Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000568500
Gene ID: ENSG00000261840
Gene Name: None
Sequence (UNICHARACTER ENCODING) GUGCGCGGCUGGAGGCGGAGCGAGCCGGCUGCGCGCACGGCCCAGGGGCUCCCGCCAGAACCCGAGCCCACGCACACAAGGGUCGCGGGGCUGGGAAGCUCGUCAPCCAAGCCCGUCAGGGAGCCCCCCCAUCACCCGACCGCGAAAGGCUGAGAGAAGGGAGGGUUCGUGCCACCAGGUCCUGGUCCCCCGGCUAGAUGUGGUGGGCGCGCGCCCCGACUACUCGUCCCACGCCCCCCUUCCUCUUCCCGCGCGCCCCUGAGGGGUGACUGGGUUGGUGGGCGGGCAGGAGCGCACCUGGGUCCGUCCUCUCAGGGCUCGCUCGCUCGCUCGCUCGCUCAGGCACGCGUGCGCAGAAGGGCGGGAAGGGAGAGGAGACACGCCGGGGCCCAGCGCCGGCCGGCCUGACCCCCUCAGUCUGUCUCUAUGGGCGCGCGCCGACAGCCUCGCGCACCGGCCCCGGGGCCCCGGCUGAGGGUGCGCGCGCAGCACCCCGGGAAGGUGGGGGGGAGGCGGUGGCGGAAAGAUGCGCGCGCAGUCAGCCGUCAUGGGAGGGGGAACUGUGGGGCGUUCGCCAUCUUGUCUCCCUCUCCUUACCUGCGUCCUCGGGGGCGUGCGCACCACCCCCCCUCCCGCCUAGGAGGGGGGAGGGCCCCCUCUUGGCCACCGCCUUCGCGGCCUUUAAACUCCCCUGGAGACUGCGGCUACUGCCACCGCCUUGCCUCCACUGCCUCUUCGCGCAGCACACAGAUGCGGACGGUGGGUGGGAAAAAGGGCAGACGCUACUCCCAGCGAACCGCCGCUGCCGCUCCCGAGGCCUCACCAAAAUGGCCGCCGCCGUCUCGGCCGCCACCACCACCACUACCACCACCACUCGCUCGGAAUCGCUAUCGCCGGCGCGGCCCGUCUUCUCGCGAGAGACAAUCACCCAGUAAGCUGCAGCAAGUUAGCAGUGGAACCUGGGCCUCCCGAUUCCCAUGGCAGCCCACUUCUGUAGCGCUGCUUCGUUUUACGCGAGGAUGGUUUCCUGAUAGCUUUCAAЖCACCUUUGCCAUCUCUUCGCAAACUUUCUAGAUUAAGAAUCCCUUUGAGAAUCUGAUACCUPUACCCCAGAAUAGAACAAUAAAUAACAGCUACCUUCUA
Sequence (SHORT NAMES ENCODING) GUGCGCGGCUGGAGGCGGAGCGAGCCGGCUGCGCGCACGGCCCAGGGGCUCCCGCCAGAACCCGAGCCCACGCACACAAGGGUCGCGGGGCUGGGAAGCUCGUCAYCCAAGCCCGUCAGGGAGCCCCCCCAUCACCCGACCGCGAAAGGCUGAGAGAAGGGAGGGUUCGUGCCACCAGGUCCUGGUCCCCCGGCUAGAUGUGGUGGGCGCGCGCCCCGACUACUCGUCCCACGCCCCCCUUCCUCUUCCCGCGCGCCCCUGAGGGGUGACUGGGUUGGUGGGCGGGCAGGAGCGCACCUGGGUCCGUCCUCUCAGGGCUCGCUCGCUCGCUCGCUCGCUCAGGCACGCGUGCGCAGAAGGGCGGGAAGGGAGAGGAGACACGCCGGGGCCCAGCGCCGGCCGGCCUGACCCCCUCAGUCUGUCUCUAUGGGCGCGCGCCGACAGCCUCGCGCACCGGCCCCGGGGCCCCGGCUGAGGGUGCGCGCGCAGCACCCCGGGAAGGUGGGGGGGAGGCGGUGGCGGAAAGAUGCGCGCGCAGUCAGCCGUCAUGGGAGGGGGAACUGUGGGGCGUUCGCCAUCUUGUCUCCCUCUCCUUACCUGCGUCCUCGGGGGCGUGCGCACCACCCCCCCUCCCGCCUAGGAGGGGGGAGGGCCCCCUCUUGGCCACCGCCUUCGCGGCCUUUAAACUCCCCUGGAGACUGCGGCUACUGCCACCGCCUUGCCUCCACUGCCUCUUCGCGCAGCACACAGAUGCGGACGGUGGGUGGGAAAAAGGGCAGACGCUACUCCCAGCGAACCGCCGCUGCCGCUCCCGAGGCCUCACCAAAAUGGCCGCCGCCGUCUCGGCCGCCACCACCACCACUACCACCACCACUCGCUCGGAAUCGCUAUCGCCGGCGCGGCCCGUCUUCUCGCGAGAGACAAUCACCCAGUAAGCUGCAGCAAGUUAGCAGUGGAACCUGGGCCUCCCGAUUCCCAUGGCAGCCCACUUCUGUAGCGCUGCUUCGUUUUACGCGAGGAUGGUUUCCUGAUAGCUUUCAAm6ACACCUUUGCCAUCUCUUCGCAAACUUUCUAGAUUAAGAAUCCCUUUGAGAAUCUGAUACCUYUACCCCAGAAUAGAACAAUAAAUAACAGCUACCUUCUA
Sequence (MODOMICS CODE ENCODING) GUGCGCGGCUGGAGGCGGAGCGAGCCGGCUGCGCGCACGGCCCAGGGGCUCCCGCCAGAACCCGAGCCCACGCACACAAGGGUCGCGGGGCUGGGAAGCUCGUCA2000000009UCCAAGCCCGUCAGGGAGCCCCCCCAUCACCCGACCGCGAAAGGCUGAGAGAAGGGAGGGUUCGUGCCACCAGGUCCUGGUCCCCCGGCUAGAUGUGGUGGGCGCGCGCCCCGACUACUCGUCCCACGCCCCCCUUCCUCUUCCCGCGCGCCCCUGAGGGGUGACUGGGUUGGUGGGCGGGCAGGAGCGCACCUGGGUCCGUCCUCUCAGGGCUCGCUCGCUCGCUCGCUCGCUCAGGCACGCGUGCGCAGAAGGGCGGGAAGGGAGAGGAGACACGCCGGGGCCCAGCGCCGGCCGGCCUGACCCCCUCAGUCUGUCUCUAUGGGCGCGCGCCGACAGCCUCGCGCACCGGCCCCGGGGCCCCGGCUGAGGGUGCGCGCGCAGCACCCCGGGAAGGUGGGGGGGAGGCGGUGGCGGAAAGAUGCGCGCGCAGUCAGCCGUCAUGGGAGGGGGAACUGUGGGGCGUUCGCCAUCUUGUCUCCCUCUCCUUACCUGCGUCCUCGGGGGCGUGCGCACCACCCCCCCUCCCGCCUAGGAGGGGGGAGGGCCCCCUCUUGGCCACCGCCUUCGCGGCCUUUAAACUCCCCUGGAGACUGCGGCUACUGCCACCGCCUUGCCUCCACUGCCUCUUCGCGCAGCACACAGAUGCGGACGGUGGGUGGGAAAAAGGGCAGACGCUACUCCCAGCGAACCGCCGCUGCCGCUCCCGAGGCCUCACCAAAAUGGCCGCCGCCGUCUCGGCCGCCACCACCACCACUACCACCACCACUCGCUCGGAAUCGCUAUCGCCGGCGCGGCCCGUCUUCUCGCGAGAGACAAUCACCCAGUAAGCUGCAGCAAGUUAGCAGUGGAACCUGGGCCUCCCGAUUCCCAUGGCAGCCCACUUCUGUAGCGCUGCUUCGUUUUACGCGAGGAUGGUUUCCUGAUAGCUUUCAA2000000006ACACCUUUGCCAUCUCUUCGCAAACUUUCUAGAUUAAGAAUCCCUUUGAGAAUCUGAUACCU2000000009UUACCCCAGAAUAGAACAAUAAAUAACAGCUACCUUCUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 106 1042 1104
Modification Positions Y m6A Y
Genomic Coordinates 16:30698953:- 16:30697813:- 16:30697751:-
Level of Experimental Evidence 3 3 3
Level of Experimental Reliability 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8