General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000455393
Gene ID:	ENSG00000092203
Gene Name:	TOX4
Sequence (UNICHARACTER ENCODING)	AGUGACGGCAGUUCCGAGUCCAGUGGGGGCGGUGGGAGCGAUGAGGGUCUGAGACGGUGGGAGCGGUUGUGUGAAGAUGGAGUUUCCCGGAGGAAAUGACAAUUACCUGACGAUCACAGGGCCUUCGCACCCCUUCCUGUCAGGGGCCGAGACAUUCCAUACACCAAGCUUGGGUGAUGAGGAAUUUGAAAUCCCACCUAUCUCCUUGGAUUCUGAUCCCUCAUUGGCUGUCUCAGAUGUGGUUGGCCACUUUGAUGACCUGGCAGACCCUUCCUCUUCACAGGAUGGCAGUUUUUCAGCCCAGACUUGGACCACUCUAUAGGAACUCAGUAUAGUGCCAACCCACCUGUUACAAUUGAUGUACCAAUGACAGACAUGACAUCUGGCUUGAUGGGGCAUAGCCAGUUGACCACCAUUGAUCAGUCAGAACUGAGUUCCCAGCUGGGUUUGAGCCUAGGGGGUGGCACCAUCCUGCCACCUGCCCAGUCACCUGAAGAUCGUCUUUCAACCACCCCUUCACCUACUAGUUCACUUCACGAGGAUGGUGUUGAGGAUUUCCGGAGGCAACUUCCCAGCCAGAAGACAGUCGUGGUGGAAGCAGGGAAAAAGCAGAAGGCCCCAAAGAAGAGAAAAAAGAAAGAUCCUAAUGAACCUCAGAAACCAGUUUCAGCAUAUGCUPUAUUCUUUCGUGAUACACAGGCUGCCAUCAAGGGЖCAGAAUCCUAAUGCCACUUUUGGUGAGGUUUCAAAAAUUGUGGCCUCCAUGUGGGAUAGUCUUGGAGAGGAGCAAAAACAGGUAUAUAAGAGGAAAACUGAGGCUGCCAAGAAAGAGUAUCUGAAGGCACUGGCUGCUUACAAAGACAACCAGGAGUGUCAGGCCACUGUGGAAACAGUGGAAUUGGAUCCAGCACCACCAUCACAAACUCCUUCUCCACCPCCUAUGGCUACUGUUGACCCAGCAUCUCCAGCACCAGCUUCAAUAGAGCCCCCUGCCCUGUCCCCAPCCAUUGUUGUUAЖCUCCACCCUUUCAPCCUAUGUGGCAAЖCCAGGCAUCUUCUGGAGCUGGGGGUCAGCCCAAUAUCACCAAGUUGAUUAUUACCAAACAAAUGUUGCCCUCUUCUAUUACUAUGUCUCAAGGAGGGAUGGUUACUGUUAUCCCAGCCACAGUGGUGACCUCCCGGGGGCUCCAACUAGGCCAAACCAGUACAGCUACUAUCCAGCCCAGUCAACAAGCCCAGAUUGUCACUCGGUCAGUGUUGCAGGCAGCAGCAGCUGCUGCUGCUGCUGCUUCUAUGCAACUGCCUCCACCCCGACUACAGCCCCCUCCAUUACAACAGAUGCCACAGCCCCCGACUCAGCAGCAAGUUACCAUUCUGCAGCAGCCUCCUCCACUCCAGGCCAUGCAACAGCCPCCACCUCAGAAAGUUCGAAUCAAUUUACAGCAACAGCCUCCUCCUCUGCAGAUCAAGAGUGUGCCUCUACCCACUUUGAAAAUGCAGACUACCUUAGUCCCACCAACUGUGGAAAGUAGUCCUGAGCGGCCUAUGAACAACAGCCCUGAGGCCCAUACAGUGGAGGCACCUUCUCCUGAGACUAUCUGUGAGAUGAUCACAGAUGUAGUUCCUGAGGUUGAGUCUCCUUCUCAGAUGGAUGUUGAAUUGGUGAGUGGGUCUCCUGUGGCACUCUCACCCCAGCCUCGAUGUGUGAGGUCUGGUUGUGAGAACCCUCCCAUUGUGAGUAAGGЖCUGGGACAAUGAAUACUGCAGCAAUGAGUGUGUGGUGAAGCACUGCAGGGAUGUAUUCUUGGCCUGGGUAGCCUCUAGAAAUUCAAACACAGUGGUGUUUGUGAAAUAGUCCUUCCUGUUCUCCAAGCCAGUGAAGAGUUAUCUGCUGGGAAAGUGUCCAAGAGCCUGUUUUUGAAACACAAGCUGGGCUUCUGGUAGUGCCUCAUCACAACCCAUGAUGGCUGUUCAUGUUUCACCCCUUUUCUUCCUUCAGCAGAG
