Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000679442
Gene ID: ENSG00000100532
Gene Name: CGRRF1
Sequence (UNICHARACTER ENCODING) CGGGCUGGGCUGGGCUCCGCGGCUGGAGCCGGGCUCUACCCAGAGCAAGACCCUGAUGGCUGCGGUGUUUCUGGUAACGCUPUAUGAAUACUCGCCGCUUUUCUACAUCGCGGUGGUCUPUACCUGCUUCAUCGUGACCACCGGCCUGGUAUUGGGAUGGUUUGGUUGGGAUGUUCCAGUAAUUCUGAGAAAUUCAGAAGAGЖCCCAGUUCAGCACAAGAGUUUUCAAAAAGCAAAUGAGACAAGUCAAGAAUCCUUUUGGCUUAGAGAUCACUAAUCCAUCUUCAGCUUCAAUUACAACUGGCAUAACCUUGACAACAGAUUGCCUUGAAGAUAGCCUCCUUACAUGCUACUGGGGGUGCAGUGUUCAAAAAUUAUAUGAAGCUCUGCAGAAGCAUGUUUAUUGCUUCAGAAUAAGCACUCCCCAAGCAUUAGAAGAUGCUCUGUAUAGUGAAUAUCUCUAUCAGGAACAGUAUUUGUAUCCUUUCGUCUGAUAUACCCAUUAGCACUGAAAAUUAGACUUCUUAUGGAUAAAGUGUUGCUAACUUAUUGAUCAUUCUUGGUAUACUAGAAGCAUGUUUAUUGCUUCAGAAUAAGCACUCCUCAAGCAUUAGAAGAUGCUCUGUGGAGUGAAUAUCUCUAUCAGGAACAGUAUUUUAUUAAAAAGGAUAGCAAAGAAGAAAUAUAUUGCCAGUUACCAAGAGAUACUAAAAUUGAAGACUUUGGUACAGUACCCAGAUCUCGCUAUCCAUUGGUAGCGCUAUUGACCUUAGCUGAUGAGGAUGACCGGGAAAUUUAUGAUAUUAUUUCCAUGGUGUCAGUGAUUCAUAUUCCUGAUAGGACUUAUAAACUAUCCUGCAGAAUAUUGUAUCAAUAUUUACUCUUGGCUCAAGGUCAAUUUCAUGAUCUUAAGCAACUUUUCAUGUCUGCAAAUAAUAAUUUCACUCCCUCCAACAAUUCCUCUUCAGAAGAAAAAAACACAGACAGAAGUUUGUUGGAAAAGGUGGGЖCUCUCUGAAAGUGAAGUUGAGCCAUCGGAAGAGAЖCAGCAAGGЖCUGUGUUGUUUGCCAGAAUGGGЖCUGUGAЖCUGGGUACUCUUACCAUGCAGACACACAUGCCUGUGUGAUGGCUGUGUGAAGUAUUUUCAGCAGUGCCCAAUGUGCAGGCAGUUUGUUCAGGAAUCUUUUGCACUUUGCAGUCAAAAAGAGCAAGAUAAAGACAAЖCCGAAGACUCUUUGAAGACAUCGUAЖCACUGAAAAGUACACUUUCUACUAAAGAUGCAGAAAUUGAUGAUCUUGGAAUUCAUCAUAЖCAUGGAAUCUACAGUACUGACCAUCAAUGAAAAUUAUAUUUUAЖCUUCAUAUUUGUAUGGUACUUGGAUGAUAAAAAUUAAUUAUUCCUUUCUGCUUAGUGAAUGAAUACUGGAAUCCAUCUGUGUUGAUACAUAAAAAUUCAUUCAACUCUUGAAAAGAAUCUAAGAGUUUGGCCUUUUAUUAGCUAGAUUUCCUCUCAUGUUAAUUAGAAAAAUCAUUCUGAAAGGCAAUCCAUUGAAAAUUUGAGGAGGUUAAAUUCUUAAGAUCACUAAAUGUUUUACCUUUGAUGUAAUCGGAGUGCAAUUAAGAAAAAACUUAAUUCUACUUAAAGUAAUUGUGUGUUCCCUAGUUUAUACAAAGGAGUUGGAAUGAGCUUCUUUAGAUCUUUUCCUGAAAUAACAGCUUUUAUAAAUAUCCAUCUGUUUGGUUUCUAAUGUCCCUUAUUAUAGUUACGUAAAUACAGGUCAUAGUUUUAAAUAUAGGUUCUUAAAUCAUAAAUACAAGAUAUAAUUCUUGACUGUUCUCCGUGUAUUAUAAAAUGAUACUCAUCUAUAGGAGGCAGAUAUAUAAAAUUCGGAUAAUAAGAUUUUUUGGAUAAUUAAAUUUAUUAAAUUGAUAGUCAAGUGUGAUU
