Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000553375
Gene ID: ENSG00000185650
Gene Name: ZFP36L1
Sequence (UNICHARACTER ENCODING) CACCACCACCUCCAAGCUAAAAUACCUGGGCCGCCCCUCCCCACGAAGGGACGCGCUCCAGGCGAAUGGGGAGGGCCCGGAAGUCGGGCCUGGGACAGAGGAGCCGGCCCACCGCCUCCCGGUCGGAAGCGGCAGUGCAGCC?GGAGUCAGAAAGGCGAGGGGCGCCGGGAACUGGCGUGUGGGACUCCAGACAGGAGAGGCUGCGCCUUCCCCGCACCGGGACCUUCGCGACACACCAGAUCCUCGCCCCUGGCUCGCGCGAACGCACAGGAUGACCACCACCCUCGUGUCUGCCACCAUCUUCGACUUGAGCGAAGUUUUAUGCAAGGGUAACAAGAUGCUCAACUAUAGUGCUCCCAGUGCAGGGGGUUGCCUGCUGGACAGAAAGGCAGUGGGCACCCCUGCUGGUGGGGGCUUCCCUCGGAGGCACUCAGUCACCCUGCCCAGCUCCAAGUUCCACCAGAACCAGCUCCUCAGCAGCCUCAAGGGUGAGCCAGCCCCCGCUCUGAGCUCGCGAGACAGCCGCUUCCGAGACCGCUCCUUCUCGGAAGGGGGCGAGCGGCUGCUGCCCACCCAGAAGCAGCCCGGGGGCGGCCAGGUCAACUCCAGCCGCUACAAGACGGAGCUGUGCC
Sequence (SHORT NAMES ENCODING) CACCACCACCUCCAAGCUAAAAUACCUGGGCCGCCCCUCCCCACGAAGGGACGCGCUCCAGGCGAAUGGGGAGGGCCCGGAAGUCGGGCCUGGGACAGAGGAGCCGGCCCACCGCCUCCCGGUCGGAAGCGGCAGUGCAGCCm5CGGAGUCAGAAAGGCGAGGGGCGCCGGGAACUGGCGUGUGGGACUCCAGACAGGAGAGGCUGCGCCUUCCCCGCACCGGGACCUUCGCGACACACCAGAUCCUCGCCCCUGGCUCGCGCGAACGCACAGGAUGACCACCACCCUCGUGUCUGCCACCAUCUUCGACUUGAGCGAAGUUUUAUGCAAGGGUAACAAGAUGCUCAACUAUAGUGCUCCCAGUGCAGGGGGUUGCCUGCUGGACAGAAAGGCAGUGGGCACCCCUGCUGGUGGGGGCUUCCCUCGGAGGCACUCAGUCACCCUGCCCAGCUCCAAGUUCCACCAGAACCAGCUCCUCAGCAGCCUCAAGGGUGAGCCAGCCCCCGCUCUGAGCUCGCGAGACAGCCGCUUCCGAGACCGCUCCUUCUCGGAAGGGGGCGAGCGGCUGCUGCCCACCCAGAAGCAGCCCGGGGGCGGCCAGGUCAACUCCAGCCGCUACAAGACGGAGCUGUGCC
Sequence (MODOMICS CODE ENCODING) CACCACCACCUCCAAGCUAAAAUACCUGGGCCGCCCCUCCCCACGAAGGGACGCGCUCCAGGCGAAUGGGGAGGGCCCGGAAGUCGGGCCUGGGACAGAGGAGCCGGCCCACCGCCUCCCGGUCGGAAGCGGCAGUGCAGCC2000000005CGGAGUCAGAAAGGCGAGGGGCGCCGGGAACUGGCGUGUGGGACUCCAGACAGGAGAGGCUGCGCCUUCCCCGCACCGGGACCUUCGCGACACACCAGAUCCUCGCCCCUGGCUCGCGCGAACGCACAGGAUGACCACCACCCUCGUGUCUGCCACCAUCUUCGACUUGAGCGAAGUUUUAUGCAAGGGUAACAAGAUGCUCAACUAUAGUGCUCCCAGUGCAGGGGGUUGCCUGCUGGACAGAAAGGCAGUGGGCACCCCUGCUGGUGGGGGCUUCCCUCGGAGGCACUCAGUCACCCUGCCCAGCUCCAAGUUCCACCAGAACCAGCUCCUCAGCAGCCUCAAGGGUGAGCCAGCCCCCGCUCUGAGCUCGCGAGACAGCCGCUUCCGAGACCGCUCCUUCUCGGAAGGGGGCGAGCGGCUGCUGCCCACCCAGAAGCAGCCCGGGGGCGGCCAGGUCAACUCCAGCCGCUACAAGACGGAGCUGUGCC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 143
Modification Positions m5C
Genomic Coordinates 14:68793068:-
Level of Experimental Evidence 3
Level of Experimental Reliability 3
Source Sci-ModoM
EUFIDs MV5GT2HDg83J
WGVSnk7Zdh5Y