General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000565844
Gene ID:	ENSG00000103550
Gene Name:	KNOP1
Sequence (UNICHARACTER ENCODING)	GGGCCGGCGACUCGAAGUGGACUUCCGGGUCACGGCGGAGCUGGCUCUCACGUGGAGGCGGGGAAAUUUCGCCCACCGGAAUGAUCACCAAGACACACAAAGUAGACCUUGGGCUCCCAGAGAAGAAAAAGAAGAAGAAAGUGGUCAAAGAACCAGAGЖCUCGAUACUCAGUUUUAAЖCAAUGAUGAUUACUUUGCUGAUGUUUCUCCUPUAAGAGCUACAPCCCCCUCUAAGAGUGUGGCCCAUGGGCAGGCACCUGAGAUGCCUCUAGUGAAGAAAAAGAAGAAGAAAAAGAAGGGUGUCAGCACCCUUUGCGAGGAGCAUGUAGAACCUGAGЖCCACGCUGCCUGCUAGACGGЖCAGAGAAGUCACCCAGCCUCAGGAAGCAGGUGUUUGGCCACUUGGAGUUCCUCAGUGGGGAAAAGAAAAAUAAGAAGUCACCUCUAGCCAUGUCCCAUGCCUCUGGGGUGAAAACCUCCCCAGЖCCCUAGACAGGGUGAGGAGGAAACCAGAGUUGGCAAGAAGCUCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGACCCCACAGCCUUCUCGGUCCAGGACCCUUGGUUCUGUGAGGCCAGGGAGGCCAGGGЖUGUUGGGGЖCACUUGCUCAGUGGGGAAGAAGGAUGAGGAЖCAGGCAGCCUUGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAAUGGGAAGGUGAAGAAGAAAAAAAAAAUCCACCAGGAGGGAGAUGCCCUCCCAGGCCACUCCAAGCCCUCCAGGUCCAUGGAGAGCAGCCCUAGGAAAGGAAGUAAAAAGAAGCCAGUCAAAGUUGAGGCUCCGGAAUACAPCCCCAPAAGUGAUGACCCUAAGGCCUCCGCAAAGAAAAAGAUGAAGUCCAAAAAGAAGGUAGAGCAGCCAGUCAUCGAGGAGCCAGCUCUGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAGUGGGGUAGCAGGAGACCCUUGGAAGGAGGAAACAGACACGGACUUAGAGGUGGUGUUGGAAAAAAAAGGCAACAUGGAUGAGGCGCACAUAGЖCCAGGUGAGGCGAAAGGCCUUGCAAGAAGAGAUCGAUCGCGAGUCAGGCAAAACGGAAGCUUCUGAAACCAGGAAGUGGACGGUAAGUUUGGGGCUAGGGCUCUGCGAGGAGGUGGCACGCUCGGCCUCCCGACGCUUCCCCUCGCCUCCAGCAUGAGGAGUGGAGCAGGAGAACCAAGUAUGUCCAGGCCCCAGAGGCAGCCCUAGCCUGCAGCAGGCUCCCUCCACAGCAGAAUUUGUCCUGAGCUAAUUUCCUUCCUUCUGAAAAGGGCGCUUGCCUCCCUCCUAGAGAGCUGGCCCGGUGAGAUAAGCUGCCUGAACCUUUGUCUCA
Sequence (SHORT NAMES ENCODING)	GGGCCGGCGACUCGAAGUGGACUUCCGGGUCACGGCGGAGCUGGCUCUCACGUGGAGGCGGGGAAAUUUCGCCCACCGGAAUGAUCACCAAGACACACAAAGUAGACCUUGGGCUCCCAGAGAAGAAAAAGAAGAAGAAAGUGGUCAAAGAACCAGAGm6ACUCGAUACUCAGUUUUAAm6ACAAUGAUGAUUACUUUGCUGAUGUUUCUCCUYUAAGAGCUACAYCCCCCUCUAAGAGUGUGGCCCAUGGGCAGGCACCUGAGAUGCCUCUAGUGAAGAAAAAGAAGAAGAAAAAGAAGGGUGUCAGCACCCUUUGCGAGGAGCAUGUAGAACCUGAGm6ACCACGCUGCCUGCUAGACGGm6ACAGAGAAGUCACCCAGCCUCAGGAAGCAGGUGUUUGGCCACUUGGAGUUCCUCAGUGGGGAAAAGAAAAAUAAGAAGUCACCUCUAGCCAUGUCCCAUGCCUCUGGGGUGAAAACCUCCCCAGm6ACCCUAGACAGGGUGAGGAGGAAACCAGAGUUGGCAAGAAGCUCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGACCCCACAGCCUUCUCGGUCCAGGACCCUUGGUUCUGUGAGGCCAGGGAGGCCAGGGm6AUGUUGGGGm6ACACUUGCUCAGUGGGGAAGAAGGAUGAGGAm6ACAGGCAGCCUUGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAAUGGGAAGGUGAAGAAGAAAAAAAAAAUCCACCAGGAGGGAGAUGCCCUCCCAGGCCACUCCAAGCCCUCCAGGUCCAUGGAGAGCAGCCCUAGGAAAGGAAGUAAAAAGAAGCCAGUCAAAGUUGAGGCUCCGGAAUACAYCCCCAYAAGUGAUGACCCUAAGGCCUCCGCAAAGAAAAAGAUGAAGUCCAAAAAGAAGGUAGAGCAGCCAGUCAUCGAGGAGCCAGCUCUGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAGUGGGGUAGCAGGAGACCCUUGGAAGGAGGAAACAGACACGGACUUAGAGGUGGUGUUGGAAAAAAAAGGCAACAUGGAUGAGGCGCACAUAGm6ACCAGGUGAGGCGAAAGGCCUUGCAAGAAGAGAUCGAUCGCGAGUCAGGCAAAACGGAAGCUUCUGAAACCAGGAAGUGGACGGUAAGUUUGGGGCUAGGGCUCUGCGAGGAGGUGGCACGCUCGGCCUCCCGACGCUUCCCCUCGCCUCCAGCAUGAGGAGUGGAGCAGGAGAACCAAGUAUGUCCAGGCCCCAGAGGCAGCCCUAGCCUGCAGCAGGCUCCCUCCACAGCAGAAUUUGUCCUGAGCUAAUUUCCUUCCUUCUGAAAAGGGCGCUUGCCUCCCUCCUAGAGAGCUGGCCCGGUGAGAUAAGCUGCCUGAACCUUUGUCUCA
Sequence (MODOMICS CODE ENCODING)	GGGCCGGCGACUCGAAGUGGACUUCCGGGUCACGGCGGAGCUGGCUCUCACGUGGAGGCGGGGAAAUUUCGCCCACCGGAAUGAUCACCAAGACACACAAAGUAGACCUUGGGCUCCCAGAGAAGAAAAAGAAGAAGAAAGUGGUCAAAGAACCAGAG2000000006ACUCGAUACUCAGUUUUAA2000000006ACAAUGAUGAUUACUUUGCUGAUGUUUCUCCU2000000009UUAAGAGCUACA2000000009UCCCCCUCUAAGAGUGUGGCCCAUGGGCAGGCACCUGAGAUGCCUCUAGUGAAGAAAAAGAAGAAGAAAAAGAAGGGUGUCAGCACCCUUUGCGAGGAGCAUGUAGAACCUGAG2000000006ACCACGCUGCCUGCUAGACGG2000000006ACAGAGAAGUCACCCAGCCUCAGGAAGCAGGUGUUUGGCCACUUGGAGUUCCUCAGUGGGGAAAAGAAAAAUAAGAAGUCACCUCUAGCCAUGUCCCAUGCCUCUGGGGUGAAAACCUCCCCAG2000000006ACCCUAGACAGGGUGAGGAGGAAACCAGAGUUGGCAAGAAGCUCAAAAAACACAAGAAGGAAAAAAAGGGGGCCCAGGACCCCACAGCCUUCUCGGUCCAGGACCCUUGGUUCUGUGAGGCCAGGGAGGCCAGGG2000000006AUGUUGGGG2000000006ACACUUGCUCAGUGGGGAAGAAGGAUGAGGA2000000006ACAGGCAGCCUUGGGGCAGAAACGGAAGCGGAAGAGCCCCAGAGAACACAAUGGGAAGGUGAAGAAGAAAAAAAAAAUCCACCAGGAGGGAGAUGCCCUCCCAGGCCACUCCAAGCCCUCCAGGUCCAUGGAGAGCAGCCCUAGGAAAGGAAGUAAAAAGAAGCCAGUCAAAGUUGAGGCUCCGGAAUACA2000000009UCCCCA2000000009UAAGUGAUGACCCUAAGGCCUCCGCAAAGAAAAAGAUGAAGUCCAAAAAGAAGGUAGAGCAGCCAGUCAUCGAGGAGCCAGCUCUGAAAAGGAAGAAAAAGAAGAAGAGGAAAGAGAGUGGGGUAGCAGGAGACCCUUGGAAGGAGGAAACAGACACGGACUUAGAGGUGGUGUUGGAAAAAAAAGGCAACAUGGAUGAGGCGCACAUAG2000000006ACCAGGUGAGGCGAAAGGCCUUGCAAGAAGAGAUCGAUCGCGAGUCAGGCAAAACGGAAGCUUCUGAAACCAGGAAGUGGACGGUAAGUUUGGGGCUAGGGCUCUGCGAGGAGGUGGCACGCUCGGCCUCCCGACGCUUCCCCUCGCCUCCAGCAUGAGGAGUGGAGCAGGAGAACCAAGUAUGUCCAGGCCCCAGAGGCAGCCCUAGCCUGCAGCAGGCUCCCUCCACAGCAGAAUUUGUCCUGAGCUAAUUUCCUUCCUUCUGAAAAGGGCGCUUGCCUCCCUCCUAGAGAGCUGGCCCGGUGAGAUAAGCUGCCUGAACCUUUGUCUCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	159	178	210	222	336	357	481	616	625	656	847	853	1063
Modification Positions	m6A	m6A	Y	Y	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	m6A
Genomic Coordinates	16:19714957:-	16:19714938:-	16:19714906:-	16:19714894:-	16:19714780:-	16:19714759:-	16:19714635:-	16:19714500:-	16:19714491:-	16:19714460:-	16:19714269:-	16:19714263:-	16:19711376:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6AyXsheySjfx aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	bXBqJigD9oV3 oZ9Kp5NX8Hv5 XWZVGdLC6gGJ iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr iezFbUdmY3A6 Yfn77uLS5tv8