Sequence (SHORT NAMES ENCODING) CGGGCUGGGCUGGGCUCCGCGGCUGGAGCCGGGCUCUACCCAGAGCAAGACCCUGAUGGCUGCGGUGUUUCUGGUAACGCUYUAUGAAUACUCGCCGCUUUUCUACAUCGCGGUGGUCUYUACCUGCUUCAUCGUGACCACCGGCCUGGUAUUGGGAUGGUUUGGUUGGGAUGUUCCAGUAAUUCUGAGAAAUUCAGAAGAGm6ACCCAGUUCAGCACAAGAGUUUUCAAAAAGCAAAUGAGACAAGUCAAGAAUCCUUUUGGCUUAGAGAUCACUAAUCCAUCUUCAGCUUCAAUUACAACUGGCAUAACCUUGACAACAGAUUGCCUUGAAGAUAGCCUCCUUACAUGCUACUGGGGGUGCAGUGUUCAAAAAUUAUAUGAAGCUCUGCAGAAGCAUGUUUAUUGCUUCAGAAUAAGCACUCCCCAAGCAUUAGAAGAUGCUCUGUAUAGUGAAUAUCUCUAUCAGGAACAGUAUUUGUAUCCUUUCGUCUGAUAUACCCAUUAGCACUGAAAAUUAGACUUCUUAUGGAUAAAGUGUUGCUAACUUAUUGAUCAUUCUUGGUAUACUAGAAGCAUGUUUAUUGCUUCAGAAUAAGCACUCCUCAAGCAUUAGAAGAUGCUCUGUGGAGUGAAUAUCUCUAUCAGGAACAGUAUUUUAUUAAAAAGGAUAGCAAAGAAGAAAUAUAUUGCCAGUUACCAAGAGAUACUAAAAUUGAAGACUUUGGUACAGUACCCAGAUCUCGCUAUCCAUUGGUAGCGCUAUUGACCUUAGCUGAUGAGGAUGACCGGGAAAUUUAUGAUAUUAUUUCCAUGGUGUCAGUGAUUCAUAUUCCUGAUAGGACUUAUAAACUAUCCUGCAGAAUAUUGUAUCAAUAUUUACUCUUGGCUCAAGGUCAAUUUCAUGAUCUUAAGCAACUUUUCAUGUCUGCAAAUAAUAAUUUCACUCCCUCCAACAAUUCCUCUUCAGAAGAAAAAAACACAGACAGAAGUUUGUUGGAAAAGGUGGGm6ACUCUCUGAAAGUGAAGUUGAGCCAUCGGAAGAGAm6ACAGCAAGGm6ACUGUGUUGUUUGCCAGAAUGGGm6ACUGUGAm6ACUGGGUACUCUUACCAUGCAGACACACAUGCCUGUGUGAUGGCUGUGUGAAGUAUUUUCAGCAGUGCCCAAUGUGCAGGCAGUUUGUUCAGGAAUCUUUUGCACUUUGCAGUCAAAAAGAGCAAGAUAAAGACAAm6ACCGAAGACUCUUUGAAGACAUCGUAm6ACACUGAAAAGUACACUUUCUACUAAAGAUGCAGAAAUUGAUGAUCUUGGAAUUCAUCAUAm6ACAUGGAAUCUACAGUACUGACCAUCAAUGAAAAUUAUAUUUUAm6ACUUCAUAUUUGUAUGGUACUUGGAUGAUAAAAAUUAAUUAUUCCUUUCUGCUUAGUGAAUGAAUACUGGAAUCCAUCUGUGUUGAUACAUAAAAAUUCAUUCAACUCUUGAAAAGAAUCUAAGAGUUUGGCCUUUUAUUAGCUAGAUUUCCUCUCAUGUUAAUUAGAAAAAUCAUUCUGAAAGGCAAUCCAUUGAAAAUUUGAGGAGGUUAAAUUCUUAAGAUCACUAAAUGUUUUACCUUUGAUGUAAUCGGAGUGCAAUUAAGAAAAAACUUAAUUCUACUUAAAGUAAUUGUGUGUUCCCUAGUUUAUACAAAGGAGUUGGAAUGAGCUUCUUUAGAUCUUUUCCUGAAAUAACAGCUUUUAUAAAUAUCCAUCUGUUUGGUUUCUAAUGUCCCUUAUUAUAGUUACGUAAAUACAGGUCAUAGUUUUAAAUAUAGGUUCUUAAAUCAUAAAUACAAGAUAUAAUUCUUGACUGUUCUCCGUGUAUUAUAAAAUGAUACUCAUCUAUAGGAGGCAGAUAUAUAAAAUUCGGAUAAUAAGAUUUUUUGGAUAAUUAAAUUUAUUAAAUUGAUAGUCAAGUGUGAUU
Sequence (MODOMICS CODE ENCODING) CGGGCUGGGCUGGGCUCCGCGGCUGGAGCCGGGCUCUACCCAGAGCAAGACCCUGAUGGCUGCGGUGUUUCUGGUAACGCU2000000009UUAUGAAUACUCGCCGCUUUUCUACAUCGCGGUGGUCU2000000009UUACCUGCUUCAUCGUGACCACCGGCCUGGUAUUGGGAUGGUUUGGUUGGGAUGUUCCAGUAAUUCUGAGAAAUUCAGAAGAG2000000006ACCCAGUUCAGCACAAGAGUUUUCAAAAAGCAAAUGAGACAAGUCAAGAAUCCUUUUGGCUUAGAGAUCACUAAUCCAUCUUCAGCUUCAAUUACAACUGGCAUAACCUUGACAACAGAUUGCCUUGAAGAUAGCCUCCUUACAUGCUACUGGGGGUGCAGUGUUCAAAAAUUAUAUGAAGCUCUGCAGAAGCAUGUUUAUUGCUUCAGAAUAAGCACUCCCCAAGCAUUAGAAGAUGCUCUGUAUAGUGAAUAUCUCUAUCAGGAACAGUAUUUGUAUCCUUUCGUCUGAUAUACCCAUUAGCACUGAAAAUUAGACUUCUUAUGGAUAAAGUGUUGCUAACUUAUUGAUCAUUCUUGGUAUACUAGAAGCAUGUUUAUUGCUUCAGAAUAAGCACUCCUCAAGCAUUAGAAGAUGCUCUGUGGAGUGAAUAUCUCUAUCAGGAACAGUAUUUUAUUAAAAAGGAUAGCAAAGAAGAAAUAUAUUGCCAGUUACCAAGAGAUACUAAAAUUGAAGACUUUGGUACAGUACCCAGAUCUCGCUAUCCAUUGGUAGCGCUAUUGACCUUAGCUGAUGAGGAUGACCGGGAAAUUUAUGAUAUUAUUUCCAUGGUGUCAGUGAUUCAUAUUCCUGAUAGGACUUAUAAACUAUCCUGCAGAAUAUUGUAUCAAUAUUUACUCUUGGCUCAAGGUCAAUUUCAUGAUCUUAAGCAACUUUUCAUGUCUGCAAAUAAUAAUUUCACUCCCUCCAACAAUUCCUCUUCAGAAGAAAAAAACACAGACAGAAGUUUGUUGGAAAAGGUGGG2000000006ACUCUCUGAAAGUGAAGUUGAGCCAUCGGAAGAGA2000000006ACAGCAAGG2000000006ACUGUGUUGUUUGCCAGAAUGGG2000000006ACUGUGA2000000006ACUGGGUACUCUUACCAUGCAGACACACAUGCCUGUGUGAUGGCUGUGUGAAGUAUUUUCAGCAGUGCCCAAUGUGCAGGCAGUUUGUUCAGGAAUCUUUUGCACUUUGCAGUCAAAAAGAGCAAGAUAAAGACAA2000000006ACCGAAGACUCUUUGAAGACAUCGUA2000000006ACACUGAAAAGUACACUUUCUACUAAAGAUGCAGAAAUUGAUGAUCUUGGAAUUCAUCAUA2000