Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000559974
Gene ID: ENSG00000100949
Gene Name: RABGGTA
Sequence (UNICHARACTER ENCODING) CAGCGCCUGGGCUCUGUGGCGGGCGCCGCAGCUCCGCGUCCCCCGCGCCUCCUCCCAGCGCAGGCACGCUUGCUGCUUCCGGACACAGCUGUGGGCGGAGCUAGUAGGGGCGGGGCUACGUGAUUGACACUUCUCUCCUCAGACUUCAAGGGCUACCACUGGACCCUUCCCCUGUCUUGAACCCUGAGCCGGCACCAUGCACGGACGCCUGAAGGUGAAGACGUCAGAAGAGCAGGCGGAGGCCAAAAGGCUAGAGCGAGAGCAGAAGCUGAAGCUAUACCAGUCAGCCACCCAGGCCGUAUUCCAGAAGCGCCAGGCUGGUGAGCUGGAUGAGUCCGUGCUGGAACUGACAAGCCAGAUUCUGGGAGCCAACCCUGAUUUUGCCACCCUCUGGAЖCUGCCGACGAGAGGUGCUCCAGCAGCUGGAGACUCAGAAGUCUCCUGAAGAGUUGGCUGCUCUGGUGAAGGCAGAACUGGGCUUCCUGGAGAGCUGCCUGCGGGUGAACCCCAAGUCUUAUGGUACCUGGCACCACCGAUGCUGGCUGCUAGGCCGCCUGCCUGAGCCCAACUGGACCCGAGAGCUGGAGCUCUGUGCCCGUUUCCUGGAGGUGGAUGAGCGGAACUUUCACUGCUGGGACUAUCGGCGGUUUGUGGCCACACAGGCAGCCGUGCCCCCUGCAGAAGAGCUAGCCUUCACUGACAGCCUCAUCACCCGAAACUUCUCCAACUACUCUUCCUGGCAUUACCGCUCCUGUCUCUUGCCCCAGCUGCACCCCCAGCCGGAUUCUGGACCACAGGGGCGCCUCCCUGAGGAUGUGCUGCUCAAAGAGCUGGAGCUGGUGCAGAAUGCCUUCUUCACUGACCCCAAUGACCAGAGUGCCUGGUUUUAUCACCGUUGGCUCCUAGGCCGAGCUGACCCCCAGGAUGCACUGCGCUGCCUGCAUGUGAGCCGGGACGAGGCCUGUCUGACUGUCUCCUUCUCUCGGCCCCUCUUAGUGGGCUCCAGGAUGGAGAUCUUGCUGCUCAUGGUUGAUGAUUCUCCCCUGAUUGUGGAGUGGAGGACCCCAGAUGGCAGGAACCGGCCCAGCCAUGUCUGGCUCUGUGACCUGCCUGCUGCCUCCCUCAACGACCAGUUGCCCCAACAUACAUUUCGCGUCAUPUGGACAGCAGGCGAUGUCCAGAAAGAAUGCGUGCUUUUAAAAGGCCGCCAGGAGGGCUGGUGCCGGGACUCCACGACAGACGAGCAGCUAUUCAGGUGUGAGCUGUCAGUGGAGAAGUCCACAGUGCUGCAGUCUGAGCUGGAAUCCUGUAAGGAGCUGCAGGAGCUGGAGCCUGAGAAUAAAUGGUGCCUGCUUACCAUCAPCCUGCUGAUGCGGGCACUGGACCCCCUGCUGUAUGAGAAGGAGЖCCCUGCAGUACUUCCAGACCCUCAAGGCAAGCCGUGGACCCCAUGCGGGCAACGUAUCUGGAUGACCUGCGCAGCAAGUUCUUGCUGGAGAAUAGCGUGCUCAAGAUGGAGUAUGCCGAGGUGCGUGUGCUGCACCUGGCUCACAAGGAUCUGACAGUGCUCUGCCAUCUGGAACAGCUGCUCUUGGUCACCCAUCUUGACUUGUCACACAAUCGCCUCCGAACCCUGCCACCUGCACUGGCUGCCCUGCGCUGCCUUGAGGUGCUGCAGGCCAGUGAUAAUGCCAUAGAGUCCCUGGACGGCGUCACCAACCUACCCCGGCUGCAGGAGCUGCUACUGUGCAACAACCGCCPCCAGCAGCCUGCAGUGCUCCAGCCUCUUGCCUCCUGCCCCAGGCUGGUCCUCCUCAACCUGCAGGGUAACCCGCUGUGCCAAGCGGUGGGCAUCUUGGAGCAACUGGCUGAACUGCUGCCUUCAGUUAGCAGCGUCCUCACCUAAGAGGCCCUGCCCCCUACCCUUGCCCUPUAЖCUUAUUGGGACUGAAUAAAGAAUGGAGAG
