General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000566936
Gene ID:	ENSG00000125170
Gene Name:	DOK4
Sequence (UNICHARACTER ENCODING)	GGGAGGGAAGAGGGAGAGAGGAGGAGUGUGGGAAGAGGAAGGAAAAAAGAGAGCGAGACAGCGAGAGGAAGAGAAAGAUGUCACUGUCUCUAAUCUCCCUGUCAUUUUUAUUUCCAGCAGGCGCGGGGCGAAGGAGCUGCUAGAACAAUGCUGAGGCGGGUGAGGUGAGGAGCAGCCCCUCGCGGCAGCCCCGACAGAGUGUCUGGAACAGGUGAUUGGAGGAGCCGGAGACCCAGGCACCUGGGCAUCCUUCCCCUCGCCUCUGCCAGGCCCCGCGCCCCUAAAAGGUGGGAAAACCAUGGCGACCAAUUUCAGUGACAUCGUCAAGCAAGGCUACGUGAAGAUGAAGAGCAGGAAGCUCGGGAUCUACCGGAGGUGCUGGCUGGUGUUCCGGAAAUCCUCCAGCAAGGGGCCCCAGCGGCUGGAGAAGUAUCCAGAUGAGAAGUCGGUGUGCCUCCGGGGCUGCCCCAAGGUGACUGAGAUCAGCAACGUCAAGUGUGUUACGCGGCUCCCCAAGGAGACCAAGCGGCAGGCGGUGGCCAUCAUAUUCACUGAUGACUCGGCACGUACCUUCACCUGCGACUCAGAGCUAGAGGCAGAGGAGUGGUACAAGACACUAUCUGUGGAGUGUCUGGGGUCCCGCCUCAACGACAUCAGUCUGGGAGAACCUGACCUCCUGGCCCCAGGGGUGCAGUGUGAACAGACAGAUCGCUUCAAUGUCUUCCUGCUGCCCUGCCCCAACCUGGACGUGUAUGGCGAGUGCAAGCUGCAGAUCACCCACGAGAACAUCUACCUCUGGGACAUCCACAACCCCCGUGUGAAGCUCGUCUCGUGGCCCCUCUGCUCACUGCGCCGCUAUGGCCGGGAUGCCACACGCUUUACCUUCGAGGCUGGCCGGAUGUGUGAUGCUGGGGAAGGACUCUAUACCUUCCAGACACAAGAGGGGGAGCAGAUUUACCAGCGCGUCCACAGUGCCACCCUGGCCAUCGCAGAGCAGCACAAGCGGGUCCUGCUGGAAAUGGAGAAGAACGUGAGGCUGCUGAACAAGGGCACGGAACAUUACUCGUAUCCCUGCACACCCACGACCAUGCUGCCGCGCAGUGCCUACUGGCACCACAUCACUGGUUCCCAGAACAUCGCCGAAGCCUCCAGCUAUGCUGGUGAGUCGCUUCCAUGCCCCACACCCACCUGCCAGGAGGCUUUGUGGAGGAUGAGGCCUAUUGGGCAGGGGUCUUUUGACCUAGCUCUGAGUUCUGAGCCUGCUUCUGUGCCCACAGGUGAGGGGUAUGGGGCAGCCCAGGCCAGCUCGGAAACAGACCUCCUCAACAGAUUCAUCCUGCUAAAGCCAAAGCCCAGCCAGGGGGACAGCAGUGAGGCCAAGACCCCAPCCCAGUGACCACAGUGCUGGCGAGCACCGAUGACUGCUGGGGGCUGCCUGCUGCGGGGCUGGCUGCAGUGUACCGUGGACAGCCUCAGGGGGCUGUCGGCCAAGAGCCUGGAGAAAGGGAGCAAGCUGCCCCCUCCUUGCCCCCAAGGAUGAGGCUGGЖCUGAGGCAAAGGGCUGGCCACACCACCUGAGCAUGUGUGAGGGGUUGGAGCUACCGUGGGЖCUAUAUACUGUUAAUGAUUUUAAUAUAUAUGGCUUAUGACAUACUCUGUAUCAAUGAGAUCCCCUCACCCUCACCCCAUCCUUCCCCACCAAUACACACAAAUUUUUUAAUCCCAUGACCAGGCCACGGUCAAGGCUGUUUUUGAGUAUGAGUGCAGUCGUGUCCAUCCUCCAUGGCACAGCCCUCCUGCUGCCAGGACCUGCUUGAACUACCAGGGCCACAGGAGGGGGAUAAUCAGAGCUUGAGGCUGGCACUCUGACUGCUGGCUUUUCCCAGACAGCCCAAGGGCCGGAACAGCAGGUGGCUUCUCAGUUCCUCUGGGCCUGGAGUGACACAGGAAGGAUCUGCACUUCCUCUGUGCUGCUUGCCAGCCUUGCAGUUGGAGUUUUAAGCAGAGGUGACAUCUGGUUGACGCCUCAGGUGAAAAUCUGGUUUUAAAAUGUAACUUCUGCACAGGCUCCUUCCUGCUUUGUAGGCUGGGAAGAUGCCCCUGGGGUAGGGGUGCUGAUUACCUCAGCCAUGUGGAGGAAGGCUGGAGCUUGUUCCUGCCCCAGGAAUAGGCCAGGAGGGAAGGCCGCAGCAGGACUGCCGUGGGGAGCACCCCUGCUGCCCCCCUCUCACUGACCAGGGGUGGACAAUGCCCAAGCAGAGGGAGCCCCCUUGCCCUGUUUGGCCACCCUCUGGCCAGCCAAAAGCACUCUGAAACCAAGACCUUCCCAUUUCCUCCUCCCCACAUGGUGCUGAGGCUCCCUGCUGCAAUGCAAUUAAAGCAAUUGAUUUUCUAGUGCUGGUAUUUGUUGACUACCAUGCAGAAGGGCUAUCUUUCUAUUCACGUCAAACUUUUGGUUGUGUGGGGUUUUUUGUUGUUUUUUGGGUUUUGUUUUUUAAUACUPUAGGGUCCUGAUUUGUGGGAЖCAGACCUUCUUGUAAAUAACCACUAUUUGAGUUGUGGCAGGAGGAUGAUAAAGCACGCGGCCCCUCCCAAAGGAGCCCUUGAGCUAGGGAGGUGGUGCAGUCAGCCUCGCUCUCAACGUGACCCGGGGAAUGACCACCCAGAGGGAUGAGCUAGCCUGUAGAGGGGAACUGGGGUCCAAAGGUCUUUGGGGAGGGAGGCAGAGCUGGCUGGCUCAGCUAAGUGGCACGAUGACGCAUGAAGGAGAUUAUGUUGUGCUCUPUAUUGCCAAAAAUAAACACUUUUAAAAAGACAACUUCUGUUAAUCAAUAAAUAUCCUUUCCUUUCUGUA
Sequence (SHORT NAMES ENCODING)	GGGAGGGAAGAGGGAGAGAGGAGGAGUGUGGGAAGAGGAAGGAAAAAAGAGAGCGAGACAGCGAGAGGAAGAGAAAGAUGUCACUGUCUCUAAUCUCCCUGUCAUUUUUAUUUCCAGCAGGCGCGGGGCGAAGGAGCUGCUAGAACAAUGCUGAGGCGGGUGAGGUGAGGAGCAGCCCCUCGCGGCAGCCCCGACAGAGUGUCUGGAACAGGUGAUUGGAGGAGCCGGAGACCCAGGCACCUGGGCAUCCUUCCCCUCGCCUCUGCCAGGCCCCGCGCCCCUAAAAGGUGGGAAAACCAUGGCGACCAAUUUCAGUGACAUCGUCAAGCAAGGCUACGUGAAGAUGAAGAGCAGGAAGCUCGGGAUCUACCGGAGGUGCUGGCUGGUGUUCCGGAAAUCCUCCAGCAAGGGGCCCCAGCGGCUGGAGAAGUAUCCAGAUGAGAAGUCGGUGUGCCUCCGGGGCUGCCCCAAGGUGACUGAGAUCAGCAACGUCAAGUGUGUUACGCGGCUCCCCAAGGAGACCAAGCGGCAGGCGGUGGCCAUCAUAUUCACUGAUGACUCGGCACGUACCUUCACCUGCGACUCAGAGCUAGAGGCAGAGGAGUGGUACAAGACACUAUCUGUGGAGUGUCUGGGGUCCCGCCUCAACGACAUCAGUCUGGGAGAACCUGACCUCCUGGCCCCAGGGGUGCAGUGUGAACAGACAGAUCGCUUCAAUGUCUUCCUGCUGCCCUGCCCCAACCUGGACGUGUAUGGCGAGUGCAAGCUGCAGAUCACCCACGAGAACAUCUACCUCUGGGACAUCCACAACCCCCGUGUGAAGCUCGUCUCGUGGCCCCUCUGCUCACUGCGCCGCUAUGGCCGGGAUGCCACACGCUUUACCUUCGAGGCUGGCCGGAUGUGUGAUGCUGGGGAAGGACUCUAUACCUUCCAGACACAAGAGGGGGAGCAGAUUUACCAGCGCGUCCACAGUGCCACCCUGGCCAUCGCAGAGCAGCACAAGCGGGUCCUGCUGGAAAUGGAGAAGAACGUGAGGCUGCUGAACAAGGGCACGGAACAUUACUCGUAUCCCUGCACACCCACGACCAUGCUGCCGCGCAGUGCCUACUGGCACCACAUCACUGGUUCCCAGAACAUCGCCGAAGCCUCCAGCUAUGCUGGUGAGUCGCUUCCAUGCCCCACACCCACCUGCCAGGAGGCUUUGUGGAGGAUGAGGCCUAUUGGGCAGGGGUCUUUUGACCUAGCUCUGAGUUCUGAGCCUGCUUCUGUGCCCACAGGUGAGGGGUAUGGGGCAGCCCAGGCCAGCUCGGAAACAGACCUCCUCAACAGAUUCAUCCUGCUAAAGCCAAAGCCCAGCCAGGGGGACAGCAGUGAGGCCAAGACCCCAYCCCAGUGACCACAGUGCUGGCGAGCACCGAUGACUGCUGGGGGCUGCCUGCUGCGGGGCUGGCUGCAGUGUACCGUGGACAGCCUCAGGGGGCUGUCGGCCAAGAGCCUGGAGAAAGGGAGCAAGCUGCCCCCUCCUUGCCCCCAAGGAUGAGGCUGGm6ACUGAGGCAAAGGGCUGGCCACACCACCUGAGCAUGUGUGAGGGGUUGGAGCUACCGUGGGm6ACUAUAUACUGUUAAUGAUUUUAAUAUAUAUGGCUUAUGACAUACUCUGUAUCAAUGAGAUCCCCUCACCCUCACCCCAUCCUUCCCCACCAAUACACACAAAUUUUUUAAUCCCAUGACCAGGCCACGGUCAAGGCUGUUUUUGAGUAUGAGUGCAGUCGUGUCCAUCCUCCAUGGCACAGCCCUCCUGCUGCCAGGACCUGCUUGAACUACCAGGGCCACAGGAGGGGGAUAAUCAGAGCUUGAGGCUGGCACUCUGACUGCUGGCUUUUCCCAGACAGCCCAAGGGCCGGAACAGCAGGUGGCUUCUCAGUUCCUCUGGGCCUGGAGUGACACAGGAAGGAUCUGCACUUCCUCUGUGCUGCUUGCCAGCCUUGCAGUUGGAGUUUUAAGCAGAGGUGACAUCUGGUUGACGCCUCAGGUGAAAAUCUGGUUUUAAAAUGUAACUUCUGCACAGGCUCCUUCCUGCUUUGUAGGCUGGGAAGAUGCCCCUGGGGUAGGGGUGCUGAUUACCUCAGCCAUGUGGAGGAAGGCUGGAGCUUGUUCCUGCCCCAGGAAUAGGCCAGGAGGGAAGGCCGCAGCAGGACUGCCGUGGGGAGCACCCCUGCUGCCCCCCUCUCACUGACCAGGGGUGGACAAUGCCCAAGCAGAGGGAGCCCCCUUGCCCUGUUUGGCCACCCUCUGGCCAGCCAAAAGCACUCUGAAACCAAGACCUUCCCAUUUCCUCCUCCCCACAUGGUGCUGAGGCUCCCUGCUGCAAUGCAAUUAAAGCAAUUGAUUUUCUAGUGCUGGUAUUUGUUGACUACCAUGCAGAAGGGCUAUCUUUCUAUUCACGUCAAACUUUUGGUUGUGUGGGGUUUUUUGUUGUUUUUUGGGUUUUGUUUUUUAAUACUYUAGGGUCCUGAUUUGUGGGAm6ACAGACCUUCUUGUAAAUAACCACUAUUUGAGUUGUGGCAGGAGGAUGAUAAAGCACGCGGCCCCUCCCAAAGGAGCCCUUGAGCUAGGGAGGUGGUGCAGUCAGCCUCGCUCUCAACGUGACCCGGGGAAUGACCACCCAGAGGGAUGAGCUAGCCUGUAGAGGGGAACUGGGGUCCAAAGGUCUUUGGGGAGGGAGGCAGAGCUGGCUGGCUCAGCUAAGUGGCACGAUGACGCAUGAAGGAGAUUAUGUUGUGCUCUYUAUUGCCAAAAAUAAACACUUUUAAAAAGACAACUUCUGUUAAUCAAUAAAUAUCCUUUCCUUUCUGUA
