Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000393080
Gene ID: ENSG00000196136
Gene Name: SERPINA3
Sequence (UNICHARACTER ENCODING) AAAAUCCACUACUCCAGACAGACGGCUUUGGAAUCCACCAGCUACAUCCAGCUCCCUGAGAGUUGAGAAUGGAGAGAAUGUUACCUCUCCUGGCUCUGGGGCUCUUGGCGGCUGGGUUCUGCCCUGCUGUCCUCUGCCACCCUAACAGCCCACUUGACGAGGAGAAUCUGACCCAGGAGAACCAAGACCGAGGGACACACGUGGACCUCGGAUUAGCCUCCGCCAACGUGGACUUCGCUUUCAGCCUGUACAAGCAGUUAGUCCUGAAGGCCCCUGAUAAGAAUGUCAUCUUCUCCCCACUGAGCAUCUCCACCGCCUUGGCCUUCCUGUCUCUGGGGGCCCAUAAUACCACCCUGACAGAGAUUCUCAAAGGCCUCAAGUUCAACCUCACGGAGACUUCUGAGGCAGAAAUUCACCAGAGCUUCCAGCACCUCCUGCGCACCCUCAAUCAGUCCAGCGAUGAGCUGCAGCUGAGUAUGGGAAAUGCCAUGUUUGUCAAAGAGCAACUCAGUCUGCUGGACAGGUUCACGGAGGAUGCCAAGAGGCUGUAUGGCUCCGAGGCCUUUGCCACUGACUUUCAGGACUCAGCUGCAGCUAAGAAGCUCAUCAACGACUACGUGAAGAAUGGAACUAGGGGGAAAAUCACAGAUCUGAUCAAGGACCUUGACUCGCAGACAAUGAUGGUCCUGGUGAAUUACAUCUUCUUUAAAGCBAAAUGGGAGAUGCCCUUUGACCCCCAAGAUACUCAUCAGUCAAGGUUCUACUUGAGCAAGAAAAAGUGGGUAAUGGUGCCCAUGAUGAGUUUGCAUCACCUGACUAUACCUUACUUCCGGGACGAGGAGCUGUCCUGCACCGUGGUGGAGCUGAAGUACACAGGCAAUGCCAGCGCACUCUUCAUCCUCCCUGAUCAAGACAAGAUGGAGGAAGUGGAAGCCAUGCUGCUCCCAGAGACCCUGAAGCGGUGGAGAGACUCUCUGGAGUUCAGAGAGAUAGGUGAGCUCUACCUGCCAAAGUUUUCCAUCUCGAGGGACUAUAACCUGAACGACAUACUUCUCCAGCUGGGCAUUGAGGAAGCCUUCACCAGCAAGGCUGACCUGUCAGGGAUCACAGGGGCCAGGAACCUAGCAGUCUCCCAGGUGGUCCAUAAGGCUGUGCUUGAUGUAUUUGAGGAGGGCACAGAAGCAUCUGCUGCCACAGCAGUCAAAAUCACCCUCCUUUCUGCAUUAGUGGAGACAAGGACCAUUGUGCGUUUCAACAGGCCCUUCCUGAUGAUCAUUGUCCCUACAGACACCCAGAACAUCUUCUUCAUGAGCAAAGUCACCAAUCCCAAGCAAGCCUAGAGCUUGCCAUCAAGCAGUGGGGCUCUCAGUAAGGAACUUGGAAUGCAAGCUGGAUGCCUGGGUCUCUGGGCACAGCCUGGCCCCUGUGCACCGAGUGGCCAUGGCAUGUGUGGCCCUGUCUGCUUAUCCUUGGAAGGUGACAGCGAUUCCCUGUGUAGCUCUCACAUGCACAGGGGCCCAUGGACUCUUCAGUCUGGAGGGUCCUGGGCCUCCUGACAGCAAUAAAUAAUUUCGUUGGACA
