Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000334553
Gene ID: ENSG00000126214
Gene Name: KLC1
Sequence (UNICHARACTER ENCODING) AUUUUCGGCGGCGGGAGCGGCGCAGGCGGCCGAGCGGGACUGGCUGGGUCGGCUGGGCUGCUGGUGCGAGGAGCCGCGGGGCUGUGCUCGGCGGCCAAGGGGACAGCGCGUGGGUGGCCGAGGAUGCUGCGGGGCGGUAGCUCCGGCGCCCCUAGCUGGUGACUGCUGCGCCGUGCCUCACACAGCCGAGGCGGGCUCGGCGCACAGUCGCUGCUCCGCGCGCGCGCCCGGCGGCGCUCCAGGUGCUGACAGCGCGAGAGAGCGCGGCCCUCAGGAGCAAGGCGAAUGUAUGACAACAUGUCCACAAUGGUGUACAUAAAGGAAGACAAGUUGGAGAAGCUUACACAGGAUGAAAUUAUUUCUAAGACAAAGCAAGUAAUUCAGGGGCUGGAAGCUUUGAAGAAUGAGCACAAUUCCAUUUUACAAAGUUUGCUGGAGACACUGAAGUGUUUGAAGAAAGAUGAUGAAAGUAAUUUGGUGGAGGAGAAAUCAAACAUGAUCCGGAAGUCACUGGAGAUGUUGGAGCUCGGCCUGAGUGAGGCACAGGUUAUGAUGGCUUUGUCAAAUCACCUGAAUGCUGUGGAGUCCGAGAAGCAGAAACUGCGUGCGCAGGUUCGUCGUCUGUGCCAGGAGAAUCAGUGGCUACGGGAUGAACUGGCCAACACGCAGCAGAAACUGCAGAAGAGUGAGCAGUCUGUGGCUCAACUGGAGGAGGAGAAGAAGCAUCUGGAGUUUAUGAAUCAGCUAAAAAAAUAUGAUGACGACAUUUCCCCAPCCGAGGACAAAGACACUGAUUCUACCAAAGAGCCUCUGGAUGACCUUUUCCCCAAUGAUGAAGACGACCCAGGGCAAGGAAUCCAGCAGCAGCACAGCAGUGCAGCCGCGGCUGCCCAGCAGGGCGGCUACGAGAUCCCCGCGCGGCUGCGGACGCUCCACAACCUGGUGAUCCAGUACGCCUCGCAGGGGCGCUACGAGGUAGCUGUGCCCCUCUGCAAGCAGGCCCUGGAGGACCUGGAGAAGACUUCAGGACACGACCACCCGGACGUGGCCACCAUGCUCAACAPCCUGGCCUUGGUGUACAGGGAUCAGAAUAAAUACAAAGAUGCAGCUAACCUACUGAAUGAUGCCUUGGCUAUUCGUGAGAAAACUUUGGGCAAAGAUCAPCCUGCGGUGGCGGCGACUUUGAAUAACCUUGCAGUCCUPUAUGGUAAAAGAGGGAAGUACAAAGAAGCAGAGCCGUUGUGUAAAAGAGCUCUGGAAAUCCGAGAAAAGGUUUUGGGGAAGGAUCACCCCGAUGUUGCCAAGCAGUUAAAUAЖCUUGGCCUUACUGUGCCAGAACCAGGGCAAGUAUGAAGAAGUAGAAUAUUAUUAUCAAAGAGCCCUCGAGAUCUACCAGACAAAACUGGGACCUGAUGACCCCAACGUGGCUAAGACGAAAAAUAACCUGGCAPCCUGCUAUUUGAAACAAGGAAAGUUCAAGCAAGCAGAAACACUGUACAAAGAGAUUCUCACUCGUGCACAUGAAAGGGAGUUUGGUUCUGUAGAUGAUGAAAAUAAACCCAUCUGGAUGCAUGCUGAAGAAAGAGAAGAAUGCAAAGGAAAGCAAAAGGAUGGGACAUCUUUUGGAGAGUAUGGCGGCUGGUACAAAGCCUGCAAAGUUGAUAGUCCAACUGUUACAACCACUCUAAAAAACCUUGGGGCACUPUACAGACGUCAAGGCAAAUUUGAAGCUGCAGAAACGUUAGAAGAAGCUGCUAUGAGGUCUCGUAAЖCAGGGUCUUGACAAUGUUCACAAЖCAGAGGGUGGCAGAAGUGCUCAAUGACCCUGAGAACAUGGAGAAGCGCAGGAGCCGUGAGAGCCUCAACGUGGACGUGGUCAAGUACGAGAGUGGCCCUGACGGAGGGGAGGAAGUGAGUAUGAGCGUAGAGUGGAACGGGGAUGGCACUGGAUCUPUAAAACGCAGUGGUUCCUPUAGCAAACUCCGGGCUUCCAUUAGACGCAGCAGUGAGAAGCUGGUUAGGAAGCUGAAGGGAGGAAGUUCACGAGAGAGUGAGCCAAAGAACCCCGGCAUGAAGCGUGCCAGCUCUCUGAAUGUCCUUAACGUGGGUGGCAAGGCUGCUGAAGAUCGCUUUCAAGGCGUCUCUGGCCGAGCCUCUUUUUGUGGAAAACGACAGCAGCAGCAGUGGCCUGGAAGACGCCACCGCUAACUGACCCCGACCUGGCCCCGCUCCAGGAUGGGACUGCCGAGUGUGGCCCGGAGCUGGCCCGGGACAGCCAGGGCGGCAGGGAGGGCCCCUGGCCGGGAGCCGCAGCGCUCACUCAUUUCUCCUGCGUCUGUGUGCAUAGGACAUGAUACUAAUAACCACACGGCUGGCGUGЖCCUUGGGGCUGGGGCUGGGCCUAAGCUGGUGCCCUGGUGCGGCGUGGUCUCUCCCAGGAGЖCCUGGGGCAUGAGCUGGGCCCACGGCUCCCUUCCCAUGUGUAЖCUUCCUCACGUUGUGUGCGAUAACGUAUUUUAUUGUACAUUUUUUUAAAUUAAAAGUUUAUAUGCCUUA
Sequence (SHORT NAMES ENCODING) AUUUUCGGCGGCGGGAGCGGCGCAGGCGGCCGAGCGGGACUGGCUGGGUCGGCUGGGCUGCUGGUGCGAGGAGCCGCGGGGCUGUGCUCGGCGGCCAAGGGGACAGCGCGUGGGUGGCCGAGGAUGCUGCGGGGCGGUAGCUCCGGCGCCCCUAGCUGGUGACUGCUGCGCCGUGCCUCACACAGCCGAGGCGGGCUCGGCGCACAGUCGCUGCUCCGCGCGCGCGCCCGGCGGCGCUCCAGGUGCUGACAGCGCGAGAGAGCGCGGCCCUCAGGAGCAAGGCGAAUGUAUGACAACAUGUCCACAAUGGUGUACAUAAAGGAAGACAAGUUGGAGAAGCUUACACAGGAUGAAAUUAUUUCUAAGACAAAGCAAGUAAUUCAGGGGCUGGAAGCUUUGAAGAAUGAGCACAAUUCCAUUUUACAAAGUUUGCUGGAGACACUGAAGUGUUUGAAGAAAGAUGAUGAAAGUAAUUUGGUGGAGGAGAAAUCAAACAUGAUCCGGAAGUCACUGGAGAUGUUGGAGCUCGGCCUGAGUGAGGCACAGGUUAUGAUGGCUUUGUCAAAUCACCUGAAUGCUGUGGAGUCCGAGAAGCAGAAACUGCGUGCGCAGGUUCGUCGUCUGUGCCAGGAGAAUCAGUGGCUACGGGAUGAACUGGCCAACACGCAGCAGAAACUGCAGAAGAGUGAGCAGUCUGUGGCUCAACUGGAGGAGGAGAAGAAGCAUCUGGAGUUUAUGAAUCAGCUAAAAAAAUAUGAUGACGACAUUUCCCCAYCCGAGGACAAAGACACUGAUUCUACCAAAGAGCCUCUGGAUGACCUUUUCCCCAAUGAUGAAGACGACCCAGGGCAAGGAAUCCAGCAGCAGCACAGCAGUGCAGCCGCGGCUGCCCAGCAGGGCGGCUACGAGAUCCCCGCGCGGCUGCGGACGCUCCACAACCUGGUGAUCCAGUACGCCUCGCAGGGGCGCUACGAGGUAGCUGUGCCCCUCUGCAAGCAGGCCCUGGAGGACCUGGAGAAGACUUCAGGACACGACCACCCGGACGUGGCCACCAUGCUCAACAYCCUGGCCUUGGUGUACAGGGAUCAGAAUAAAUACAAAGAUGCAGCUAACCUACUGAAUGAUGCCUUGGCUAUUCGUGAGAAAACUUUGGGCAAAGAUCAYCCUGCGGUGGCGGCGACUUUGAAUAACCUUGCAGUCCUYUAUGGUAAAAGAGGGAAGUACAAAGAAGCAGAGCCGUUGUGUAAAAGAGCUCUGGAAAUCCGAGAAAAGGUUUUGGGGAAGGAUCACCCCGAUGUUGCCAAGCAGUUAAAUAm6ACUUGGCCUUACUGUGCCAGAACCAGGGCAAGUAUGAAGAAGUAGAAUAUUAUUAUCAAAGAGCCCUCGAGAUCUACCAGACAAAACUGGGACCUGAUGACCCCAACGUGGCUAAGACGAAAAAUAACCUGGCAYCCUGCUAUUUGAAACAAGGAAAGUUCAAGCAAGCAGAAACACUGUACAAAGAGAUUCUCACUCGUGCACAUGAAAGGGAGUUUGGUUCUGUAGAUGAUGAAAAUAAACCCAUCUGGAUGCAUGCUGAAGAAAGAGAAGAAUGCAAAGGAAAGCAAAAGGAUGGGACAUCUUUUGGAGAGUAUGGCGGCUGGUACAAAGCCUGCAAAGUUGAUAGUCCAACUGUUACAACCACUCUAAAAAACCUUGGGGCACUYUACAGACGUCAAGGCAAAUUUGAAGCUGCAGAAACGUUAGAAGAAGCUGCUAUGAGGUCUCGUAAm6ACAGGGUCUUGACAAUGUUCACAAm6ACAGAGGGUGGCAGAAGUGCUCAAUGACCCUGAGAACAUGGAGAAGCGCAGGAGCCGUGAGAGCCUCAACGUGGACGUGGUCAAGUACGAGAGUGGCCCUGACGGAGGGGAGGAAGUGAGUAUGAGCGUAGAGUGGAACGGGGAUGGCACUGGAUCUYUAAAACGCAGUGGUUCCUYUAGCAAACUCCGGGCUUCCAUUAGACGCAGCAGUGAGAAGCUGGUUAGGAAGCUGAAGGGAGGAAGUUCACGAGAGAGUGAGCCAAAGAACCCCGGCAUGAAGCGUGCCAGCUCUCUGAAUGUCCUUAACGUGGGUGGCAAGGCUGCUGAAGAUCGCUUUCAAGGCGUCUCUGGCCGAGCCUCUUUUUGUGGAAAACGACAGCAGCAGCAGUGGCCUGGAAGACGCCACCGCUAACUGACCCCGACCUGGCCCCGCUCCAGGAUGGGACUGCCGAGUGUGGCCCGGAGCUGGCCCGGGACAGCCAGGGCGGCAGGGAGGGCCCCUGGCCGGGAGCCGCAGCGCUCACUCAUUUCUCCUGCGUCUGUGUGCAUAGGACAUGAUACUAAUAACCACACGGCUGGCGUGm6ACCUUGGGGCUGGGGCUGGGCCUAAGCUGGUGCCCUGGUGCGGCGUGGUCUCUCCCAGGAGm6ACCUGGGGCAUGAGCUGGGCCCACGGCUCCCUUCCCAUGUGUAm6ACUUCCUCACGUUGUGUGCGAUAACGUAUUUUAUUGUACAUUUUUUUAAAUUAAAAGUUUAUAUGCCUUA
