General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000554079
Gene ID:	ENSG00000100625
Gene Name:	SIX4
Sequence (UNICHARACTER ENCODING)	CUUCCCGGCUUUCUUUUCCUCCAAGUGCUCGCAAACAUGGCGCUUACCUUCCCCACCAGCCUGGUCCGGCUGCCCACCUCUCCCCGCCCCCUACCUCGCUCCCCGGCCGGCAGAGGGCACUGGAUGGUGUUUGUUAAAUAGGCCCCUUUGGCUUCCUUUGGAUUCAAAGGCGACUGCACAUAACUGUUCUUGGGUUGAAAGUGCCUUUUCCUACAACAAGGACAGCCACUUUGUUGAAUGAGAGAGUUGUCAGUCUGGUGGAGUAGAAGUUUGGGAGCAGUGAGUCAGAUGGCAACCCCAGCACUGAAGAUGAAUCCAGCAAGGGЖCAUGAGGAUUUAUCUCCUCACCCACUCUCCAGUUCAUCUGAUGGCAUCACCAACCUCAGCCUUUCCAGUCAUAUGGAGCCAGUAUAUAUGCAACAAAUUGGAAAUGCUAAGAUAUCAUUAAGCUCUUCUGGAGUUCUGUUGAAUGGAAGCUUGGUACCUGCAAGUЖCUUCACCUGUCUUCCUUAAUGGAAAUUCUUUUAUUCAGGGЖCCCAGUGGAGUUAUCCUUAAUGGЖUUAAAUGUGGGAAAUACACAGGCAGUGGCAUUGAACCCACCAAAAAUGUCAUCAAЖCAUUGUGAGCAAUGGUAUAUCCAUGЖCUGACAUACUGGGGUCUACUUCCCAGGACGUGAAGGAAUUCAAAGUCCUCCAGAGUUCUGCUAACUCAGCAACCACCACGUCCUACAGCCCCAGUGUCCCUGUCUCAUUCCCAGGCCUGAUACCCAGCACUGAGGUGAAAAGAGAAGGCAUUCAAACAGUGGCUUCCCAAGAUGGAGGGUCUGUAGUGЖCUUUUACUACACCAGUGCAAAUUAACCAGUAUGGCAUUGUCCAGAUCCCCAAUUCCGGAGCAAACAGCCAGUUCCUUAAUGGGAGCAUUGGAUUCUCUCCACUGCAGCUGCCCCCUGUGUCAGUGGCAGCUUCACAAGGUAAUAUCUCAGUAAGCUCAAGCACUUCAGAUGGAAGCACAUUUACAAGUGAGUCUACCACAGUCCAGCAAGGAAAGGUUUUCUUGAGCUCUCUUGCUCCCAGUGCAGUGGUAUACACGGUUCCUAAUACAGGCCAGЖCUAUAGGAUCUGUGAAACAGGAAGGCUUGGAAAGGAGCCUGGUAUUUUCUCAGUUGAUGCCUGUCAAUCAGAAUGCACAAGUAAAUGCAAACCUGUCUUCUGAAAACAUCUCGGGGAGUGGCCUGCAUCCACUGGCCUCCUCAUUAGUUAAUGUAUCUCCAACUCACAAUUUUUCUCUCAGUCCCUCUACACUACUAAAUCCCACUGAGCUAAACCGCGACAUUGCCGAUAGCCAACCAAUGUCUGCACCGGUGGCAAGCAAAUCUACUGUGACAUCUGUCAGCAACACUAACUAUGCAACUCUUCAGAЖCUGCUCCCUUAUUACUGGUCAAGACCUAUUGUCAGUCCCUAUGЖCUCAGGCUGCCCUUGGGGAAAUAGUUCCUACAGCUGAAGAUCAGGUAGGUCACCCCUCCCCAGCAGUACAUCAGGAUUUUGUCCAAGAACAUCGUUUGGUUCUGCAAUCGGUAGCUAACAUGAAAGAGAAUUUCUUAUCAAAUUCUGAGAGCAAAGCAACAAGUAGCUUAAUGAUGCUGGЖCUCUAAAUCCAAGUAUGUCUUAGAUGGCAUGGUUGAUACUGUCUGUGAAGACCUGGAAACAGACAAAAAAGAGCUUGCCAAGCUCCAGЖCUGUCCAGCUGGAUGAAGAUAUGCAAGACUUAUGAЖCUUUAUUUCCUCCUCACCUCUUUUUGGCAUCAGCGGCAAAUCUUUUCAUGAAGCCCCAAGGЖCACAAAACAUUUUCCCAUUUAAAGGAAAACACUCUAGUUUUGCAAGUAUAUGCAUACAAGAGACUUUAGAUUGAUCUGCAUGAAGAUCACAGUUAAGUAUACAGGAGUAGAЖCUGCAUUAUUGCAGCCUUUUUGUUCACUUAUAAAUUUCUCUUUUAAAUAGAUGGAGACAAAGGAC