Sequence (MODOMICS CODE ENCODING)	GGGAGGGAAGAGGGAGAGAGGAGGAGUGUGGGAAGAGGAAGGAAAAAAGAGAGCGAGACAGCGAGAGGAAGAGAAAGAUGUCACUGUCUCUAAUCUCCCUGUCAUUUUUAUUUCCAGCAGGCGCGGGGCGAAGGAGCUGCUAGAACAAUGCUGAGGCGGGUGAGGUGAGGAGCAGCCCCUCGCGGCAGCCCCGACAGAGUGUCUGGAACAGGUGAUUGGAGGAGCCGGAGACCCAGGCACCUGGGCAUCCUUCCCCUCGCCUCUGCCAGGCCCCGCGCCCCUAAAAGGUGGGAAAACCAUGGCGACCAAUUUCAGUGACAUCGUCAAGCAAGGCUACGUGAAGAUGAAGAGCAGGAAGCUCGGGAUCUACCGGAGGUGCUGGCUGGUGUUCCGGAAAUCCUCCAGCAAGGGGCCCCAGCGGCUGGAGAAGUAUCCAGAUGAGAAGUCGGUGUGCCUCCGGGGCUGCCCCAAGGUGACUGAGAUCAGCAACGUCAAGUGUGUUACGCGGCUCCCCAAGGAGACCAAGCGGCAGGCGGUGGCCAUCAUAUUCACUGAUGACUCGGCACGUACCUUCACCUGCGACUCAGAGCUAGAGGCAGAGGAGUGGUACAAGACACUAUCUGUGGAGUGUCUGGGGUCCCGCCUCAACGACAUCAGUCUGGGAGAACCUGACCUCCUGGCCCCAGGGGUGCAGUGUGAACAGACAGAUCGCUUCAAUGUCUUCCUGCUGCCCUGCCCCAACCUGGACGUGUAUGGCGAGUGCAAGCUGCAGAUCACCCACGAGAACAUCUACCUCUGGGACAUCCACAACCCCCGUGUGAAGCUCGUCUCGUGGCCCCUCUGCUCACUGCGCCGCUAUGGCCGGGAUGCCACACGCUUUACCUUCGAGGCUGGCCGGAUGUGUGAUGCUGGGGAAGGACUCUAUACCUUCCAGACACAAGAGGGGGAGCAGAUUUACCAGCGCGUCCACAGUGCCACCCUGGCCAUCGCAGAGCAGCACAAGCGGGUCCUGCUGGAAAUGGAGAAGAACGUGAGGCUGCUGAACAAGGGCACGGAACAUUACUCGUAUCCCUGCACACCCACGACCAUGCUGCCGCGCAGUGCCUACUGGCACCACAUCACUGGUUCCCAGAACAUCGCCGAAGCCUCCAGCUAUGCUGGUGAGUCGCUUCCAUGCCCCACACCCACCUGCCAGGAGGCUUUGUGGAGGAUGAGGCCUAUUGGGCAGGGGUCUUUUGACCUAGCUCUGAGUUCUGAGCCUGCUUCUGUGCCCACAGGUGAGGGGUAUGGGGCAGCCCAGGCCAGCUCGGAAACAGACCUCCUCAACAGAUUCAUCCUGCUAAAGCCAAAGCCCAGCCAGGGGGACAGCAGUGAGGCCAAGACCCCA2000000009UCCCAGUGACCACAGUGCUGGCGAGCACCGAUGACUGCUGGGGGCUGCCUGCUGCGGGGCUGGCUGCAGUGUACCGUGGACAGCCUCAGGGGGCUGUCGGCCAAGAGCCUGGAGAAAGGGAGCAAGCUGCCCCCUCCUUGCCCCCAAGGAUGAGGCUGG2000000006ACUGAGGCAAAGGGCUGGCCACACCACCUGAGCAUGUGUGAGGGGUUGGAGCUACCGUGGG2000000006ACUAUAUACUGUUAAUGAUUUUAAUAUAUAUGGCUUAUGACAUACUCUGUAUCAAUGAGAUCCCCUCACCCUCACCCCAUCCUUCCCCACCAAUACACACAAAUUUUUUAAUCCCAUGACCAGGCCACGGUCAAGGCUGUUUUUGAGUAUGAGUGCAGUCGUGUCCAUCCUCCAUGGCACAGCCCUCCUGCUGCCAGGACCUGCUUGAACUACCAGGGCCACAGGAGGGGGAUAAUCAGAGCUUGAGGCUGGCACUCUGACUGCUGGCUUUUCCCAGACAGCCCAAGGGCCGGAACAGCAGGUGGCUUCUCAGUUCCUCUGGGCCUGGAGUGACACAGGAAGGAUCUGCACUUCCUCUGUGCUGCUUGCCAGCCUUGCAGUUGGAGUUUUAAGCAGAGGUGACAUCUGGUUGACGCCUCAGGUGAAAAUCUGGUUUUAAAAUGUAACUUCUGCACAGGCUCCUUCCUGCUUUGUAGGCUGGGAAGAUGCCCCUGGGGUAGGGGUGCUGAUUACCUCAGCCAUGUGGAGGAAGGCUGGAGCUUGUUCCUGCCCCAGGAAUAGGCCAGGAGGGAAGGCCGCAGCAGGACUGCCGUGGGGAGCACCCCUGCUGCCCCCCUCUCACUGACCAGGGGUGGACAAUGCCCAAGCAGAGGGAGCCCCCUUGCCCUGUUUGGCCACCCUCUGGCCAGCCAAAAGCACUCUGAAACCAAGACCUUCCCAUUUCCUCCUCCCCACAUGGUGCUGAGGCUCCCUGCUGCAAUGCAAUUAAAGCAAUUGAUUUUCUAGUGCUGGUAUUUGUUGACUACCAUGCAGAAGGGCUAUCUUUCUAUUCACGUCAAACUUUUGGUUGUGUGGGGUUUUUUGUUGUUUUUUGGGUUUUGUUUUUUAAUACU2000000009UUAGGGUCCUGAUUUGUGGGA2000000006ACAGACCUUCUUGUAAAUAACCACUAUUUGAGUUGUGGCAGGAGGAUGAUAAAGCACGCGGCCCCUCCCAAAGGAGCCCUUGAGCUAGGGAGGUGGUGCAGUCAGCCUCGCUCUCAACGUGACCCGGGGAAUGACCACCCAGAGGGAUGAGCUAGCCUGUAGAGGGGAACUGGGGUCCAAAGGUCUUUGGGGAGGGAGGCAGAGCUGGCUGGCUCAGCUAAGUGGCACGAUGACGCAUGAAGGAGAUUAUGUUGUGCUCU2000000009UUAUUGCCAAAAAUAAACACUUUUAAAAAGACAACUUCUGUUAAUCAAUAAAUAUCCUUUCCUUUCUGUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1388	1547	1608	2501	2522	2782
Modification Positions	Y	m6A	m6A	Y	m6A	Y
Genomic Coordinates	16:57473385:-	16:57473226:-	16:57473165:-	16:57472272:-	16:57472251:-	16:57471991:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 f6YSioLdAWpr	5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 nfCHyrYzE6fB Lny8GcCeVGc9 bXBqJigD9oV3	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 BsCW7emuRX7M Lny8GcCeVGc9 UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3	bXBqJigD9oV3 dknfVe6BK8aP	bXBqJigD9oV3 dknfVe6BK8aP	bXBqJigD9oV3 dknfVe6BK8aP