General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000672264
Gene ID:	ENSG00000165588
Gene Name:	OTX2
Sequence (UNICHARACTER ENCODING)	AGCAAAUCUCCCUGAGAGCGGGACCGGCCUCAGCUCCAACACAGCCUCCACUGUGAUUAAAAAUAAAAAUUGCUAGAGCAGCCCUCACUCGCCACAUCUACUUUGAUAGCUGGCUAUUUGGAAUUUAAAGGAUAUUUGACUUUUUCUAACCUCCCAUGAGGCUGUAAGUUCCACUGCUCCAAACCCACCCACCAAGGACUCUGAACCUGUCCACCCCGGGCGCAUCAAGAUCUUCCAGCUGGGUACCCCCGAUUUGGGCCGACUUUGCACCUCCAAACAACCUUAGCAUGAUGUCUUAUCUUAAGCAACCGCCUUACGCAGUCAAUGGGCUGAGUCUGACCACUUCGGGUAUGGACUUGCUGCACCCCUCCGUGGGCUACCCGGGGCCCUGGGCUUCUUGUCCCGCAGCCACCCCCCGGAAACAGCGCCGGGAGAGGACGACGUUCACUCGGGCGCAGCUAGAUGUGCUGGAAGCACUGUUUGCCAAGACCCGGUACCCAGACAUCUUCAUGCGAGAGGAGGUGGCACUGAAAAUCAACUUGCCCGAGUCGAGGGUGCAGGUAUGGUUUAAGAAUCGAAGAGCUAAGUGCCGCCAACAACAGCAACAACAGCAGAAUGGAGGUCAAAACAAAGUGAGACCUGCCAAAAAGAAGACAUCUCCAGCUCGGGAAGUGAGUUCAGAGAGUGGAACAAGUGGCCAAUUCACUCCCCCCUCUAGCACCUCAGUCCCGACCAUUGCCAGCAGCAGUGCUCCUGUGUCUAUCUGGAGCCCAGCUUCCAUCUCCCCACUGUCAGAUCCCUUGUCCACCUCCUCUUCCUGCAUGCAGAGGUCCUAUCCCAUGACCUAUACUCAGGCUUCAGGUUAUAGUCAAGGAUAUGCUGGCUCAACUUCCUACUUUGGGGGCAUGGЖCUGUGGAUCAUAUUUGACCCCUAUGCAUCACCAGCUUCCCGGЖCCAGGGGCCACACUCAGUCCCAUGGGUACCAAUGCAGUCACCAGCCAUCUCAAUCAGUCCCCAGCUUCUCUUUCCACCCAGGGAUAUGGAGCUUCAAGCUUGGGUUUUAACUCAACCACUGAUUGCUUGGAUUAUAAGGACCAAACUGCCUCCUGGAAGCUUAACUUCAAUGCUGACUGCUUGGAUUAUAAAGAUCAGACAUCCUCGUGGAAAUUCCAGGUUUUGUGAAGACCUGUAGAACCUCUUUUUGUGGGUGAUUUUUAAAUAUACUGGGCUGGACAUUCCAGUUUUAGCCAGGCAUUGGUUAAAAGAGUUAGAUGGGAUGAUGCUCAGACUCAUCUGAUCAAAGUUCCGAGAGGCAUAGAAGGAAAAACGAAGGGCCUUAGAGGGGCCUACAAACCAGCAACAUGAAAUGGACAAACCAAUCUGCUUAAGAUCCUGUCAUAGUUUUAGAUCAUUGGUUAUCCUGAUUUGCAAAGUGAUCAAAAGCAUUCUAGCCAUGUGCAACCAAACACCACCAAAAAUAAAAUCAAACAAAACUAAGUUGUGAAGGAAGGGAGGGAAGGUCAUAGCCUUCUUAAGCAGAGGUGUUCCAUUGUUUUAGCCAAUCCUUGGUUGAAUCUUAGGAAUGAЖCAGUGUCUCAAGCUCAUUCACGUUUCAUGACCAACUGGUAGUUGGCACUGAAAAAACUUUUCAGGGCUGUGUGAAUUGUGUGACUGAUUGUCCUAGAUGCACUACUPUAUUUAAAAAAUAAUGUUCAUAAGGAGUCAAUAUGUAGUUUAAGAGACAAUCAGUGUGUGUCUUAUAAAUGGUACAUCUGUGGUUUUUAAUCUGUGCUAGACUUCAAAACUGUGAUCUCCUGUUAUUGUAUGCAACCUUGAACUCCACCUCUGCAGGGGUUCUUCUGUGAUUAAAUAGGUUAUAAUUAUAAGCAAAAUUCAGAGCAACUGAGUACUGAUCUAAAAAGAUUACCUUUGGCUGGAGGUGAGCUGCACUGAAACUPUACGACAAAAUGUCUCUGGACAAAGAGAGUCAGAGAAGAGAAGCAAAAGGЖCACUAAUUCAUCUGUAAUUUACUGUUGGUAAGCCUAGCAGUAAAGAGACAUUGGUCAAUUGCUCUGACCCUGAUGAAUUAUUAAACUGAGAUCAUUGUCGUUUAUGCUUGCAGAUGUUAAAUGGAAAAGUUAUAUAUGCAUAAACCUUUUCUUCCUGGAUUUGGCAGAUAUGUAUAAUUAUAUUAAAAUGGUUCUAGCACAACAUUGGGUCCAGUUUAAUUUUACACCGCUAUUUAUGAAUAAGAAGCCUACAUUCAGCCUUUCCUCCCCAAAACACGUUUUUCUUAGGACAGAGAGUAAAUUAGCAAACUUAUUUUUACUUUUUUUUUUUGCUAAUCUAUGCAUAAAAUAGAUAUGAAUGACAGUGGUAGGUAGACUUUUUGUGACUUUCAUCAGGAUUGCUCUGAAAUUGAGUUUGGAGAGCCUAACAACAAGAUCUUGUUUUCCUUGCUUUUCCCUCCCUACUUCAAACCUGAACGAUUUCUUAGGCACUUUAUUAGAAUGUUUUAAAAUAUAUCAAGUUUUUAAGAGGGAGGAGGAGAAUUGGAGUAUCUCUGAAAACAUGAGAAUGACAAGAAUUUCUUGUUACUAUUCUCUUAUUUGAUUAAGGGGAUUUUUUUUUUUUAACUUCCAAAAACUGAGGUAAACAUGAGAGGGAGUGUAAUCAGAAUCUGAAAGUAAUUCAGGCAGAAAUGAUUCCUGAACAAAAGAGUUUCAGAAAAGUUUUAAAACCUAUAAUUUCAGUAGUUGAACAUAAGGCACCCUGGUCAGUUUGUGUGUAUGUGUUUAAGAAAGUGCCGAGGGGGAAAAAAUGGGUCCCUUUUCAGUUGUACCUGCAUUUUGUAAACCAGUCACCAGAAAAGACAAAUGGGCCAAUGAUCAUGGUGCUCCUCAGGUAAAAGCAAUAUUUAAUUUCAUUUUAAGCUGCUUAAGCUCUUACAGCUGACCAAAAUUAAGUGACUCUUGAUUGUAACGUUUUAAAUGAAGGUUAGCAGUUGCAACCA
Sequence (SHORT NAMES ENCODING)	AGCAAAUCUCCCUGAGAGCGGGACCGGCCUCAGCUCCAACACAGCCUCCACUGUGAUUAAAAAUAAAAAUUGCUAGAGCAGCCCUCACUCGCCACAUCUACUUUGAUAGCUGGCUAUUUGGAAUUUAAAGGAUAUUUGACUUUUUCUAACCUCCCAUGAGGCUGUAAGUUCCACUGCUCCAAACCCACCCACCAAGGACUCUGAACCUGUCCACCCCGGGCGCAUCAAGAUCUUCCAGCUGGGUACCCCCGAUUUGGGCCGACUUUGCACCUCCAAACAACCUUAGCAUGAUGUCUUAUCUUAAGCAACCGCCUUACGCAGUCAAUGGGCUGAGUCUGACCACUUCGGGUAUGGACUUGCUGCACCCCUCCGUGGGCUACCCGGGGCCCUGGGCUUCUUGUCCCGCAGCCACCCCCCGGAAACAGCGCCGGGAGAGGACGACGUUCACUCGGGCGCAGCUAGAUGUGCUGGAAGCACUGUUUGCCAAGACCCGGUACCCAGACAUCUUCAUGCGAGAGGAGGUGGCACUGAAAAUCAACUUGCCCGAGUCGAGGGUGCAGGUAUGGUUUAAGAAUCGAAGAGCUAAGUGCCGCCAACAACAGCAACAACAGCAGAAUGGAGGUCAAAACAAAGUGAGACCUGCCAAAAAGAAGACAUCUCCAGCUCGGGAAGUGAGUUCAGAGAGUGGAACAAGUGGCCAAUUCACUCCCCCCUCUAGCACCUCAGUCCCGACCAUUGCCAGCAGCAGUGCUCCUGUGUCUAUCUGGAGCCCAGCUUCCAUCUCCCCACUGUCAGAUCCCUUGUCCACCUCCUCUUCCUGCAUGCAGAGGUCCUAUCCCAUGACCUAUACUCAGGCUUCAGGUUAUAGUCAAGGAUAUGCUGGCUCAACUUCCUACUUUGGGGGCAUGGm6ACUGUGGAUCAUAUUUGACCCCUAUGCAUCACCAGCUUCCCGGm6ACCAGGGGCCACACUCAGUCCCAUGGGUACCAAUGCAGUCACCAGCCAUCUCAAUCAGUCCCCAGCUUCUCUUUCCACCCAGGGAUAUGGAGCUUCAAGCUUGGGUUUUAACUCAACCACUGAUUGCUUGGAUUAUAAGGACCAAACUGCCUCCUGGAAGCUUAACUUCAAUGCUGACUGCUUGGAUUAUAAAGAUCAGACAUCCUCGUGGAAAUUCCAGGUUUUGUGAAGACCUGUAGAACCUCUUUUUGUGGGUGAUUUUUAAAUAUACUGGGCUGGACAUUCCAGUUUUAGCCAGGCAUUGGUUAAAAGAGUUAGAUGGGAUGAUGCUCAGACUCAUCUGAUCAAAGUUCCGAGAGGCAUAGAAGGAAAAACGAAGGGCCUUAGAGGGGCCUACAAACCAGCAACAUGAAAUGGACAAACCAAUCUGCUUAAGAUCCUGUCAUAGUUUUAGAUCAUUGGUUAUCCUGAUUUGCAAAGUGAUCAAAAGCAUUCUAGCCAUGUGCAACCAAACACCACCAAAAAUAAAAUCAAACAAAACUAAGUUGUGAAGGAAGGGAGGGAAGGUCAUAGCCUUCUUAAGCAGAGGUGUUCCAUUGUUUUAGCCAAUCCUUGGUUGAAUCUUAGGAAUGAm6ACAGUGUCUCAAGCUCAUUCACGUUUCAUGACCAACUGGUAGUUGGCACUGAAAAAACUUUUCAGGGCUGUGUGAAUUGUGUGACUGAUUGUCCUAGAUGCACUACUYUAUUUAAAAAAUAAUGUUCAUAAGGAGUCAAUAUGUAGUUUAAGAGACAAUCAGUGUGUGUCUUAUAAAUGGUACAUCUGUGGUUUUUAAUCUGUGCUAGACUUCAAAACUGUGAUCUCCUGUUAUUGUAUGCAACCUUGAACUCCACCUCUGCAGGGGUUCUUCUGUGAUUAAAUAGGUUAUAAUUAUAAGCAAAAUUCAGAGCAACUGAGUACUGAUCUAAAAAGAUUACCUUUGGCUGGAGGUGAGCUGCACUGAAACUYUACGACAAAAUGUCUCUGGACAAAGAGAGUCAGAGAAGAGAAGCAAAAGGm6ACACUAAUUCAUCUGUAAUUUACUGUUGGUAAGCCUAGCAGUAAAGAGACAUUGGUCAAUUGCUCUGACCCUGAUGAAUUAUUAAACUGAGAUCAUUGUCGUUUAUGCUUGCAGAUGUUAAAUGGAAAAGUUAUAUAUGCAUAAACCUUUUCUUCCUGGAUUUGGCAGAUAUGUAUAAUUAUAUUAAAAUGGUUCUAGCACAACAUUGGGUCCAGUUUAAUUUUACACCGCUAUUUAUGAAUAAGAAGCCUACAUUCAGCCUUUCCUCCCCAAAACACGUUUUUCUUAGGACAGAGAGUAAAUUAGCAAACUUAUUUUUACUUUUUUUUUUUGCUAAUCUAUGCAUAAAAUAGAUAUGAAUGACAGUGGUAGGUAGACUUUUUGUGACUUUCAUCAGGAUUGCUCUGAAAUUGAGUUUGGAGAGCCUAACAACAAGAUCUUGUUUUCCUUGCUUUUCCCUCCCUACUUCAAACCUGAACGAUUUCUUAGGCACUUUAUUAGAAUGUUUUAAAAUAUAUCAAGUUUUUAAGAGGGAGGAGGAGAAUUGGAGUAUCUCUGAAAACAUGAGAAUGACAAGAAUUUCUUGUUACUAUUCUCUUAUUUGAUUAAGGGGAUUUUUUUUUUUUAACUUCCAAAAACUGAGGUAAACAUGAGAGGGAGUGUAAUCAGAAUCUGAAAGUAAUUCAGGCAGAAAUGAUUCCUGAACAAAAGAGUUUCAGAAAAGUUUUAAAACCUAUAAUUUCAGUAGUUGAACAUAAGGCACCCUGGUCAGUUUGUGUGUAUGUGUUUAAGAAAGUGCCGAGGGGGAAAAAAUGGGUCCCUUUUCAGUUGUACCUGCAUUUUGUAAACCAGUCACCAGAAAAGACAAAUGGGCCAAUGAUCAUGGUGCUCCUCAGGUAAAAGCAAUAUUUAAUUUCAUUUUAAGCUGCUUAAGCUCUUACAGCUGACCAAAAUUAAGUGACUCUUGAUUGUAACGUUUUAAAUGAAGGUUAGCAGUUGCAACCA
Sequence (MODOMICS CODE ENCODING)	AGCAAAUCUCCCUGAGAGCGGGACCGGCCUCAGCUCCAACACAGCCUCCACUGUGAUUAAAAAUAAAAAUUGCUAGAGCAGCCCUCACUCGCCACAUCUACUUUGAUAGCUGGCUAUUUGGAAUUUAAAGGAUAUUUGACUUUUUCUAACCUCCCAUGAGGCUGUAAGUUCCACUGCUCCAAACCCACCCACCAAGGACUCUGAACCUGUCCACCCCGGGCGCAUCAAGAUCUUCCAGCUGGGUACCCCCGAUUUGGGCCGACUUUGCACCUCCAAACAACCUUAGCAUGAUGUCUUAUCUUAAGCAACCGCCUUACGCAGUCAAUGGGCUGAGUCUGACCACUUCGGGUAUGGACUUGCUGCACCCCUCCGUGGGCUACCCGGGGCCCUGGGCUUCUUGUCCCGCAGCCACCCCCCGGAAACAGCGCCGGGAGAGGACGACGUUCACUCGGGCGCAGCUAGAUGUGCUGGAAGCACUGUUUGCCAAGACCCGGUACCCAGACAUCUUCAUGCGAGAGGAGGUGGCACUGAAAAUCAACUUGCCCGAGUCGAGGGUGCAGGUAUGGUUUAAGAAUCGAAGAGCUAAGUGCCGCCAACAACAGCAACAACAGCAGAAUGGAGGUCAAAACAAAGUGAGACCUGCCAAAAAGAAGACAUCUCCAGCUCGGGAAGUGAGUUCAGAGAGUGGAACAAGUGGCCAAUUCACUCCCCCCUCUAGCACCUCAGUCCCGACCAUUGCCAGCAGCAGUGCUCCUGUGUCUAUCUGGAGCCCAGCUUCCAUCUCCCCACUGUCAGAUCCCUUGUCCACCUCCUCUUCCUGCAUGCAGAGGUCCUAUCCCAUGACCUAUACUCAGGCUUCAGGUUAUAGUCAAGGAUAUGCUGGCUCAACUUCCUACUUUGGGGGCAUGG2000000006ACUGUGGAUCAUAUUUGACCCCUAUGCAUCACCAGCUUCCCGG2000000006ACCAGGGGCCACACUCAGUCCCAUGGGUACCAAUGCAGUCACCAGCCAUCUCAAUCAGUCCCCAGCUUCUCUUUCCACCCAGGGAUAUGGAGCUUCAAGCUUGGGUUUUAACUCAACCACUGAUUGCUUGGAUUAUAAGGACCAAACUGCCUCCUGGAAGCUUAACUUCAAUGCUGACUGCUUGGAUUAUAAAGAUCAGACAUCCUCGUGGAAAUUCCAGGUUUUGUGAAGACCUGUAGAACCUCUUUUUGUGGGUGAUUUUUAAAUAUACUGGGCUGGACAUUCCAGUUUUAGCCAGGCAUUGGUUAAAAGAGUUAGAUGGGAUGAUGCUCAGACUCAUCUGAUCAAAGUUCCGAGAGGCAUAGAAGGAAAAACGAAGGGCCUUAGAGGGGCCUACAAACCAGCAACAUGAAAUGGACAAACCAAUCUGCUUAAGAUCCUGUCAUAGUUUUAGAUCAUUGGUUAUCCUGAUUUGCAAAGUGAUCAAAAGCAUUCUAGCCAUGUGCAACCAAACACCACCAAAAAUAAAAUCAAACAAAACUAAGUUGUGAAGGAAGGGAGGGAAGGUCAUAGCCUUCUUAAGCAGAGGUGUUCCAUUGUUUUAGCCAAUCCUUGGUUGAAUCUUAGGAAUGA2000000006ACAGUGUCUCAAGCUCAUUCACGUUUCAUGACCAACUGGUAGUUGGCACUGAAAAAACUUUUCAGGGCUGUGUGAAUUGUGUGACUGAUUGUCCUAGAUGCACUACU2000000009UUAUUUAAAAAAUAAUGUUCAUAAGGAGUCAAUAUGUAGUUUAAGAGACAAUCAGUGUGUGUCUUAUAAAUGGUACAUCUGUGGUUUUUAAUCUGUGCUAGACUUCAAAACUGUGAUCUCCUGUUAUUGUAUGCAACCUUGAACUCCACCUCUGCAGGGGUUCUUCUGUGAUUAAAUAGGUUAUAAUUAUAAGCAAAAUUCAGAGCAACUGAGUACUGAUCUAAAAAGAUUACCUUUGGCUGGAGGUGAGCUGCACUGAAACU2000000009UUACGACAAAAUGUCUCUGGACAAAGAGAGUCAGAGAAGAGAAGCAAAAGG2000000006ACACUAAUUCAUCUGUAAUUUACUGUUGGUAAGCCUAGCAGUAAAGAGACAUUGGUCAAUUGCUCUGACCCUGAUGAAUUAUUAAACUGAGAUCAUUGUCGUUUAUGCUUGCAGAUGUUAAAUGGAAAAGUUAUAUAUGCAUAAACCUUUUCUUCCUGGAUUUGGCAGAUAUGUAUAAUUAUAUUAAAAUGGUUCUAGCACAACAUUGGGUCCAGUUUAAUUUUACACCGCUAUUUAUGAAUAAGAAGCCUACAUUCAGCCUUUCCUCCCCAAAACACGUUUUUCUUAGGACAGAGAGUAAAUUAGCAAACUUAUUUUUACUUUUUUUUUUUGCUAAUCUAUGCAUAAAAUAGAUAUGAAUGACAGUGGUAGGUAGACUUUUUGUGACUUUCAUCAGGAUUGCUCUGAAAUUGAGUUUGGAGAGCCUAACAACAAGAUCUUGUUUUCCUUGCUUUUCCCUCCCUACUUCAAACCUGAACGAUUUCUUAGGCACUUUAUUAGAAUGUUUUAAAAUAUAUCAAGUUUUUAAGAGGGAGGAGGAGAAUUGGAGUAUCUCUGAAAACAUGAGAAUGACAAGAAUUUCUUGUUACUAUUCUCUUAUUUGAUUAAGGGGAUUUUUUUUUUUUAACUUCCAAAAACUGAGGUAAACAUGAGAGGGAGUGUAAUCAGAAUCUGAAAGUAAUUCAGGCAGAAAUGAUUCCUGAACAAAAGAGUUUCAGAAAAGUUUUAAAACCUAUAAUUUCAGUAGUUGAACAUAAGGCACCCUGGUCAGUUUGUGUGUAUGUGUUUAAGAAAGUGCCGAGGGGGAAAAAAUGGGUCCCUUUUCAGUUGUACCUGCAUUUUGUAAACCAGUCACCAGAAAAGACAAAUGGGCCAAUGAUCAUGGUGCUCCUCAGGUAAAAGCAAUAUUUAAUUUCAUUUUAAGCUGCUUAAGCUCUUACAGCUGACCAAAAUUAAGUGACUCUUGAUUGUAACGUUUUAAAUGAAGGUUAGCAGUUGCAACCA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	910	953	1586	1693	1956	2007
Modification Positions	m6A	m6A	m6A	Y	Y	m6A
Genomic Coordinates	14:56802006:-	14:56801963:-	14:56801330:-	14:56801223:-	14:56800960:-	14:56800909:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL	msuJfBpJvM5H VyCX26p5UBRL eGNFqdoGxzRm	msuJfBpJvM5H VyCX26p5UBRL eGNFqdoGxzRm kx7BHU7ZycYE	eGNFqdoGxzRm kx7BHU7ZycYE	eGNFqdoGxzRm kx7BHU7ZycYE	eGNFqdoGxzRm kx7BHU7ZycYE