General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000343765
Gene ID:	ENSG00000151445
Gene Name:	VIPAS39
Sequence (UNICHARACTER ENCODING)	AGAAGGGCUGGUCCAGCGGCGGCGGAGGCUGGCGCUGUCCUGAGAGGGAGGGCUCUGUGCGGAAGAGUCAGGGCGACCCUUGGGCGCUGGAGUACGCUUGGGACUGGGGCUGCGAGUGAGCACCAGCGAUUGGUUCGGAAGCGGACAUUUGGUUCAGAACGAGCAUUUAACUCUGCCAGGGAUCCGCUGGGCUCUGACGACUGCGGUAGAUCCAUGGCUUCCUGGACGUUCACCCGUAGAGUCAUCCUAGCUUAACUCUUGUUCCCUGGUCUCAGUUCACAAGCCUCACCUGUAUCUUCCUGGCUCGGAAGAUAAUUGAAACCAAGUCUGACUUCUCAAUGAAUCGGACAAAGGGUGAUGAGGAGGAGUAUUGGAACAGCUCCAAGUUCAAGGCUUUUACCUUUGACGAUGAAGACGAUGAGCUUUCACAGUUAAAGGAGUCCAAGCGGGCGGUGAACAGCCUCCGAGACUUCGUGGAUGAUGAUGACGAUGAUGACCUGGAGCGAGUCAGCUGGAGUGGGGAACCUGUGGGAAGUAUCUCAUGGUCCAUCAGAGAGACUGCUGGUAAUAGCGGCUCAACCCACGAGGGGCGUGAACAGCUAAAGAGCCGAAACAGCUUCUCCUCCUAUGCACAACUACCCAAGCCUACUUCUACCUACUCCCUGAGCAGCUUUUUUAGAGGUAGAACUAGACCUGGAAGUUUCCAGUCCCUUUCUGAUGCUCUGUCAGACACACCUGCCAAAAGCUAUGCUCCAGAGCUGGGGAGЖCCCAAAGGGGAGUAUAGGGAUUACAGCAAUGACUGGAGCCCCAGUGAUACAGUGCGACGUCUCCGGAAGGGCAAGGUUUGCUCACUAGAGAGAUUCCGCUCCUUACAGGACAAACUACAACUCCUAGAAGAGGCAGUAAGCAUGCAUGAUGGAAACGUCAUUACUGCAGUUCUGAUUUUCCUGAAGAGGACACUGAGCAAAGAGAUCCUCUUCCGAGAGCUGGAGGUGCGACAGGUUGCCCUGAGACAUCUUAUUCACUUCCUUAAGGAAAUAGGGGAUCAAAAGUUGCUUUUAGACCUCUUCAGGUUCCUAGAUAGAACAGAAGAGCUUGCGCUAUCUCAUUAUCGAGAGCAUUUGAACAUUCAGGACCCUGACAAACGAAAAGAAUUUCUUAAAACCUGUGUUGGUUUGCCAUUUUCAGCAGAAGAUUCCGCACACAUACAGGACCAUUACACGCUCCUGGAACGUCAGAUCAUUAUUGAGGCAAAUGAUCGCCAUCUAGAAUCAGCAGGACAGACUGAGAUCUUCCGAAAGCACCCCCGCAAAGCCUCCAPCCUCAACAUGCCACUAGUGACAACACUUUUCUACUCCUGCUUCUAUCACUACACAGAGGCUGAGGGGACAUUCAGCAGUCCCGUCAACCUGAAGAAGACAUUUAAGAUCCCAGAUAAACAGUAUGUGCUGACAGCCCUGGCUGCUCGUGCCAAGCUUCGAGCCUGGAAUGAUGUAGAUGCCCUAUUCACCACAAAGAACUGGCUGGGCUAUACCAAGAAGAGAGCACCCAUUGGCUUCCAUCGGGUUGUCGAAAUUUUGCACAAGAACAAUGCCCCUGUGCAGAUAUUACAGGAGUAUGUCAAUCUGGUGGAAGAUGUGGACACGAAGUUGAACUUAGCCACUAAGUUCAAGUGCCAUGAUGUCGUCAUUGAUЖCCUACCGGGACCUGAAGGAUCGUCAACAGUUGCUAGCAUACAGGAGUAAGGUAGAUAAAGGAUCAGCAGAGGAGGAGAAGAUUGAUGCUCUUCUCAGCAGCUCGCAAAUUCGAUGGAAGAAUUAAGUGGCAUUGACUACCUUGAAGCCUGCCUCAUUUCCUCCUCUCCUGCCUGUGAAAGCAGAGAGAGCUCUUCUUUGGGAGAGCUGCGGCAUCACAUCGCUUGGGCCCAUUACCCAUGGGCAGUGCCAGCUACUCUUGACACAGAUAЖCUUCAGЖCUGAUCUUCUGUCCAAGGAACAUCAUCUGAGGAUCGAGAUCUAAAGCUUUGAGUCAUGAGAAUGAUUCUCUCCACCUGGUGCUCAUAUGAAGGUGGGAGUGAUUUCUAGAUUGGGCCCCUACUGGGUAAGAUCUCACUUGGUCUGAGAAAAGUGЖCUGCUCCAGAAAGGAAGAGGUAUGGGAGUCAUAGGGUGGCUACUGCAUUCCACUCAGCUAAUUAUGAUCCAGGЖCUUGGCGCUGGЖCAUUGGCAGUUCUGCUCUGAAUGAAGUCAGAACAGAACCAAAAUGGCCUCAGGAAGGAAUGCCAGUGUUUCCCAAGACCUCCUGGAGAUGCACUCACACCAGACUGCACAGACCCCUCCACAUUAUGCCACACAUGGCCUAGACGUUGUGUUUCCUCAGCCAUUUUCCCUCUGCUGCCCCAGUUUACUCUGUCCAAAACCCUAAGGUUCUUCUCUCACUUGAACACAGACGACCUUGCUUGGGUGAUGAGACAPCCCCUPUAUCUCUUCCUCUACUGCUGGCCAAGACCCGUCACUPUAUAAGAAGCUCAGAUGCAGCAGUGCUGGAGAGCUCUCUCUPUAUGCAAAAAUCUCAUUUCACCAGGAGCUUUCAGAAGUUUCACCUGGGCUAAAUUCAGCAGCAUUUCUGUUAGGAUAUUUAGAUGGAGGUUUUAUUUUCACACUUGGAUUCUUGCUCUGUACCAAUAUUUGCCUCCUUUUCUGUGACUGAACUGGGUUUUUCUGACAUGCCUAGACUCCUAAUAAAGGUAUUUCUUCCUUGGUGCCUUC
Sequence (SHORT NAMES ENCODING)	AGAAGGGCUGGUCCAGCGGCGGCGGAGGCUGGCGCUGUCCUGAGAGGGAGGGCUCUGUGCGGAAGAGUCAGGGCGACCCUUGGGCGCUGGAGUACGCUUGGGACUGGGGCUGCGAGUGAGCACCAGCGAUUGGUUCGGAAGCGGACAUUUGGUUCAGAACGAGCAUUUAACUCUGCCAGGGAUCCGCUGGGCUCUGACGACUGCGGUAGAUCCAUGGCUUCCUGGACGUUCACCCGUAGAGUCAUCCUAGCUUAACUCUUGUUCCCUGGUCUCAGUUCACAAGCCUCACCUGUAUCUUCCUGGCUCGGAAGAUAAUUGAAACCAAGUCUGACUUCUCAAUGAAUCGGACAAAGGGUGAUGAGGAGGAGUAUUGGAACAGCUCCAAGUUCAAGGCUUUUACCUUUGACGAUGAAGACGAUGAGCUUUCACAGUUAAAGGAGUCCAAGCGGGCGGUGAACAGCCUCCGAGACUUCGUGGAUGAUGAUGACGAUGAUGACCUGGAGCGAGUCAGCUGGAGUGGGGAACCUGUGGGAAGUAUCUCAUGGUCCAUCAGAGAGACUGCUGGUAAUAGCGGCUCAACCCACGAGGGGCGUGAACAGCUAAAGAGCCGAAACAGCUUCUCCUCCUAUGCACAACUACCCAAGCCUACUUCUACCUACUCCCUGAGCAGCUUUUUUAGAGGUAGAACUAGACCUGGAAGUUUCCAGUCCCUUUCUGAUGCUCUGUCAGACACACCUGCCAAAAGCUAUGCUCCAGAGCUGGGGAGm6ACCCAAAGGGGAGUAUAGGGAUUACAGCAAUGACUGGAGCCCCAGUGAUACAGUGCGACGUCUCCGGAAGGGCAAGGUUUGCUCACUAGAGAGAUUCCGCUCCUUACAGGACAAACUACAACUCCUAGAAGAGGCAGUAAGCAUGCAUGAUGGAAACGUCAUUACUGCAGUUCUGAUUUUCCUGAAGAGGACACUGAGCAAAGAGAUCCUCUUCCGAGAGCUGGAGGUGCGACAGGUUGCCCUGAGACAUCUUAUUCACUUCCUUAAGGAAAUAGGGGAUCAAAAGUUGCUUUUAGACCUCUUCAGGUUCCUAGAUAGAACAGAAGAGCUUGCGCUAUCUCAUUAUCGAGAGCAUUUGAACAUUCAGGACCCUGACAAACGAAAAGAAUUUCUUAAAACCUGUGUUGGUUUGCCAUUUUCAGCAGAAGAUUCCGCACACAUACAGGACCAUUACACGCUCCUGGAACGUCAGAUCAUUAUUGAGGCAAAUGAUCGCCAUCUAGAAUCAGCAGGACAGACUGAGAUCUUCCGAAAGCACCCCCGCAAAGCCUCCAYCCUCAACAUGCCACUAGUGACAACACUUUUCUACUCCUGCUUCUAUCACUACACAGAGGCUGAGGGGACAUUCAGCAGUCCCGUCAACCUGAAGAAGACAUUUAAGAUCCCAGAUAAACAGUAUGUGCUGACAGCCCUGGCUGCUCGUGCCAAGCUUCGAGCCUGGAAUGAUGUAGAUGCCCUAUUCACCACAAAGAACUGGCUGGGCUAUACCAAGAAGAGAGCACCCAUUGGCUUCCAUCGGGUUGUCGAAAUUUUGCACAAGAACAAUGCCCCUGUGCAGAUAUUACAGGAGUAUGUCAAUCUGGUGGAAGAUGUGGACACGAAGUUGAACUUAGCCACUAAGUUCAAGUGCCAUGAUGUCGUCAUUGAUm6ACCUACCGGGACCUGAAGGAUCGUCAACAGUUGCUAGCAUACAGGAGUAAGGUAGAUAAAGGAUCAGCAGAGGAGGAGAAGAUUGAUGCUCUUCUCAGCAGCUCGCAAAUUCGAUGGAAGAAUUAAGUGGCAUUGACUACCUUGAAGCCUGCCUCAUUUCCUCCUCUCCUGCCUGUGAAAGCAGAGAGAGCUCUUCUUUGGGAGAGCUGCGGCAUCACAUCGCUUGGGCCCAUUACCCAUGGGCAGUGCCAGCUACUCUUGACACAGAUAm6ACUUCAGm6ACUGAUCUUCUGUCCAAGGAACAUCAUCUGAGGAUCGAGAUCUAAAGCUUUGAGUCAUGAGAAUGAUUCUCUCCACCUGGUGCUCAUAUGAAGGUGGGAGUGAUUUCUAGAUUGGGCCCCUACUGGGUAAGAUCUCACUUGGUCUGAGAAAAGUGm6ACUGCUCCAGAAAGGAAGAGGUAUGGGAGUCAUAGGGUGGCUACUGCAUUCCACUCAGCUAAUUAUGAUCCAGGm6ACUUGGCGCUGGm6ACAUUGGCAGUUCUGCUCUGAAUGAAGUCAGAACAGAACCAAAAUGGCCUCAGGAAGGAAUGCCAGUGUUUCCCAAGACCUCCUGGAGAUGCACUCACACCAGACUGCACAGACCCCUCCACAUUAUGCCACACAUGGCCUAGACGUUGUGUUUCCUCAGCCAUUUUCCCUCUGCUGCCCCAGUUUACUCUGUCCAAAACCCUAAGGUUCUUCUCUCACUUGAACACAGACGACCUUGCUUGGGUGAUGAGACAYCCCCUYUAUCUCUUCCUCUACUGCUGGCCAAGACCCGUCACUYUAUAAGAAGCUCAGAUGCAGCAGUGCUGGAGAGCUCUCUCUYUAUGCAAAAAUCUCAUUUCACCAGGAGCUUUCAGAAGUUUCACCUGGGCUAAAUUCAGCAGCAUUUCUGUUAGGAUAUUUAGAUGGAGGUUUUAUUUUCACACUUGGAUUCUUGCUCUGUACCAAUAUUUGCCUCCUUUUCUGUGACUGAACUGGGUUUUUCUGACAUGCCUAGACUCCUAAUAAAGGUAUUUCUUCCUUGGUGCCUUC