Sequence (MODOMICS CODE ENCODING) AUUUUCGGCGGCGGGAGCGGCGCAGGCGGCCGAGCGGGACUGGCUGGGUCGGCUGGGCUGCUGGUGCGAGGAGCCGCGGGGCUGUGCUCGGCGGCCAAGGGGACAGCGCGUGGGUGGCCGAGGAUGCUGCGGGGCGGUAGCUCCGGCGCCCCUAGCUGGUGACUGCUGCGCCGUGCCUCACACAGCCGAGGCGGGCUCGGCGCACAGUCGCUGCUCCGCGCGCGCGCCCGGCGGCGCUCCAGGUGCUGACAGCGCGAGAGAGCGCGGCCCUCAGGAGCAAGGCGAAUGUAUGACAACAUGUCCACAAUGGUGUACAUAAAGGAAGACAAGUUGGAGAAGCUUACACAGGAUGAAAUUAUUUCUAAGACAAAGCAAGUAAUUCAGGGGCUGGAAGCUUUGAAGAAUGAGCACAAUUCCAUUUUACAAAGUUUGCUGGAGACACUGAAGUGUUUGAAGAAAGAUGAUGAAAGUAAUUUGGUGGAGGAGAAAUCAAACAUGAUCCGGAAGUCACUGGAGAUGUUGGAGCUCGGCCUGAGUGAGGCACAGGUUAUGAUGGCUUUGUCAAAUCACCUGAAUGCUGUGGAGUCCGAGAAGCAGAAACUGCGUGCGCAGGUUCGUCGUCUGUGCCAGGAGAAUCAGUGGCUACGGGAUGAACUGGCCAACACGCAGCAGAAACUGCAGAAGAGUGAGCAGUCUGUGGCUCAACUGGAGGAGGAGAAGAAGCAUCUGGAGUUUAUGAAUCAGCUAAAAAAAUAUGAUGACGACAUUUCCCCA2000000009UCCGAGGACAAAGACACUGAUUCUACCAAAGAGCCUCUGGAUGACCUUUUCCCCAAUGAUGAAGACGACCCAGGGCAAGGAAUCCAGCAGCAGCACAGCAGUGCAGCCGCGGCUGCCCAGCAGGGCGGCUACGAGAUCCCCGCGCGGCUGCGGACGCUCCACAACCUGGUGAUCCAGUACGCCUCGCAGGGGCGCUACGAGGUAGCUGUGCCCCUCUGCAAGCAGGCCCUGGAGGACCUGGAGAAGACUUCAGGACACGACCACCCGGACGUGGCCACCAUGCUCAACA2000000009UCCUGGCCUUGGUGUACAGGGAUCAGAAUAAAUACAAAGAUGCAGCUAACCUACUGAAUGAUGCCUUGGCUAUUCGUGAGAAAACUUUGGGCAAAGAUCA2000000009UCCUGCGGUGGCGGCGACUUUGAAUAACCUUGCAGUCCU2000000009UUAUGGUAAAAGAGGGAAGUACAAAGAAGCAGAGCCGUUGUGUAAAAGAGCUCUGGAAAUCCGAGAAAAGGUUUUGGGGAAGGAUCACCCCGAUGUUGCCAAGCAGUUAAAUA2000000006ACUUGGCCUUACUGUGCCAGAACCAGGGCAAGUAUGAAGAAGUAGAAUAUUAUUAUCAAAGAGCCCUCGAGAUCUACCAGACAAAACUGGGACCUGAUGACCCCAACGUGGCUAAGACGAAAAAUAACCUGGCA2000000009UCCUGCUAUUUGAAACAAGGAAAGUUCAAGCAAGCAGAAACACUGUACAAAGAGAUUCUCACUCGUGCACAUGAAAGGGAGUUUGGUUCUGUAGAUGAUGAAAAUAAACCCAUCUGGAUGCAUGCUGAAGAAAGAGAAGAAUGCAAAGGAAAGCAAAAGGAUGGGACAUCUUUUGGAGAGUAUGGCGGCUGGUACAAAGCCUGCAAAGUUGAUAGUCCAACUGUUACAACCACUCUAAAAAACCUUGGGGCACU2000000009UUACAGACGUCAAGGCAAAUUUGAAGCUGCAGAAACGUUAGAAGAAGCUGCUAUGAGGUCUCGUAA2000000006ACAGGGUCUUGACAAUGUUCACAA2000000006ACAGAGGGUGGCAGAAGUGCUCAAUGACCCUGAGAACAUGGAGAAGCGCAGGAGCCGUGAGAGCCUCAACGUGGACGUGGUCAAGUACGAGAGUGGCCCUGACGGAGGGGAGGAAGUGAGUAUGAGCGUAGAGUGGAACGGGGAUGGCACUGGAUCU2000000009UUAAAACGCAGUGGUUCCU2000000009UUAGCAAACUCCGGGCUUCCAUUAGACGCAGCAGUGAGAAGCUGGUUAGGAAGCUGAAGGGAGGAAGUUCACGAGAGAGUGAGCCAAAGAACCCCGGCAUGAAGCGUGCCAGCUCUCUGAAUGUCCUUAACGUGGGUGGCAAGGCUGCUGAAGAUCGCUUUCAAGGCGUCUCUGGCCGAGCCUCUUUUUGUGGAAAACGACAGCAGCAGCAGUGGCCUGGAAGACGCCACCGCUAACUGACCCCGACCUGGCCCCGCUCCAGGAUGGGACUGCCGAGUGUGGCCCGGAGCUGGCCCGGGACAGCCAGGGCGGCAGGGAGGGCCCCUGGCCGGGAGCCGCAGCGCUCACUCAUUUCUCCUGCGUCUGUGUGCAUAGGACAUGAUACUAAUAACCACACGGCUGGCGUG2000000006ACCUUGGGGCUGGGGCUGGGCCUAAGCUGGUGCCCUGGUGCGGCGUGGUCUCUCCCAGGAG2000000006ACCUGGGGCAUGAGCUGGGCCCACGGCUCCCUUCCCAUGUGUA2000000006ACUUCCUCACGUUGUGUGCGAUAACGUAUUUUAUUGUACAUUUUUUUAAAUUAAAAGUUUAUAUGCCUUA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 775 1064 1164 1203 1316 1450 1704 1770 1794 1951 1970 2377 2438 2481
Modification Positions Y Y Y Y m6A Y Y m6A m6A Y Y m6A m6A m6A
Genomic Coordinates 14:103657774:+ 14:103662909:+ 14:103669592:+ 14:103670214:+ 14:103673057:+ 14:103673335:+ 14:103677454:+ 14:103677520:+ 14:103679404:+ 14:103687096:+ 14:103687115:+ 14:103701371:+ 14:103701432:+ 14:103701475:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
dknfVe6BK8aP
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
Yfn77uLS5tv8
5aTkEfEpX8Xm
6AyXsheySjfx
6UuHp6YApVKv
aivdrAsbdKEU
gZuvgwMuBfgh
jNkxUQNx8GRd
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
WiQcrNTGZHPT
BtsJQJ3DteUq
dknfVe6BK8aP
kx7BHU7ZycYE
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
kx7BHU7ZycYE
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
kx7BHU7ZycYE
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8