Sequence (SHORT NAMES ENCODING) AAAAUCCACUACUCCAGACAGACGGCUUUGGAAUCCACCAGCUACAUCCAGCUCCCUGAGAGUUGAGAAUGGAGAGAAUGUUACCUCUCCUGGCUCUGGGGCUCUUGGCGGCUGGGUUCUGCCCUGCUGUCCUCUGCCACCCUAACAGCCCACUUGACGAGGAGAAUCUGACCCAGGAGAACCAAGACCGAGGGACACACGUGGACCUCGGAUUAGCCUCCGCCAACGUGGACUUCGCUUUCAGCCUGUACAAGCAGUUAGUCCUGAAGGCCCCUGAUAAGAAUGUCAUCUUCUCCCCACUGAGCAUCUCCACCGCCUUGGCCUUCCUGUCUCUGGGGGCCCAUAAUACCACCCUGACAGAGAUUCUCAAAGGCCUCAAGUUCAACCUCACGGAGACUUCUGAGGCAGAAAUUCACCAGAGCUUCCAGCACCUCCUGCGCACCCUCAAUCAGUCCAGCGAUGAGCUGCAGCUGAGUAUGGGAAAUGCCAUGUUUGUCAAAGAGCAACUCAGUCUGCUGGACAGGUUCACGGAGGAUGCCAAGAGGCUGUAUGGCUCCGAGGCCUUUGCCACUGACUUUCAGGACUCAGCUGCAGCUAAGAAGCUCAUCAACGACUACGUGAAGAAUGGAACUAGGGGGAAAAUCACAGAUCUGAUCAAGGACCUUGACUCGCAGACAAUGAUGGUCCUGGUGAAUUACAUCUUCUUUAAAGCCmAAAUGGGAGAUGCCCUUUGACCCCCAAGAUACUCAUCAGUCAAGGUUCUACUUGAGCAAGAAAAAGUGGGUAAUGGUGCCCAUGAUGAGUUUGCAUCACCUGACUAUACCUUACUUCCGGGACGAGGAGCUGUCCUGCACCGUGGUGGAGCUGAAGUACACAGGCAAUGCCAGCGCACUCUUCAUCCUCCCUGAUCAAGACAAGAUGGAGGAAGUGGAAGCCAUGCUGCUCCCAGAGACCCUGAAGCGGUGGAGAGACUCUCUGGAGUUCAGAGAGAUAGGUGAGCUCUACCUGCCAAAGUUUUCCAUCUCGAGGGACUAUAACCUGAACGACAUACUUCUCCAGCUGGGCAUUGAGGAAGCCUUCACCAGCAAGGCUGACCUGUCAGGGAUCACAGGGGCCAGGAACCUAGCAGUCUCCCAGGUGGUCCAUAAGGCUGUGCUUGAUGUAUUUGAGGAGGGCACAGAAGCAUCUGCUGCCACAGCAGUCAAAAUCACCCUCCUUUCUGCAUUAGUGGAGACAAGGACCAUUGUGCGUUUCAACAGGCCCUUCCUGAUGAUCAUUGUCCCUACAGACACCCAGAACAUCUUCUUCAUGAGCAAAGUCACCAAUCCCAAGCAAGCCUAGAGCUUGCCAUCAAGCAGUGGGGCUCUCAGUAAGGAACUUGGAAUGCAAGCUGGAUGCCUGGGUCUCUGGGCACAGCCUGGCCCCUGUGCACCGAGUGGCCAUGGCAUGUGUGGCCCUGUCUGCUUAUCCUUGGAAGGUGACAGCGAUUCCCUGUGUAGCUCUCACAUGCACAGGGGCCCAUGGACUCUUCAGUCUGGAGGGUCCUGGGCCUCCUGACAGCAAUAAAUAAUUUCGUUGGACA
