Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000555220
Gene ID: ENSG00000089775
Gene Name: ZBTB25
Sequence (UNICHARACTER ENCODING) AAAGAAGGUAACUAAUUUGGGAACUAGUCUCCGUAGGGGCUUCGCCUCCGACUCAGGGAGGCCGCACGCCCGGGACCUGACGCGCCGGCAACAAGCAGGCGGCCUGGCAGCCGCCCGUCACCGGGUCCUCGCAGCGCGUCCGCCGCGCUCCGGCUCCCCGCACGGAUCGGCGCCCCUCCGGCCCCGCACUCCGCCAGGCCCGCGGCCCGUCGCCCUCCGGCCUGGGCCAAAGUUGCGCAAAUAGCCCCACAACUGGCAAAUACUUACCGGCCGCAACAGGAACCAGAGCUGCGGAGAUUUUAGGGAGUUUAAGGCAAAUCAGCCGCGGGAAAGGCGGGCGAAGGCGAAGGGGCCGCGAGCUGCAGUGGCGGCGGCGCGCGGCGCUCGGCGCUCGGGCUGGGCUGCGCGGAGAGGCUCUGGCUCUGCCAGGGACUGUGCUGCAACAAAGGACUUCCGCUGCCGCACAGCCGCGCCUGCCGCACCGCACUGAGCCGGCCCCGCUUACGCGGCGACUCCGGGUCUGCCCACCAGUUCGCUGCGGCGUCCGCCAGCCUUCCCCUCCCUCUCGCCCGCCCACCCACUCUGCCGCUGGCUGCUAGGGGCACCCGCGGUCGCCUGUUUGUUGCAACAAGUUUCUGCGUCGAGCUCCGAGGAGGCUGGCGCAACCCGCACCGCGGGGGCCGUCGCGGCGGCGGCGGCUUGACCACCCCUCUUGCCCCUCUCAAGGAACCACAAUGGACACUGCCAGCCAUAGCCUUGUUCUUCUCCAGCAGCUGAACAUGCAGCGAGAAUUUGGUUUUCUGUGUGAUUGCACAGUUGCAAUUGGAGAUGUUUACUUCAAAGCCCACAGAGCAGUGCUUGCUGCUUUUUCUAACUAUUUCAAGAUGAUAUUUAUUCACCAAACAAGACAGCAAAUCACCCACCUUGAGGUCAUAAAGGAGCUGGAAGCUGCUGGGUGCUUGUGCUGCUCUCUGGACGGCCUGAGCCAGGGCUAAGGCACCCUUGCCCCCUUCUGCCCAGUGAGUGCACUUCACGGCAUCAAAAGCCCCAUGUUCUCUGGAAAGGCGGCUGAUGAGGUCCAGCUCAGЖCUCUGUAUCCGUCCUAUAAAGGAAGCAUUUCAUAUCAAAGCAUGGAAAAUGGCUGGAGAGACAGAAUUGUCUUCUUUUUGCCAUUAAACCUCAUGUGAAUUACCCACUGAUAAACGAЖCACUAACCAAGAAAUUUGGCCUGGGUUUGAAUCUCAGCUCCGAAACUUACUAGCUGGUGЖCUUUUGGCCAGUUACCUAAUCUUUAUGUGCCUCAAUUUCCACCCUGGUAAUACGCGAAUAAUCACAGCACUUAUUUCAUUGGGЖCGUUAUGAGЖCUCAGAUGGUAAAUCCAUGUAAAAUACUUGGAAAAUUCCCAGCACUCCAGAAGGAAUCAGUAAAUACUAGCAUUUAAGAA
Sequence (SHORT NAMES ENCODING) AAAGAAGGUAACUAAUUUGGGAACUAGUCUCCGUAGGGGCUUCGCCUCCGACUCAGGGAGGCCGCACGCCCGGGACCUGACGCGCCGGCAACAAGCAGGCGGCCUGGCAGCCGCCCGUCACCGGGUCCUCGCAGCGCGUCCGCCGCGCUCCGGCUCCCCGCACGGAUCGGCGCCCCUCCGGCCCCGCACUCCGCCAGGCCCGCGGCCCGUCGCCCUCCGGCCUGGGCCAAAGUUGCGCAAAUAGCCCCACAACUGGCAAAUACUUACCGGCCGCAACAGGAACCAGAGCUGCGGAGAUUUUAGGGAGUUUAAGGCAAAUCAGCCGCGGGAAAGGCGGGCGAAGGCGAAGGGGCCGCGAGCUGCAGUGGCGGCGGCGCGCGGCGCUCGGCGCUCGGGCUGGGCUGCGCGGAGAGGCUCUGGCUCUGCCAGGGACUGUGCUGCAACAAAGGACUUCCGCUGCCGCACAGCCGCGCCUGCCGCACCGCACUGAGCCGGCCCCGCUUACGCGGCGACUCCGGGUCUGCCCACCAGUUCGCUGCGGCGUCCGCCAGCCUUCCCCUCCCUCUCGCCCGCCCACCCACUCUGCCGCUGGCUGCUAGGGGCACCCGCGGUCGCCUGUUUGUUGCAACAAGUUUCUGCGUCGAGCUCCGAGGAGGCUGGCGCAACCCGCACCGCGGGGGCCGUCGCGGCGGCGGCGGCUUGACCACCCCUCUUGCCCCUCUCAAGGAACCACAAUGGACACUGCCAGCCAUAGCCUUGUUCUUCUCCAGCAGCUGAACAUGCAGCGAGAAUUUGGUUUUCUGUGUGAUUGCACAGUUGCAAUUGGAGAUGUUUACUUCAAAGCCCACAGAGCAGUGCUUGCUGCUUUUUCUAACUAUUUCAAGAUGAUAUUUAUUCACCAAACAAGACAGCAAAUCACCCACCUUGAGGUCAUAAAGGAGCUGGAAGCUGCUGGGUGCUUGUGCUGCUCUCUGGACGGCCUGAGCCAGGGCUAAGGCACCCUUGCCCCCUUCUGCCCAGUGAGUGCACUUCACGGCAUCAAAAGCCCCAUGUUCUCUGGAAAGGCGGCUGAUGAGGUCCAGCUCAGm6ACUCUGUAUCCGUCCUAUAAAGGAAGCAUUUCAUAUCAAAGCAUGGAAAAUGGCUGGAGAGACAGAAUUGUCUUCUUUUUGCCAUUAAACCUCAUGUGAAUUACCCACUGAUAAACGAm6ACACUAACCAAGAAAUUUGGCCUGGGUUUGAAUCUCAGCUCCGAAACUUACUAGCUGGUGm6ACUUUUGGCCAGUUACCUAAUCUUUAUGUGCCUCAAUUUCCACCCUGGUAAUACGCGAAUAAUCACAGCACUUAUUUCAUUGGGm6ACGUUAUGAGm6ACUCAGAUGGUAAAUCCAUGUAAAAUACUUGGAAAAUUCCCAGCACUCCAGAAGGAAUCAGUAAAUACUAGCAUUUAAGAA
Sequence (MODOMICS CODE ENCODING) AAAGAAGGUAACUAAUUUGGGAACUAGUCUCCGUAGGGGCUUCGCCUCCGACUCAGGGAGGCCGCACGCCCGGGACCUGACGCGCCGGCAACAAGCAGGCGGCCUGGCAGCCGCCCGUCACCGGGUCCUCGCAGCGCGUCCGCCGCGCUCCGGCUCCCCGCACGGAUCGGCGCCCCUCCGGCCCCGCACUCCGCCAGGCCCGCGGCCCGUCGCCCUCCGGCCUGGGCCAAAGUUGCGCAAAUAGCCCCACAACUGGCAAAUACUUACCGGCCGCAACAGGAACCAGAGCUGCGGAGAUUUUAGGGAGUUUAAGGCAAAUCAGCCGCGGGAAAGGCGGGCGAAGGCGAAGGGGCCGCGAGCUGCAGUGGCGGCGGCGCGCGGCGCUCGGCGCUCGGGCUGGGCUGCGCGGAGAGGCUCUGGCUCUGCCAGGGACUGUGCUGCAACAAAGGACUUCCGCUGCCGCACAGCCGCGCCUGCCGCACCGCACUGAGCCGGCCCCGCUUACGCGGCGACUCCGGGUCUGCCCACCAGUUCGCUGCGGCGUCCGCCAGCCUUCCCCUCCCUCUCGCCCGCCCACCCACUCUGCCGCUGGCUGCUAGGGGCACCCGCGGUCGCCUGUUUGUUGCAACAAGUUUCUGCGUCGAGCUCCGAGGAGGCUGGCGCAACCCGCACCGCGGGGGCCGUCGCGGCGGCGGCGGCUUGACCACCCCUCUUGCCCCUCUCAAGGAACCACAAUGGACACUGCCAGCCAUAGCCUUGUUCUUCUCCAGCAGCUGAACAUGCAGCGAGAAUUUGGUUUUCUGUGUGAUUGCACAGUUGCAAUUGGAGAUGUUUACUUCAAAGCCCACAGAGCAGUGCUUGCUGCUUUUUCUAACUAUUUCAAGAUGAUAUUUAUUCACCAAACAAGACAGCAAAUCACCCACCUUGAGGUCAUAAAGGAGCUGGAAGCUGCUGGGUGCUUGUGCUGCUCUCUGGACGGCCUGAGCCAGGGCUAAGGCACCCUUGCCCCCUUCUGCCCAGUGAGUGCACUUCACGGCAUCAAAAGCCCCAUGUUCUCUGGAAAGGCGGCUGAUGAGGUCCAGCUCAG2000000006ACUCUGUAUCCGUCCUAUAAAGGAAGCAUUUCAUAUCAAAGCAUGGAAAAUGGCUGGAGAGACAGAAUUGUCUUCUUUUUGCCAUUAAACCUCAUGUGAAUUACCCACUGAUAAACGA2000000006ACACUAACCAAGAAAUUUGGCCUGGGUUUGAAUCUCAGCUCCGAAACUUACUAGCUGGUG2000000006ACUUUUGGCCAGUUACCUAAUCUUUAUGUGCCUCAAUUUCCACCCUGGUAAUACGCGAAUAAUCACAGCACUUAUUUCAUUGGG2000000006ACGUUAUGAG2000000006ACUCAGAUGGUAAAUCCAUGUAAAAUACUUGGAAAAUUCCCAGCACUCCAGAAGGAAUCAGUAAAUACUAGCAUUUAAGAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 1088 1206 1266 1350 1360
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 14:64449458:- 14:64449340:- 14:64449280:- 14:64449196:- 14:64449186:-
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs 6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
Lny8GcCeVGc9
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
Yfn77uLS5tv8
6UuHp6YApVKv
jNkxUQNx8GRd
msuJfBpJvM5H
VyCX26p5UBRL
BsCW7emuRX7M
Lny8GcCeVGc9
Lny8GcCeVGc9
UKen6WEino9G
Lny8GcCeVGc9
UKen6WEino9G