Sequence (MODOMICS CODE ENCODING)	AGAAGGGCUGGUCCAGCGGCGGCGGAGGCUGGCGCUGUCCUGAGAGGGAGGGCUCUGUGCGGAAGAGUCAGGGCGACCCUUGGGCGCUGGAGUACGCUUGGGACUGGGGCUGCGAGUGAGCACCAGCGAUUGGUUCGGAAGCGGACAUUUGGUUCAGAACGAGCAUUUAACUCUGCCAGGGAUCCGCUGGGCUCUGACGACUGCGGUAGAUCCAUGGCUUCCUGGACGUUCACCCGUAGAGUCAUCCUAGCUUAACUCUUGUUCCCUGGUCUCAGUUCACAAGCCUCACCUGUAUCUUCCUGGCUCGGAAGAUAAUUGAAACCAAGUCUGACUUCUCAAUGAAUCGGACAAAGGGUGAUGAGGAGGAGUAUUGGAACAGCUCCAAGUUCAAGGCUUUUACCUUUGACGAUGAAGACGAUGAGCUUUCACAGUUAAAGGAGUCCAAGCGGGCGGUGAACAGCCUCCGAGACUUCGUGGAUGAUGAUGACGAUGAUGACCUGGAGCGAGUCAGCUGGAGUGGGGAACCUGUGGGAAGUAUCUCAUGGUCCAUCAGAGAGACUGCUGGUAAUAGCGGCUCAACCCACGAGGGGCGUGAACAGCUAAAGAGCCGAAACAGCUUCUCCUCCUAUGCACAACUACCCAAGCCUACUUCUACCUACUCCCUGAGCAGCUUUUUUAGAGGUAGAACUAGACCUGGAAGUUUCCAGUCCCUUUCUGAUGCUCUGUCAGACACACCUGCCAAAAGCUAUGCUCCAGAGCUGGGGAG2000000006ACCCAAAGGGGAGUAUAGGGAUUACAGCAAUGACUGGAGCCCCAGUGAUACAGUGCGACGUCUCCGGAAGGGCAAGGUUUGCUCACUAGAGAGAUUCCGCUCCUUACAGGACAAACUACAACUCCUAGAAGAGGCAGUAAGCAUGCAUGAUGGAAACGUCAUUACUGCAGUUCUGAUUUUCCUGAAGAGGACACUGAGCAAAGAGAUCCUCUUCCGAGAGCUGGAGGUGCGACAGGUUGCCCUGAGACAUCUUAUUCACUUCCUUAAGGAAAUAGGGGAUCAAAAGUUGCUUUUAGACCUCUUCAGGUUCCUAGAUAGAACAGAAGAGCUUGCGCUAUCUCAUUAUCGAGAGCAUUUGAACAUUCAGGACCCUGACAAACGAAAAGAAUUUCUUAAAACCUGUGUUGGUUUGCCAUUUUCAGCAGAAGAUUCCGCACACAUACAGGACCAUUACACGCUCCUGGAACGUCAGAUCAUUAUUGAGGCAAAUGAUCGCCAUCUAGAAUCAGCAGGACAGACUGAGAUCUUCCGAAAGCACCCCCGCAAAGCCUCCA2000000009UCCUCAACAUGCCACUAGUGACAACACUUUUCUACUCCUGCUUCUAUCACUACACAGAGGCUGAGGGGACAUUCAGCAGUCCCGUCAACCUGAAGAAGACAUUUAAGAUCCCAGAUAAACAGUAUGUGCUGACAGCCCUGGCUGCUCGUGCCAAGCUUCGAGCCUGGAAUGAUGUAGAUGCCCUAUUCACCACAAAGAACUGGCUGGGCUAUACCAAGAAGAGAGCACCCAUUGGCUUCCAUCGGGUUGUCGAAAUUUUGCACAAGAACAAUGCCCCUGUGCAGAUAUUACAGGAGUAUGUCAAUCUGGUGGAAGAUGUGGACACGAAGUUGAACUUAGCCACUAAGUUCAAGUGCCAUGAUGUCGUCAUUGAU2000000006ACCUACCGGGACCUGAAGGAUCGUCAACAGUUGCUAGCAUACAGGAGUAAGGUAGAUAAAGGAUCAGCAGAGGAGGAGAAGAUUGAUGCUCUUCUCAGCAGCUCGCAAAUUCGAUGGAAGAAUUAAGUGGCAUUGACUACCUUGAAGCCUGCCUCAUUUCCUCCUCUCCUGCCUGUGAAAGCAGAGAGAGCUCUUCUUUGGGAGAGCUGCGGCAUCACAUCGCUUGGGCCCAUUACCCAUGGGCAGUGCCAGCUACUCUUGACACAGAUA2000000006ACUUCAG2000000006ACUGAUCUUCUGUCCAAGGAACAUCAUCUGAGGAUCGAGAUCUAAAGCUUUGAGUCAUGAGAAUGAUUCUCUCCACCUGGUGCUCAUAUGAAGGUGGGAGUGAUUUCUAGAUUGGGCCCCUACUGGGUAAGAUCUCACUUGGUCUGAGAAAAGUG2000000006ACUGCUCCAGAAAGGAAGAGGUAUGGGAGUCAUAGGGUGGCUACUGCAUUCCACUCAGCUAAUUAUGAUCCAGG2000000006ACUUGGCGCUGG2000000006ACAUUGGCAGUUCUGCUCUGAAUGAAGUCAGAACAGAACCAAAAUGGCCUCAGGAAGGAAUGCCAGUGUUUCCCAAGACCUCCUGGAGAUGCACUCACACCAGACUGCACAGACCCCUCCACAUUAUGCCACACAUGGCCUAGACGUUGUGUUUCCUCAGCCAUUUUCCCUCUGCUGCCCCAGUUUACUCUGUCCAAAACCCUAAGGUUCUUCUCUCACUUGAACACAGACGACCUUGCUUGGGUGAUGAGACA2000000009UCCCCU2000000009UUAUCUCUUCCUCUACUGCUGGCCAAGACCCGUCACU2000000009UUAUAAGAAGCUCAGAUGCAGCAGUGCUGGAGAGCUCUCUCU2000000009UUAUGCAAAAAUCUCAUUUCACCAGGAGCUUUCAGAAGUUUCACCUGGGCUAAAUUCAGCAGCAUUUCUGUUAGGAUAUUUAGAUGGAGGUUUUAUUUUCACACUUGGAUUCUUGCUCUGUACCAAUAUUUGCCUCCUUUUCUGUGACUGAACUGGGUUUUUCUGACAUGCCUAGACUCCUAAUAAAGGUAUUUCUUCCUUGGUGCCUUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	767	1321	1695	1965	1972	2127	2201	2213	2467	2473	2510	2552
Modification Positions	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	Y	Y
Genomic Coordinates	14:77449311:-	14:77435323:-	14:77428474:-	14:77427471:-	14:77427464:-	14:77427309:-	14:77427235:-	14:77427223:-	14:77426969:-	14:77426963:-	14:77426926:-	14:77426884:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL 93arJtwJmuS9 BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8