General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000561689
Gene ID:	ENSG00000188603
Gene Name:	CLN3
Sequence (UNICHARACTER ENCODING)	GCAGAACAUUCUGCUGCUCUUAAAGGUACAGGCCUCAGGGUCCCUGCUGUAGACGGGGCGGGGGAGAGUACGAUGGGUGGGGCGUGGUGGGUCGUAGGGCGCUCGAGAUGGAGCCCCCAGCUUCCUUGAUGGAUCGCGGGGCGCGAGUGCCCUAGACAAGCCGGAGCUGGGACCGGCAAUCGGGCGUUGAUCCUUGUCACCUGUCGCAGACCCUCAPCCCUCCCGUGGGAGCCCCCUUUGGЖCACUCUAUGACCCUGGACCCUCGGGGGACCUGAACUUGAUGCGAUGGGAGGCUGUGCAGGCUCGCGGCGGCGCUUUUCGGAUUCCGAGGGGGAGGAGЖCCGUCCCGGAGCCCCGGCUCCCUCUGUUGGACCAUCAGGGCGCGCAUUGGAAGAACGCGGUGGGCUUCUGGCUGCUGGGCCUUUGCAACAACUUCUCUUAUGUGGUGAUGCUGAGUGCCGCCCACGACAPCCUUAGCCACAAGAGGACAUCGGGAAACCAGAGCCAUGPGGACCCAGGCCCAACGCCGAUCCCCCACAACAGCUCAUCACGAUPUGACUGCAACUCUGUCUCUACGGCUGCUGUGCUCCUGGCGGACAPCCUCCCCACACUCGUCAUCAAAUUGUUGGCUCCUCUUGGCCUUCACCUGCUGCCCUACAGCCCCCGGGUUCUCGUCAGUGGGAUUUGUGCUGCUGGAAGCUUCGUCCUGGUUGCCUUUUCUCAUUCUGUGGGGACCAGCCUGUGUGGUGUGGUCUUCGCUAGCAUCUCAUCAGGCCUUGGGGAGGUCACCUUCCUCUCCCUCACUGCCUUCUACCCCAGGGCCGUGAUCUCCUGGUGGUCCUCAGGGACUGGGGGAGCUGGGCUGCUGGGGGCCCUGUCCUACCUGGGCCUCACCCAGGCCGGCCUCUCCCCUCAGCAGACCCUGCUGUCCAUGCUGGGUAUCCCUGCCCUGCUGCUGGCCAGCUAUUUCUUGUUGCUCACAUCUCCUGAGGCCCAGGACCCUGGAGGGGAAGAAGAAGCAGAGAGCGCAGCCCGGCAGCCCCUCAPAAGAЖCCGAGGCCCCGGAGUCGAAGCCAGGCUCCAGCUCCAGCCUCUCCCUUCGGGAAAGGUGGACAGUGUUCAAGGGUCUGCUGUGGUACAUUGUUCCCUUGGUCGUAGUUUACUUUGCCGAGUAUUUCAUUAACCAGGGACUUUUUGAACUCCUCUUUUUCUGGAACACUUCCCUGAGUCACGCUCAGCAAUACCGCUGGUAAGAGGAGCGAGGGCAGUGGGCUGGGAGGGCGCCGUGGUGAUGCAGCUGCCCUGCCCAGUAGGCACCGGGGGGAGCGGGAUGGUCCCUGGAGGAGCCUCCUCUCCUCCCCCCAACCCUAACCUCAGGUACCAGAUGCUGUACCAGGCUGGCGUCUUUGCCUCCCGCUCUUCUCUCCGCUGCUGUCGCAUCCGUUUCACCUGGGCCCUGGCCCUGCUGCAGUGCCUCAACCUGGUGUUCCUGCUGGCAGACGUGUGGUUCGGCUUUCUGCCAAGCAUCUACCUCGUCUUCCUGAUCAUUCUGUAUGAGGGGCUCCUGGGAGGCGCAGCCUACGUGAACACCUUCCACAACAUCGCCCUGGAGACCAGUGAUGAGCACCGGGAGUUUGCAAUGGCGGCCACCUGCAUCUCUGACACACUGGGGAUCUCCCUGUCGGGGCUCCUGGCUUUGCCUCUGCAUGACUUCCUCUGCCAGCUCUCCUGAUACUCGGGAUCCUCAGGACGCAGGUCACAUUCACCUGUGGGCAGAGGGACAGGUCAGACACCCAGGCCCACCCCAGAGACCCUCCAUGAЖCUGUGCUCCCAGCCUUCCCGGCAGGUCUGGGAGUAGGGAAGGGCUGAAGCCUUGUUUCCCUUGCAGGGGGGCCAGCCAUUGUCUCCCACUUGGGGAGUUUCUUCCUGGCAUCAUGCCUUCUGAAUAAAUGCCGAUUU