000006ACAUGGAAUCUACAGUACUGACCAUCAAUGAAAAUUAUAUUUUA2000000006ACUUCAUAUUUGUAUGGUACUUGGAUGAUAAAAAUUAAUUAUUCCUUUCUGCUUAGUGAAUGAAUACUGGAAUCCAUCUGUGUUGAUACAUAAAAAUUCAUUCAACUCUUGAAAAGAAUCUAAGAGUUUGGCCUUUUAUUAGCUAGAUUUCCUCUCAUGUUAAUUAGAAAAAUCAUUCUGAAAGGCAAUCCAUUGAAAAUUUGAGGAGGUUAAAUUCUUAAGAUCACUAAAUGUUUUACCUUUGAUGUAAUCGGAGUGCAAUUAAGAAAAAACUUAAUUCUACUUAAAGUAAUUGUGUGUUCCCUAGUUUAUACAAAGGAGUUGGAAUGAGCUUCUUUAGAUCUUUUCCUGAAAUAACAGCUUUUAUAAAUAUCCAUCUGUUUGGUUUCUAAUGUCCCUUAUUAUAGUUACGUAAAUACAGGUCAUAGUUUUAAAUAUAGGUUCUUAAAUCAUAAAUACAAGAUAUAAUUCUUGACUGUUCUCCGUGUAUUAUAAAAUGAUACUCAUCUAUAGGAGGCAGAUAUAUAAAAUUCGGAUAAUAAGAUUUUUUGGAUAAUUAAAUUUAUUAAAUUGAUAGUCAAGUGUGAUU

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 82 120 203 1008 1043 1052 1075 1082 1218 1244 1305 1349
Modification Positions Y Y m6A m6A m6A m6A m6A m6A m6A m6A m6A m6A
Genomic Coordinates 14:54509986:+ 14:54510024:+ 14:54522497:+ 14:54538158:+ 14:54538193:+ 14:54538202:+ 14:54538225:+ 14:54538232:+ 14:54538368:+ 14:54538394:+ 14:54538455:+ 14:54538499:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
iezFbUdmY3A6
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
5Nnepx5V7yHo
Mg9GixDBFQAT
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
5FhTyQVy2tKW
5Nnepx5V7yHo
aHkqKEJkRYyb
gZuvgwMuBfgh
KRfQJWH4K5KH
Mg9GixDBFQAT
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
aJksAshEgQ8U
BkoLW2CBToyL
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
oZ9Kp5NX8Hv5
iezFbUdmY3A6
Yfn77uLS5tv8
5FhTyQVy2tKW
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
nGifePrmgHfe
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
BsCW7emuRX7M
Lny8GcCeVGc9
LZJKems7W2wi
UKen6WEino9G
XUkp6ghERQML
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8
BtsJQJ3DteUq
bXBqJigD9oV3
f6YSioLdAWpr
oZ9Kp5NX8Hv5
XWZVGdLC6gGJ
iezFbUdmY3A6
S9vNeQQYrhac
JkWoGWVwjNda
Yfn77uLS5tv8