Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000627697
Gene ID: ENSG00000129534
Gene Name: MIS18BP1
Sequence (UNICHARACTER ENCODING) CAACUAGAGGAGCUCGCCCCCUGCCUGUGACAGCUUAGGGUCGCCUACUUUUUGUGGACACACUGCCGUCCACGGAGUGCAGAGGCCGCCUGCAGUUUUCUUGCGUCCCUGUGAGACGCACGGUGGCGCAAUUCCCGAGCGUGCCAAUCCCGGGCUGGCUGGAGGGCGGGCUCUUCAAAUUUGAAUUGCGGAAGUGUUUUGUGUGUUAGAGAACGUCGCGGAGGAGGUAAGCGUCGCUUGGCGCCUGGCCGCCGCGGGCAGGAUACACCGUGGGCCUGAGGCGCGAGCCCGGCGGCGUGCGGCCCUCUCUCCGCGCGGAGCCGAGCCGGAACUGCGGCAGUCUCUCCCUGCCAGGCUCUUCAUCCAAGGUUUCUGUGGAUCCCUUCUGAAGUUCUAUCUGAAAAUUGCGCUUAAGUGAAUUUUCUGUUAGAAGAЖCUUGGUUGCUACUUUCUUGUCAAGAUGAUUGCAACACCUUUGAAACAUUCAAGAAUUUACUUACCUCCAGAGGCAUCUUCUCAAAGGAGAAAUCUACCCAUGGAUGCAAUCUUUUUUGACAGCAUUCCUUCAGGCACACUUACUCCUGUAAAAGAUUUGGUGAAAUAUCAGAЖCUCCUCCUUAAAAUUGAAUGACCAUAAAAAGAAUCAGUUCCUAAAAAUGЖCAACUUUUAACAAUAAAAAUAUAUUUCAAUCAACUAUGCUAACAGAGGCUACUACCUCUAACAGUUCUCUUGAUAUCAGUGCUAUAAAGCCCAACAAGGAUGGAUUAAAAAAUAAAGCAAACUAUGAAUCACCAGGAAAAAUAUUUCUAAGAAUGAAAGAAAAAGUACUGCGUGACAAGCAAGAACAGCCAUCAAGAAACAGUAGUUUGUUGGAACCACAGAAAAGUGGAAAUAAUGAAACCUUCACUCCUAACAGAGUUGAAAAAAAAAAAUUGCAGCAUACCUACCUAUGUGAAGAAAAGGAAAACAACAAAUCAUUCCAGUCAGAUGACAGUUCACUAAGAGCCUCAGUCCAAGGAGUUCCUCUAGAAUCAUCAAAUAAUGAUAUUUUCCUCCCGGUCAAACAAAAGAUUCAGUGCCAGCAGGAAAAGAAAGCACCACUGCACAAUUUAACUUACGAACUUCCAACUCUGAACCAAGAACAGGAAAAUUUUUUGGCUGUAGAAGCCCGAAЖCAЖGЖCAUUAACUAGAGCUCAGUUGGCUAAACAAAUUUUUCACUCAAAGGAGAGUAUAGUUGCAACCACUAAAUCCAAAAAGGЖCACGUUUGUUUUAGAAAGCGUUGAUUCUGCUGAUGAЖCAAUUUCAAAAUACUAAUGCUGAGЖCUCUCAGUACUAAUUGUAUUCCUAUUAAAAAUGGCAGCCUGUUAAUGGUUUCUGAUAGUGAGAGGACAACAGAAGGGACUUCGCAACAGAAAGUUAAGGAAGGAAAUGGAAAAACAGUGCCUGGAGAGACAGGUCUUCCAGGUUCCAUGAAAGAUACAUGUAAAAUUGUACUUGCAACACCAAGACUUCAUAUAACAAUACCUCGGAGGUCAAAAAGAAAUAUUUCAAAGCUUUCUCCUCCAAGAAUAUUUCAAACUGUUACAAAUGGACUUAAAAAAAAUCAGGUAGUUCAGCUACAGGAAUGGAUGAUUAAAAGCAUCAAUAAUAAUACUGCUAUAUGUGUAGAAGGAAAAUUGAUAGACGUCACUAACAUAUAUUGGCACAGUAAUGUAAUUAUAGAGCGGAUUGAGCACAACAAACUUAGGACUAUAUCAGGCAACGUUUAUAUAUUAAAAGGCAUGAUAGACCAAAUUUCCAUGAAAGAAGCAGGAUAUCCAAAUUAUCUCAUAAGGAAAUUUAUGUUUGGAUUUCCAGAAAAUUGGAAAGAGCACAUUGAUAAUUUUCUGGAACAAUUAAGAGAUGGGGUUUCGUCAUGUUGGCCAGACUGGUCUCGAACUCCUGGCUACAAGUGA
Sequence (SHORT NAMES ENCODING) CAACUAGAGGAGCUCGCCCCCUGCCUGUGACAGCUUAGGGUCGCCUACUUUUUGUGGACACACUGCCGUCCACGGAGUGCAGAGGCCGCCUGCAGUUUUCUUGCGUCCCUGUGAGACGCACGGUGGCGCAAUUCCCGAGCGUGCCAAUCCCGGGCUGGCUGGAGGGCGGGCUCUUCAAAUUUGAAUUGCGGAAGUGUUUUGUGUGUUAGAGAACGUCGCGGAGGAGGUAAGCGUCGCUUGGCGCCUGGCCGCCGCGGGCAGGAUACACCGUGGGCCUGAGGCGCGAGCCCGGCGGCGUGCGGCCCUCUCUCCGCGCGGAGCCGAGCCGGAACUGCGGCAGUCUCUCCCUGCCAGGCUCUUCAUCCAAGGUUUCUGUGGAUCCCUUCUGAAGUUCUAUCUGAAAAUUGCGCUUAAGUGAAUUUUCUGUUAGAAGAm6ACUUGGUUGCUACUUUCUUGUCAAGAUGAUUGCAACACCUUUGAAACAUUCAAGAAUUUACUUACCUCCAGAGGCAUCUUCUCAAAGGAGAAAUCUACCCAUGGAUGCAAUCUUUUUUGACAGCAUUCCUUCAGGCACACUUACUCCUGUAAAAGAUUUGGUGAAAUAUCAGAm6ACUCCUCCUUAAAAUUGAAUGACCAUAAAAAGAAUCAGUUCCUAAAAAUGm6ACAACUUUUAACAAUAAAAAUAUAUUUCAAUCAACUAUGCUAACAGAGGCUACUACCUCUAACAGUUCUCUUGAUAUCAGUGCUAUAAAGCCCAACAAGGAUGGAUUAAAAAAUAAAGCAAACUAUGAAUCACCAGGAAAAAUAUUUCUAAGAAUGAAAGAAAAAGUACUGCGUGACAAGCAAGAACAGCCAUCAAGAAACAGUAGUUUGUUGGAACCACAGAAAAGUGGAAAUAAUGAAACCUUCACUCCUAACAGAGUUGAAAAAAAAAAAUUGCAGCAUACCUACCUAUGUGAAGAAAAGGAAAACAACAAAUCAUUCCAGUCAGAUGACAGUUCACUAAGAGCCUCAGUCCAAGGAGUUCCUCUAGAAUCAUCAAAUAAUGAUAUUUUCCUCCCGGUCAAACAAAAGAUUCAGUGCCAGCAGGAAAAGAAAGCACCACUGCACAAUUUAACUUACGAACUUCCAACUCUGAACCAAGAACAGGAAAAUUUUUUGGCUGUAGAAGCCCGAAm6ACAm6AGm6ACAUUAACUAGAGCUCAGUUGGCUAAACAAAUUUUUCACUCAAAGGAGAGUAUAGUUGCAACCACUAAAUCCAAAAAGGm6ACACGUUUGUUUUAGAAAGCGUUGAUUCUGCUGAUGAm6ACAAUUUCAAAAUACUAAUGCUGAGm6ACUCUCAGUACUAAUUGUAUUCCUAUUAAAAAUGGCAGCCUGUUAAUGGUUUCUGAUAGUGAGAGGACAACAGAAGGGACUUCGCAACAGAAAGUUAAGGAAGGAAAUGGAAAAACAGUGCCUGGAGAGACAGGUCUUCCAGGUUCCAUGAAAGAUACAUGUAAAAUUGUACUUGCAACACCAAGACUUCAUAUAACAAUACCUCGGAGGUCAAAAAGAAAUAUUUCAAAGCUUUCUCCUCCAAGAAUAUUUCAAACUGUUACAAAUGGACUUAAAAAAAAUCAGGUAGUUCAGCUACAGGAAUGGAUGAUUAAAAGCAUCAAUAAUAAUACUGCUAUAUGUGUAGAAGGAAAAUUGAUAGACGUCACUAACAUAUAUUGGCACAGUAAUGUAAUUAUAGAGCGGAUUGAGCACAACAAACUUAGGACUAUAUCAGGCAACGUUUAUAUAUUAAAAGGCAUGAUAGACCAAAUUUCCAUGAAAGAAGCAGGAUAUCCAAAUUAUCUCAUAAGGAAAUUUAUGUUUGGAUUUCCAGAAAAUUGGAAAGAGCACAUUGAUAAUUUUCUGGAACAAUUAAGAGAUGGGGUUUCGUCAUGUUGGCCAGACUGGUCUCGAACUCCUGGCUACAAGUGA
Sequence (MODOMICS CODE ENCODING) CAACUAGAGGAGCUCGCCCCCUGCCUGUGACAGCUUAGGGUCGCCUACUUUUUGUGGACACACUGCCGUCCACGGAGUGCAGAGGCCGCCUGCAGUUUUCUUGCGUCCCUGUGAGACGCACGGUGGCGCAAUUCCCGAGCGUGCCAAUCCCGGGCUGGCUGGAGGGCGGGCUCUUCAAAUUUGAAUUGCGGAAGUGUUUUGUGUGUUAGAGAACGUCGCGGAGGAGGUAAGCGUCGCUUGGCGCCUGGCCGCCGCGGGCAGGAUACACCGUGGGCCUGAGGCGCGAGCCCGGCGGCGUGCGGCCCUCUCUCCGCGCGGAGCCGAGCCGGAACUGCGGCAGUCUCUCCCUGCCAGGCUCUUCAUCCAAGGUUUCUGUGGAUCCCUUCUGAAGUUCUAUCUGAAAAUUGCGCUUAAGUGAAUUUUCUGUUAGAAGA2000000006ACUUGGUUGCUACUUUCUUGUCAAGAUGAUUGCAACACCUUUGAAACAUUCAAGAAUUUACUUACCUCCAGAGGCAUCUUCUCAAAGGAGAAAUCUACCCAUGGAUGCAAUCUUUUUUGACAGCAUUCCUUCAGGCACACUUACUCCUGUAAAAGAUUUGGUGAAAUAUCAGA2000000006ACUCCUCCUUAAAAUUGAAUGACCAUAAAAAGAAUCAGUUCCUAAAAAUG2000000006ACAACUUUUAACAAUAAAAAUAUAUUUCAAUCAACUAUGCUAACAGAGGCUACUACCUCUAACAGUUCUCUUGAUAUCAGUGCUAUAAAGCCCAACAAGGAUGGAUUAAAAAAUAAAGCAAACUAUGAAUCACCAGGAAAAAUAUUUCUAAGAAUGAAAGAAAAAGUACUGCGUGACAAGCAAGAACAGCCAUCAAGAAACAGUAGUUUGUUGGAACCACAGAAAAGUGGAAAUAAUGAAACCUUCACUCCUAACAGAGUUGAAAAAAAAAAAUUGCAGCAUACCUACCUAUGUGAAGAAAAGGAAAACAACAAAUCAUUCCAGUCAGAUGACAGUUCACUAAGAGCCUCAGUCCAAGGAGUUCCUCUAGAAUCAUCAAAUAAUGAUAUUUUCCUCCCGGUCAAACAAAAGAUUCAGUGCCAGCAGGAAAAGAAAGCACCACUGCACAAUUUAACUUACGAACUUCCAACUCUGAACCAAGAACAGGAAAAUUUUUUGGCUGUAGAAGCCCGAA2000000006ACA2000000006AG2000000006ACAUUAACUAGAGCUCAGUUGGCUAAACAAAUUUUUCACUCAAAGGAGAGUAUAGUUGCAACCACUAAAUCCAAAAAGG2000000006ACACGUUUGUUUUAGAAAGCGUUGAUUCUGCUGAUGA2000000006ACAAUUUCAAAAUACUAAUGCUGAG2000000006ACUCUCAGUACUAAUUGUAUUCCUAUUAAAAAUGGCAGCCUGUUAAUGGUUUCUGAUAGUGAGAGGACAACAGAAGGGACUUCGCAACAGAAAGUUAAGGAAGGAAAUGGAAAAACAGUGCCUGGAGAGACAGGUCUUCCAGGUUCCAUGAAAGAUACAUGUAAAAUUGUACUUGCAACACCAAGACUUCAUAUAACAAUACCUCGGAGGUCAAAAAGAAAUAUUUCAAAGCUUUCUCCUCCAAGAAUAUUUCAAACUGUUACAAAUGGACUUAAAAAAAAUCAGGUAGUUCAGCUACAGGAAUGGAUGAUUAAAAGCAUCAAUAAUAAUACUGCUAUAUGUGUAGAAGGAAAAUUGAUAGACGUCACUAACAUAUAUUGGCACAGUAAUGUAAUUAUAGAGCGGAUUGAGCACAACAAACUUAGGACUAUAUCAGGCAACGUUUAUAUAUUAAAAGGCAUGAUAGACCAAAUUUCCAUGAAAGAAGCAGGAUAUCCAAAUUAUCUCAUAAGGAAAUUUAUGUUUGGAUUUCCAGAAAAUUGGAAAGAGCACAUUGAUAAUUUUCUGGAACAAUUAAGAGAUGGGGUUUCGUCAUGUUGGCCAGACUGGUCUCGAACUCCUGGCUACAAGUGA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 435 608 658 1172 1175 1177 1256 1293 1318
Modification Positions m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 14:45247311:- 14:45247138:- 14:45247088:- 14:45242464:- 14:45242461:- 14:45242459:- 14:45242380:- 14:45242343:- 14:45242318:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
LZJKems7W2wi
PF5iqBNSbHaa
UKen6WEino9G
XUkp6ghERQML
BsCW7emuRX7M
KENzb7mwdBd9
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
2CxsF9wZGeaB
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
KRfQJWH4K5KH
Y7p6mwddGvEB
2CxsF9wZGeaB
5Nnepx5V7yHo
6AyXsheySjfx
aHkqKEJkRYyb
KRfQJWH4K5KH
Y7p6mwddGvEB
6UuHp6YApVKv
msuJfBpJvM5H
VyCX26p5UBRL
93arJtwJmuS9
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
Lny8GcCeVGc9
4HMi5ykupT9V
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
PF5iqBNSbHaa
UKen6WEino9G
4HMi5ykupT9V
5aTkEfEpX8Xm
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
KENzb7mwdBd9
KjeH7Nsffuas
Lny8GcCeVGc9
UKen6WEino9G