Sequence (MODOMICS CODE ENCODING) AAAAUCCACUACUCCAGACAGACGGCUUUGGAAUCCACCAGCUACAUCCAGCUCCCUGAGAGUUGAGAAUGGAGAGAAUGUUACCUCUCCUGGCUCUGGGGCUCUUGGCGGCUGGGUUCUGCCCUGCUGUCCUCUGCCACCCUAACAGCCCACUUGACGAGGAGAAUCUGACCCAGGAGAACCAAGACCGAGGGACACACGUGGACCUCGGAUUAGCCUCCGCCAACGUGGACUUCGCUUUCAGCCUGUACAAGCAGUUAGUCCUGAAGGCCCCUGAUAAGAAUGUCAUCUUCUCCCCACUGAGCAUCUCCACCGCCUUGGCCUUCCUGUCUCUGGGGGCCCAUAAUACCACCCUGACAGAGAUUCUCAAAGGCCUCAAGUUCAACCUCACGGAGACUUCUGAGGCAGAAAUUCACCAGAGCUUCCAGCACCUCCUGCGCACCCUCAAUCAGUCCAGCGAUGAGCUGCAGCUGAGUAUGGGAAAUGCCAUGUUUGUCAAAGAGCAACUCAGUCUGCUGGACAGGUUCACGGAGGAUGCCAAGAGGCUGUAUGGCUCCGAGGCCUUUGCCACUGACUUUCAGGACUCAGCUGCAGCUAAGAAGCUCAUCAACGACUACGUGAAGAAUGGAACUAGGGGGAAAAUCACAGAUCUGAUCAAGGACCUUGACUCGCAGACAAUGAUGGUCCUGGUGAAUUACAUCUUCUUUAAAGC2000000090CAAAUGGGAGAUGCCCUUUGACCCCCAAGAUACUCAUCAGUCAAGGUUCUACUUGAGCAAGAAAAAGUGGGUAAUGGUGCCCAUGAUGAGUUUGCAUCACCUGACUAUACCUUACUUCCGGGACGAGGAGCUGUCCUGCACCGUGGUGGAGCUGAAGUACACAGGCAAUGCCAGCGCACUCUUCAUCCUCCCUGAUCAAGACAAGAUGGAGGAAGUGGAAGCCAUGCUGCUCCCAGAGACCCUGAAGCGGUGGAGAGACUCUCUGGAGUUCAGAGAGAUAGGUGAGCUCUACCUGCCAAAGUUUUCCAUCUCGAGGGACUAUAACCUGAACGACAUACUUCUCCAGCUGGGCAUUGAGGAAGCCUUCACCAGCAAGGCUGACCUGUCAGGGAUCACAGGGGCCAGGAACCUAGCAGUCUCCCAGGUGGUCCAUAAGGCUGUGCUUGAUGUAUUUGAGGAGGGCACAGAAGCAUCUGCUGCCACAGCAGUCAAAAUCACCCUCCUUUCUGCAUUAGUGGAGACAAGGACCAUUGUGCGUUUCAACAGGCCCUUCCUGAUGAUCAUUGUCCCUACAGACACCCAGAACAUCUUCUUCAUGAGCAAAGUCACCAAUCCCAAGCAAGCCUAGAGCUUGCCAUCAAGCAGUGGGGCUCUCAGUAAGGAACUUGGAAUGCAAGCUGGAUGCCUGGGUCUCUGGGCACAGCCUGGCCCCUGUGCACCGAGUGGCCAUGGCAUGUGUGGCCCUGUCUGCUUAUCCUUGGAAGGUGACAGCGAUUCCCUGUGUAGCUCUCACAUGCACAGGGGCCCAUGGACUCUUCAGUCUGGAGGGUCCUGGGCCUCCUGACAGCAAUAAAUAAUUUCGUUGGACA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 713
Modification Positions Cm
Genomic Coordinates 14:94619196:+
Level of Experimental Evidence 3
Level of Experimental Reliability 3
Source Sci-ModoM
EUFIDs YkSG92k4EHDM
YkSG92k4EHDM
YkSG92k4EHDM
YkSG92k4EHDM