Sequence (SHORT NAMES ENCODING)	GCAGAACAUUCUGCUGCUCUUAAAGGUACAGGCCUCAGGGUCCCUGCUGUAGACGGGGCGGGGGAGAGUACGAUGGGUGGGGCGUGGUGGGUCGUAGGGCGCUCGAGAUGGAGCCCCCAGCUUCCUUGAUGGAUCGCGGGGCGCGAGUGCCCUAGACAAGCCGGAGCUGGGACCGGCAAUCGGGCGUUGAUCCUUGUCACCUGUCGCAGACCCUCAYCCCUCCCGUGGGAGCCCCCUUUGGm6ACACUCUAUGACCCUGGACCCUCGGGGGACCUGAACUUGAUGCGAUGGGAGGCUGUGCAGGCUCGCGGCGGCGCUUUUCGGAUUCCGAGGGGGAGGAGm6ACCGUCCCGGAGCCCCGGCUCCCUCUGUUGGACCAUCAGGGCGCGCAUUGGAAGAACGCGGUGGGCUUCUGGCUGCUGGGCCUUUGCAACAACUUCUCUUAUGUGGUGAUGCUGAGUGCCGCCCACGACAYCCUUAGCCACAAGAGGACAUCGGGAAACCAGAGCCAUGYGGACCCAGGCCCAACGCCGAUCCCCCACAACAGCUCAUCACGAUYUGACUGCAACUCUGUCUCUACGGCUGCUGUGCUCCUGGCGGACAYCCUCCCCACACUCGUCAUCAAAUUGUUGGCUCCUCUUGGCCUUCACCUGCUGCCCUACAGCCCCCGGGUUCUCGUCAGUGGGAUUUGUGCUGCUGGAAGCUUCGUCCUGGUUGCCUUUUCUCAUUCUGUGGGGACCAGCCUGUGUGGUGUGGUCUUCGCUAGCAUCUCAUCAGGCCUUGGGGAGGUCACCUUCCUCUCCCUCACUGCCUUCUACCCCAGGGCCGUGAUCUCCUGGUGGUCCUCAGGGACUGGGGGAGCUGGGCUGCUGGGGGCCCUGUCCUACCUGGGCCUCACCCAGGCCGGCCUCUCCCCUCAGCAGACCCUGCUGUCCAUGCUGGGUAUCCCUGCCCUGCUGCUGGCCAGCUAUUUCUUGUUGCUCACAUCUCCUGAGGCCCAGGACCCUGGAGGGGAAGAAGAAGCAGAGAGCGCAGCCCGGCAGCCCCUCAYAAGAm6ACCGAGGCCCCGGAGUCGAAGCCAGGCUCCAGCUCCAGCCUCUCCCUUCGGGAAAGGUGGACAGUGUUCAAGGGUCUGCUGUGGUACAUUGUUCCCUUGGUCGUAGUUUACUUUGCCGAGUAUUUCAUUAACCAGGGACUUUUUGAACUCCUCUUUUUCUGGAACACUUCCCUGAGUCACGCUCAGCAAUACCGCUGGUAAGAGGAGCGAGGGCAGUGGGCUGGGAGGGCGCCGUGGUGAUGCAGCUGCCCUGCCCAGUAGGCACCGGGGGGAGCGGGAUGGUCCCUGGAGGAGCCUCCUCUCCUCCCCCCAACCCUAACCUCAGGUACCAGAUGCUGUACCAGGCUGGCGUCUUUGCCUCCCGCUCUUCUCUCCGCUGCUGUCGCAUCCGUUUCACCUGGGCCCUGGCCCUGCUGCAGUGCCUCAACCUGGUGUUCCUGCUGGCAGACGUGUGGUUCGGCUUUCUGCCAAGCAUCUACCUCGUCUUCCUGAUCAUUCUGUAUGAGGGGCUCCUGGGAGGCGCAGCCUACGUGAACACCUUCCACAACAUCGCCCUGGAGACCAGUGAUGAGCACCGGGAGUUUGCAAUGGCGGCCACCUGCAUCUCUGACACACUGGGGAUCUCCCUGUCGGGGCUCCUGGCUUUGCCUCUGCAUGACUUCCUCUGCCAGCUCUCCUGAUACUCGGGAUCCUCAGGACGCAGGUCACAUUCACCUGUGGGCAGAGGGACAGGUCAGACACCCAGGCCCACCCCAGAGACCCUCCAUGAm6ACUGUGCUCCCAGCCUUCCCGGCAGGUCUGGGAGUAGGGAAGGGCUGAAGCCUUGUUUCCCUUGCAGGGGGGCCAGCCAUUGUCUCCCACUUGGGGAGUUUCUUCCUGGCAUCAUGCCUUCUGAAUAAAUGCCGAUUU
Sequence (MODOMICS CODE ENCODING)	