Sequence (SHORT NAMES ENCODING) CAGCGCCUGGGCUCUGUGGCGGGCGCCGCAGCUCCGCGUCCCCCGCGCCUCCUCCCAGCGCAGGCACGCUUGCUGCUUCCGGACACAGCUGUGGGCGGAGCUAGUAGGGGCGGGGCUACGUGAUUGACACUUCUCUCCUCAGACUUCAAGGGCUACCACUGGACCCUUCCCCUGUCUUGAACCCUGAGCCGGCACCAUGCACGGACGCCUGAAGGUGAAGACGUCAGAAGAGCAGGCGGAGGCCAAAAGGCUAGAGCGAGAGCAGAAGCUGAAGCUAUACCAGUCAGCCACCCAGGCCGUAUUCCAGAAGCGCCAGGCUGGUGAGCUGGAUGAGUCCGUGCUGGAACUGACAAGCCAGAUUCUGGGAGCCAACCCUGAUUUUGCCACCCUCUGGAm6ACUGCCGACGAGAGGUGCUCCAGCAGCUGGAGACUCAGAAGUCUCCUGAAGAGUUGGCUGCUCUGGUGAAGGCAGAACUGGGCUUCCUGGAGAGCUGCCUGCGGGUGAACCCCAAGUCUUAUGGUACCUGGCACCACCGAUGCUGGCUGCUAGGCCGCCUGCCUGAGCCCAACUGGACCCGAGAGCUGGAGCUCUGUGCCCGUUUCCUGGAGGUGGAUGAGCGGAACUUUCACUGCUGGGACUAUCGGCGGUUUGUGGCCACACAGGCAGCCGUGCCCCCUGCAGAAGAGCUAGCCUUCACUGACAGCCUCAUCACCCGAAACUUCUCCAACUACUCUUCCUGGCAUUACCGCUCCUGUCUCUUGCCCCAGCUGCACCCCCAGCCGGAUUCUGGACCACAGGGGCGCCUCCCUGAGGAUGUGCUGCUCAAAGAGCUGGAGCUGGUGCAGAAUGCCUUCUUCACUGACCCCAAUGACCAGAGUGCCUGGUUUUAUCACCGUUGGCUCCUAGGCCGAGCUGACCCCCAGGAUGCACUGCGCUGCCUGCAUGUGAGCCGGGACGAGGCCUGUCUGACUGUCUCCUUCUCUCGGCCCCUCUUAGUGGGCUCCAGGAUGGAGAUCUUGCUGCUCAUGGUUGAUGAUUCUCCCCUGAUUGUGGAGUGGAGGACCCCAGAUGGCAGGAACCGGCCCAGCCAUGUCUGGCUCUGUGACCUGCCUGCUGCCUCCCUCAACGACCAGUUGCCCCAACAUACAUUUCGCGUCAUYUGGACAGCAGGCGAUGUCCAGAAAGAAUGCGUGCUUUUAAAAGGCCGCCAGGAGGGCUGGUGCCGGGACUCCACGACAGACGAGCAGCUAUUCAGGUGUGAGCUGUCAGUGGAGAAGUCCACAGUGCUGCAGUCUGAGCUGGAAUCCUGUAAGGAGCUGCAGGAGCUGGAGCCUGAGAAUAAAUGGUGCCUGCUUACCAUCAYCCUGCUGAUGCGGGCACUGGACCCCCUGCUGUAUGAGAAGGAGm6ACCCUGCAGUACUUCCAGACCCUCAAGGCAAGCCGUGGACCCCAUGCGGGCAACGUAUCUGGAUGACCUGCGCAGCAAGUUCUUGCUGGAGAAUAGCGUGCUCAAGAUGGAGUAUGCCGAGGUGCGUGUGCUGCACCUGGCUCACAAGGAUCUGACAGUGCUCUGCCAUCUGGAACAGCUGCUCUUGGUCACCCAUCUUGACUUGUCACACAAUCGCCUCCGAACCCUGCCACCUGCACUGGCUGCCCUGCGCUGCCUUGAGGUGCUGCAGGCCAGUGAUAAUGCCAUAGAGUCCCUGGACGGCGUCACCAACCUACCCCGGCUGCAGGAGCUGCUACUGUGCAACAACCGCCYCCAGCAGCCUGCAGUGCUCCAGCCUCUUGCCUCCUGCCCCAGGCUGGUCCUCCUCAACCUGCAGGGUAACCCGCUGUGCCAAGCGGUGGGCAUCUUGGAGCAACUGGCUGAACUGCUGCCUUCAGUUAGCAGCGUCCUCACCUAAGAGGCCCUGCCCCCUACCCUUGCCCUYUAm6ACUUAUUGGGACUGAAUAAAGAAUGGAGAG
Sequence (MODOMICS CODE