAAGACAAGGCGG2000000006ACUUGAGGAGGAAGGGG2000000006ACAGUUGCAGUCUCACUUGGGACAGGCCACAGCCAGGGGUCCGGCCACUACCCGCCCGUGGGAUAAAAGCCAAAAGCAUGCGUCAGCUA2000000006ACUUCAGCCUGUGCUGCUGGGCCCGCACCCCAUGUCCCUUGUCACUGUGGCA2000000009UCCUGCACCCA2000000009UCCUCACCCCUCCGUAGAGCCCCUCGUGCAAUGCAAUGAAUGG2000000006ACCC2000000009UCCUGUCACUCUGCUGAACAGAAUUUAUUUUCUGAGUCAAAUAUAAUUUAUUAUUAUUUUUGUCAAAGAAGUAUUUAAGCUGUGCUGUGGUGUGAGAAUGUCAUUCUUGAUCUUCAGCCUUCGUUUGCAAGGAGAGUUCCAGUUGACGUGGUGUUUGGUUCCAUGGCGGGGUACCCUAGGGAUUCAUCUGUUUUCUUCACUUCCCUUUGCAUCUGAGAUCCUGCUGGAAACCACAGCAACCUGUAUCCACUAUUAGGAGGUAAAAAUCAAUAAAAUGGCCCAUUCAUUUGUGUUGUAGCUC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1382 1399 1488 1540 1551 1594 1598
Modification Positions m6A m6A m6A Y Y m6A Y
Genomic Coordinates 16:14895640:+ 16:14895657:+ 16:14895746:+ 16:14895798:+ 16:14895809:+ 16:14895852:+ 16:14895856:+
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
6UuHp6YApVKv
jNkxUQNx8GRd
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
8cMbzB4aD5Se
93arJtwJmuS9
BkoLW2CBToyL
nfCHyrYzE6fB
Lny8GcCeVGc9
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8