GCAGAACAUUCUGCUGCUCUUAAAGGUACAGGCCUCAGGGUCCCUGCUGUAGACGGGGCGGGGGAGAGUACGAUGGGUGGGGCGUGGUGGGUCGUAGGGCGCUCGAGAUGGAGCCCCCAGCUUCCUUGAUGGAUCGCGGGGCGCGAGUGCCCUAGACAAGCCGGAGCUGGGACCGGCAAUCGGGCGUUGAUCCUUGUCACCUGUCGCAGACCCUCA2000000009UCCCUCCCGUGGGAGCCCCCUUUGG2000000006ACACUCUAUGACCCUGGACCCUCGGGGGACCUGAACUUGAUGCGAUGGGAGGCUGUGCAGGCUCGCGGCGGCGCUUUUCGGAUUCCGAGGGGGAGGAG2000000006ACCGUCCCGGAGCCCCGGCUCCCUCUGUUGGACCAUCAGGGCGCGCAUUGGAAGAACGCGGUGGGCUUCUGGCUGCUGGGCCUUUGCAACAACUUCUCUUAUGUGGUGAUGCUGAGUGCCGCCCACGACA2000000009UCCUUAGCCACAAGAGGACAUCGGGAAACCAGAGCCAUG2000000009UGGACCCAGGCCCAACGCCGAUCCCCCACAACAGCUCAUCACGAU2000000009UUGACUGCAACUCUGUCUCUACGGCUGCUGUGCUCCUGGCGGACA2000000009UCCUCCCCACACUCGUCAUCAAAUUGUUGGCUCCUCUUGGCCUUCACCUGCUGCCCUACAGCCCCCGGGUUCUCGUCAGUGGGAUUUGUGCUGCUGGAAGCUUCGUCCUGGUUGCCUUUUCUCAUUCUGUGGGGACCAGCCUGUGUGGUGUGGUCUUCGCUAGCAUCUCAUCAGGCCUUGGGGAGGUCACCUUCCUCUCCCUCACUGCCUUCUACCCCAGGGCCGUGAUCUCCUGGUGGUCCUCAGGGACUGGGGGAGCUGGGCUGCUGGGGGCCCUGUCCUACCUGGGCCUCACCCAGGCCGGCCUCUCCCCUCAGCAGACCCUGCUGUCCAUGCUGGGUAUCCCUGCCCUGCUGCUGGCCAGCUAUUUCUUGUUGCUCACAUCUCCUGAGGCCCAGGACCCUGGAGGGGAAGAAGAAGCAGAGAGCGCAGCCCGGCAGCCCCUCA2000000009UAAGA2000000006ACCGAGGCCCCGGAGUCGAAGCCAGGCUCCAGCUCCAGCCUCUCCCUUCGGGAAAGGUGGACAGUGUUCAAGGGUCUGCUGUGGUACAUUGUUCCCUUGGUCGUAGUUUACUUUGCCGAGUAUUUCAUUAACCAGGGACUUUUUGAACUCCUCUUUUUCUGGAACACUUCCCUGAGUCACGCUCAGCAAUACCGCUGGUAAGAGGAGCGAGGGCAGUGGGCUGGGAGGGCGCCGUGGUGAUGCAGCUGCCCUGCCCAGUAGGCACCGGGGGGAGCGGGAUGGUCCCUGGAGGAGCCUCCUCUCCUCCCCCCAACCCUAACCUCAGGUACCAGAUGCUGUACCAGGCUGGCGUCUUUGCCUCCCGCUCUUCUCUCCGCUGCUGUCGCAUCCGUUUCACCUGGGCCCUGGCCCUGCUGCAGUGCCUCAACCUGGUGUUCCUGCUGGCAGACGUGUGGUUCGGCUUUCUGCCAAGCAUCUACCUCGUCUUCCUGAUCAUUCUGUAUGAGGGGCUCCUGGGAGGCGCAGCCUACGUGAACACCUUCCACAACAUCGCCCUGGAGACCAGUGAUGAGCACCGGGAGUUUGCAAUGGCGGCCACCUGCAUCUCUGACACACUGGGGAUCUCCCUGUCGGGGCUCCUGGCUUUGCCUCUGCAUGACUUCCUCUGCCAGCUCUCCUGAUACUCGGGAUCCUCAGGACGCAGGUCACAUUCACCUGUGGGCAGAGGGACAGGUCAGACACCCAGGCCCACCCCAGAGACCCUCCAUGA2000000006ACUGUGCUCCCAGCCUUCCCGGCAGGUCUGGGAGUAGGGAAGGGCUGAAGCCUUGUUUCCCUUGCAGGGGGGCCAGCCAUUGUCUCCCACUUGGGGAGUUUCUUCCUGGCAUCAUGCCUUCUGAAUAAAUGCCGAUUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	217	242	340	470	509	554	599	1046	1051	1820
Modification Positions	Y	m6A	m6A	Y	Y	Y	Y	Y	m6A	m6A
Genomic Coordinates	16:28491828:-	16:28491803:-	16:28491552:-	16:28489327:-	16:28488661:-	16:28488616:-	16:28487722:-	16:28484035:-	16:28484030:-	16:28477426:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se KTLz8piFYdwC Lny8GcCeVGc9 BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 CxQaH6qDB9bC dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8