ENCODING) CAGCGCCUGGGCUCUGUGGCGGGCGCCGCAGCUCCGCGUCCCCCGCGCCUCCUCCCAGCGCAGGCACGCUUGCUGCUUCCGGACACAGCUGUGGGCGGAGCUAGUAGGGGCGGGGCUACGUGAUUGACACUUCUCUCCUCAGACUUCAAGGGCUACCACUGGACCCUUCCCCUGUCUUGAACCCUGAGCCGGCACCAUGCACGGACGCCUGAAGGUGAAGACGUCAGAAGAGCAGGCGGAGGCCAAAAGGCUAGAGCGAGAGCAGAAGCUGAAGCUAUACCAGUCAGCCACCCAGGCCGUAUUCCAGAAGCGCCAGGCUGGUGAGCUGGAUGAGUCCGUGCUGGAACUGACAAGCCAGAUUCUGGGAGCCAACCCUGAUUUUGCCACCCUCUGGA2000000006ACUGCCGACGAGAGGUGCUCCAGCAGCUGGAGACUCAGAAGUCUCCUGAAGAGUUGGCUGCUCUGGUGAAGGCAGAACUGGGCUUCCUGGAGAGCUGCCUGCGGGUGAACCCCAAGUCUUAUGGUACCUGGCACCACCGAUGCUGGCUGCUAGGCCGCCUGCCUGAGCCCAACUGGACCCGAGAGCUGGAGCUCUGUGCCCGUUUCCUGGAGGUGGAUGAGCGGAACUUUCACUGCUGGGACUAUCGGCGGUUUGUGGCCACACAGGCAGCCGUGCCCCCUGCAGAAGAGCUAGCCUUCACUGACAGCCUCAUCACCCGAAACUUCUCCAACUACUCUUCCUGGCAUUACCGCUCCUGUCUCUUGCCCCAGCUGCACCCCCAGCCGGAUUCUGGACCACAGGGGCGCCUCCCUGAGGAUGUGCUGCUCAAAGAGCUGGAGCUGGUGCAGAAUGCCUUCUUCACUGACCCCAAUGACCAGAGUGCCUGGUUUUAUCACCGUUGGCUCCUAGGCCGAGCUGACCCCCAGGAUGCACUGCGCUGCCUGCAUGUGAGCCGGGACGAGGCCUGUCUGACUGUCUCCUUCUCUCGGCCCCUCUUAGUGGGCUCCAGGAUGGAGAUCUUGCUGCUCAUGGUUGAUGAUUCUCCCCUGAUUGUGGAGUGGAGGACCCCAGAUGGCAGGAACCGGCCCAGCCAUGUCUGGCUCUGUGACCUGCCUGCUGCCUCCCUCAACGACCAGUUGCCCCAACAUACAUUUCGCGUCAU2000000009UUGGACAGCAGGCGAUGUCCAGAAAGAAUGCGUGCUUUUAAAAGGCCGCCAGGAGGGCUGGUGCCGGGACUCCACGACAGACGAGCAGCUAUUCAGGUGUGAGCUGUCAGUGGAGAAGUCCACAGUGCUGCAGUCUGAGCUGGAAUCCUGUAAGGAGCUGCAGGAGCUGGAGCCUGAGAAUAAAUGGUGCCUGCUUACCAUCA2000000009UCCUGCUGAUGCGGGCACUGGACCCCCUGCUGUAUGAGAAGGAG2000000006ACCCUGCAGUACUUCCAGACCCUCAAGGCAAGCCGUGGACCCCAUGCGGGCAACGUAUCUGGAUGACCUGCGCAGCAAGUUCUUGCUGGAGAAUAGCGUGCUCAAGAUGGAGUAUGCCGAGGUGCGUGUGCUGCACCUGGCUCACAAGGAUCUGACAGUGCUCUGCCAUCUGGAACAGCUGCUCUUGGUCACCCAUCUUGACUUGUCACACAAUCGCCUCCGAACCCUGCCACCUGCACUGGCUGCCCUGCGCUGCCUUGAGGUGCUGCAGGCCAGUGAUAAUGCCAUAGAGUCCCUGGACGGCGUCACCAACCUACCCCGGCUGCAGGAGCUGCUACUGUGCAACAACCGCC2000000009UCCAGCAGCCUGCAGUGCUCCAGCCUCUUGCCUCCUGCCCCAGGCUGGUCCUCCUCAACCUGCAGGGUAACCCGCUGUGCCAAGCGGUGGGCAUCUUGGAGCAACUGGCUGAACUGCUGCCUUCAGUUAGCAGCGUCCUCACCUAAGAGGCCCUGCCCCCUACCCUUGCCCU2000000009UUA2000000006ACUUAUUGGGACUGAAUAAAGAAUGGAGAG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 396 1159 1362 1406 1759 1931 1934
Modification Positions m6A Y Y m6A Y Y m6A
Genomic Coordinates 14:24270373:- 14:24268557:- 14:24267940:- 14:24267896:- 14:24265760:- 14:24265588:- 14:24265585:-
Level of Experimental Evidence 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
Mk6ShCGm6RBJ
oZ9Kp5NX8Hv5
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8
BtsJQJ3DteUq
dknfVe6BK8aP
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
a7o5Kmjr4Tdp
Yfn77uLS5tv8