Sequence (SHORT NAMES ENCODING)	AGUGACGGCAGUUCCGAGUCCAGUGGGGGCGGUGGGAGCGAUGAGGGUCUGAGACGGUGGGAGCGGUUGUGUGAAGAUGGAGUUUCCCGGAGGAAAUGACAAUUACCUGACGAUCACAGGGCCUUCGCACCCCUUCCUGUCAGGGGCCGAGACAUUCCAUACACCAAGCUUGGGUGAUGAGGAAUUUGAAAUCCCACCUAUCUCCUUGGAUUCUGAUCCCUCAUUGGCUGUCUCAGAUGUGGUUGGCCACUUUGAUGACCUGGCAGACCCUUCCUCUUCACAGGAUGGCAGUUUUUCAGCCCAGACUUGGACCACUCUAUAGGAACUCAGUAUAGUGCCAACCCACCUGUUACAAUUGAUGUACCAAUGACAGACAUGACAUCUGGCUUGAUGGGGCAUAGCCAGUUGACCACCAUUGAUCAGUCAGAACUGAGUUCCCAGCUGGGUUUGAGCCUAGGGGGUGGCACCAUCCUGCCACCUGCCCAGUCACCUGAAGAUCGUCUUUCAACCACCCCUUCACCUACUAGUUCACUUCACGAGGAUGGUGUUGAGGAUUUCCGGAGGCAACUUCCCAGCCAGAAGACAGUCGUGGUGGAAGCAGGGAAAAAGCAGAAGGCCCCAAAGAAGAGAAAAAAGAAAGAUCCUAAUGAACCUCAGAAACCAGUUUCAGCAUAUGCUYUAUUCUUUCGUGAUACACAGGCUGCCAUCAAGGGm6ACAGAAUCCUAAUGCCACUUUUGGUGAGGUUUCAAAAAUUGUGGCCUCCAUGUGGGAUAGUCUUGGAGAGGAGCAAAAACAGGUAUAUAAGAGGAAAACUGAGGCUGCCAAGAAAGAGUAUCUGAAGGCACUGGCUGCUUACAAAGACAACCAGGAGUGUCAGGCCACUGUGGAAACAGUGGAAUUGGAUCCAGCACCACCAUCACAAACUCCUUCUCCACCYCCUAUGGCUACUGUUGACCCAGCAUCUCCAGCACCAGCUUCAAUAGAGCCCCCUGCCCUGUCCCCAYCCAUUGUUGUUAm6ACUCCACCCUUUCAYCCUAUGUGGCAAm6ACCAGGCAUCUUCUGGAGCUGGGGGUCAGCCCAAUAUCACCAAGUUGAUUAUUACCAAACAAAUGUUGCCCUCUUCUAUUACUAUGUCUCAAGGAGGGAUGGUUACUGUUAUCCCAGCCACAGUGGUGACCUCCCGGGGGCUCCAACUAGGCCAAACCAGUACAGCUACUAUCCAGCCCAGUCAACAAGCCCAGAUUGUCACUCGGUCAGUGUUGCAGGCAGCAGCAGCUGCUGCUGCUGCUGCUUCUAUGCAACUGCCUCCACCCCGACUACAGCCCCCUCCAUUACAACAGAUGCCACAGCCCCCGACUCAGCAGCAAGUUACCAUUCUGCAGCAGCCUCCUCCACUCCAGGCCAUGCAACAGCCYCCACCUCAGAAAGUUCGAAUCAAUUUACAGCAACAGCCUCCUCCUCUGCAGAUCAAGAGUGUGCCUCUACCCACUUUGAAAAUGCAGACUACCUUAGUCCCACCAACUGUGGAAAGUAGUCCUGAGCGGCCUAUGAACAACAGCCCUGAGGCCCAUACAGUGGAGGCACCUUCUCCUGAGACUAUCUGUGAGAUGAUCACAGAUGUAGUUCCUGAGGUUGAGUCUCCUUCUCAGAUGGAUGUUGAAUUGGUGAGUGGGUCUCCUGUGGCACUCUCACCCCAGCCUCGAUGUGUGAGGUCUGGUUGUGAGAACCCUCCCAUUGUGAGUAAGGm6ACUGGGACAAUGAAUACUGCAGCAAUGAGUGUGUGGUGAAGCACUGCAGGGAUGUAUUCUUGGCCUGGGUAGCCUCUAGAAAUUCAAACACAGUGGUGUUUGUGAAAUAGUCCUUCCUGUUCUCCAAGCCAGUGAAGAGUUAUCUGCUGGGAAAGUGUCCAAGAGCCUGUUUUUGAAACACAAGCUGGGCUUCUGGUAGUGCCUCAUCACAACCCAUGAUGGCUGUUCAUGUUUCACCCCUUUUCUUCCUUCAGCAGAG
Sequence (MODOMICS CODE ENCODING)	AGUGACGGCAGUUCCGAGUCCAGUGGGGGCGGUGGGAGCGAUGAGGGUCUGAGACGGUGGGAGCGGUUGUGUGAAGAUGGAGUUUCCCGGAGGAAAUGACAAUUACCUGACGAUCACAGGGCCUUCGCACCCCUUCCUGUCAGGGGCCGAGACAUUCCAUACACCAAGCUUGGGUGAUGAGGAAUUUGAAAUCCCACCUAUCUCCUUGGAUUCUGAUCCCUCAUUGGCUGUCUCAGAUGUGGUUGGCCACUUUGAUGACCUGGCAGACCCUUCCUCUUCACAGGAUGGCAGUUUUUCAGCCCAGACUUGGACCACUCUAUAGGAACUCAGUAUAGUGCCAACCCACCUGUUACAAUUGAUGUACCAAUGACAGACAUGACAUCUGGCUUGAUGGGGCAUAGCCAGUUGACCACCAUUGAUCAGUCAGAACUGAGUUCCCAGCUGGGUUUGAGCCUAGGGGGUGGCACCAUCCUGCCACCUGCCCAGUCACCUGAAGAUCGUCUUUCAACCACCCCUUCACCUACUAGUUCACUUCACGAGGAUGGUGUUGAGGAUUUCCGGAGGCAACUUCCCAGCCAGAAGACAGUCGUGGUGGAAGCAGGGAAAAAGCAGAAGGCCCCAAAGAAGAGAAAAAAGAAAGAUCCUAAUGAACCUCAGAAACCAGUUUCAGCAUAUGCU2000000009UUAUUCUUUCGUGAUACACAGGCUGCCAUCAAGGG2000000006ACAGAAUCCUAAUGCCACUUUUGGUGAGGUUUCAAAAAUUGUGGCCUCCAUGUGGGAUAGUCUUGGAGAGGAGCAAAAACAGGUAUAUAAGAGGAAAACUGAGGCUGCCAAGAAAGAGUAUCUGAAGGCACUGGCUGCUUACAAAGACAACCAGGAGUGUCAGGCCACUGUGGAAACAGUGGAAUUGGAUCCAGCACCACCAUCACAAACUCCUUCUCCACC2000000009UCCUAUGGCUACUGUUGACCCAGCAUCUCCAGCACCAGCUUCAAUAGAGCCCCCUGCCCUGUCCCCA2000000009UCCAUUGUUGUUA2000000006ACUCCACCCUUUCA2000000009UCCUAUGUGGCAA2000000006ACCAGGCAUCUUCUGGAGCUGGGGGUCAGCCCAAUAUCACCAAGUUGAUUAUUACCAAACAAAUGUUGCCCUCUUCUAUUACUAUGUCUCAAGGAGGGAUGGUUACUGUUAUCCCAGCCACAGUGGUGACCUCCCGGGGGCUCCAACUAGGCCAAACCAGUACAGCUACUAUCCAGCCCAGUCAACAAGCCCAGAUUGUCACUCGGUCAGUGUUGCAGGCAGCAGCAGCUGCUGCUGCUGCUGCUUCUAUGCAACUGCCUCCACCCCGACUACAGCCCCCUCCAUUACAACAGAUGCCACAGCCCCCGACUCAGCAGCAAGUUACCAUUCUGCAGCAGCCUCCUCCACUCCAGGCCAUGCAACAGCC2000000009UCCACCUCAGAAAGUUCGAAUCAAUUUACAGCAACAGCCUCCUCCUCUGCAGAUCAAGAGUGUGCCUCUACCCACUUUGAAAAUGCAGACUACCUUAGUCCCACCAACUGUGGAAAGUAGUCCUGAGCGGCCUAUGAACAACAGCCCUGAGGCCCAUACAGUGGAGGCACCUUCUCCUGAGACUAUCUGUGAGAUGAUCACAGAUGUAGUUCCUGAGGUUGAGUCUCCUUCUCAGAUGGAUGUUGAAUUGGUGAGUGGGUCUCCUGUGGCACUCUCACCCCAGCCUCGAUGUGUGAGGUCUGGUUGUGAGAACCCUCCCAUUGUGAGUAAGG2000000006ACUGGGACAAUGAAUACUGCAGCAAUGAGUGUGUGGUGAAGCACUGCAGGGAUGUAUUCUUGGCCUGGGUAGCCUCUAGAAAUUCAAACACAGUGGUGUUUGUGAAAUAGUCCUUCCUGUUCUCCAAGCCAGUGAAGAGUUAUCUGCUGGGAAAGUGUCCAAGAGCCUGUUUUUGAAACACAAGCUGGGCUUCUGGUAGUGCCUCAUCACAACCCAUGAUGGCUGUUCAUGUUUCACCCCUUUUCUUCCUUCAGCAGAG

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	679	714	936	1003	1016	1030	1043	1410	1742
Modification Positions	Y	m6A	Y	Y	m6A	Y	m6A	Y	m6A
Genomic Coordinates	14:21489287:+	14:21489322:+	14:21492567:+	14:21492634:+	14:21492647:+	14:21492661:+	14:21492674:+	14:21493041:+	14:21495344:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	6UuHp6YApVKv jNkxUQNx8GRd QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn KTLz8piFYdwC WiQcrNTGZHPT BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 f6YSioLdAWpr Yfn77uLS5tv8	4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw KTLz8piFYdwC WiQcrNTGZHPT KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Mk6ShCGm6RBJ iezFbUdmY3A6 JkWoGWVwjNda Yfn77uLS5tv8