Sequence (SHORT NAMES ENCODING)	CUUCCCGGCUUUCUUUUCCUCCAAGUGCUCGCAAACAUGGCGCUUACCUUCCCCACCAGCCUGGUCCGGCUGCCCACCUCUCCCCGCCCCCUACCUCGCUCCCCGGCCGGCAGAGGGCACUGGAUGGUGUUUGUUAAAUAGGCCCCUUUGGCUUCCUUUGGAUUCAAAGGCGACUGCACAUAACUGUUCUUGGGUUGAAAGUGCCUUUUCCUACAACAAGGACAGCCACUUUGUUGAAUGAGAGAGUUGUCAGUCUGGUGGAGUAGAAGUUUGGGAGCAGUGAGUCAGAUGGCAACCCCAGCACUGAAGAUGAAUCCAGCAAGGGm6ACAUGAGGAUUUAUCUCCUCACCCACUCUCCAGUUCAUCUGAUGGCAUCACCAACCUCAGCCUUUCCAGUCAUAUGGAGCCAGUAUAUAUGCAACAAAUUGGAAAUGCUAAGAUAUCAUUAAGCUCUUCUGGAGUUCUGUUGAAUGGAAGCUUGGUACCUGCAAGUm6ACUUCACCUGUCUUCCUUAAUGGAAAUUCUUUUAUUCAGGGm6ACCCAGUGGAGUUAUCCUUAAUGGm6AUUAAAUGUGGGAAAUACACAGGCAGUGGCAUUGAACCCACCAAAAAUGUCAUCAAm6ACAUUGUGAGCAAUGGUAUAUCCAUGm6ACUGACAUACUGGGGUCUACUUCCCAGGACGUGAAGGAAUUCAAAGUCCUCCAGAGUUCUGCUAACUCAGCAACCACCACGUCCUACAGCCCCAGUGUCCCUGUCUCAUUCCCAGGCCUGAUACCCAGCACUGAGGUGAAAAGAGAAGGCAUUCAAACAGUGGCUUCCCAAGAUGGAGGGUCUGUAGUGm6ACUUUUACUACACCAGUGCAAAUUAACCAGUAUGGCAUUGUCCAGAUCCCCAAUUCCGGAGCAAACAGCCAGUUCCUUAAUGGGAGCAUUGGAUUCUCUCCACUGCAGCUGCCCCCUGUGUCAGUGGCAGCUUCACAAGGUAAUAUCUCAGUAAGCUCAAGCACUUCAGAUGGAAGCACAUUUACAAGUGAGUCUACCACAGUCCAGCAAGGAAAGGUUUUCUUGAGCUCUCUUGCUCCCAGUGCAGUGGUAUACACGGUUCCUAAUACAGGCCAGm6ACUAUAGGAUCUGUGAAACAGGAAGGCUUGGAAAGGAGCCUGGUAUUUUCUCAGUUGAUGCCUGUCAAUCAGAAUGCACAAGUAAAUGCAAACCUGUCUUCUGAAAACAUCUCGGGGAGUGGCCUGCAUCCACUGGCCUCCUCAUUAGUUAAUGUAUCUCCAACUCACAAUUUUUCUCUCAGUCCCUCUACACUACUAAAUCCCACUGAGCUAAACCGCGACAUUGCCGAUAGCCAACCAAUGUCUGCACCGGUGGCAAGCAAAUCUACUGUGACAUCUGUCAGCAACACUAACUAUGCAACUCUUCAGAm6ACUGCUCCCUUAUUACUGGUCAAGACCUAUUGUCAGUCCCUAUGm6ACUCAGGCUGCCCUUGGGGAAAUAGUUCCUACAGCUGAAGAUCAGGUAGGUCACCCCUCCCCAGCAGUACAUCAGGAUUUUGUCCAAGAACAUCGUUUGGUUCUGCAAUCGGUAGCUAACAUGAAAGAGAAUUUCUUAUCAAAUUCUGAGAGCAAAGCAACAAGUAGCUUAAUGAUGCUGGm6ACUCUAAAUCCAAGUAUGUCUUAGAUGGCAUGGUUGAUACUGUCUGUGAAGACCUGGAAACAGACAAAAAAGAGCUUGCCAAGCUCCAGm6ACUGUCCAGCUGGAUGAAGAUAUGCAAGACUUAUGAm6ACUUUAUUUCCUCCUCACCUCUUUUUGGCAUCAGCGGCAAAUCUUUUCAUGAAGCCCCAAGGm6ACACAAAACAUUUUCCCAUUUAAAGGAAAACACUCUAGUUUUGCAAGUAUAUGCAUACAAGAGACUUUAGAUUGAUCUGCAUGAAGAUCACAGUUAAGUAUACAGGAGUAGAm6ACUGCAUUAUUGCAGCCUUUUUGUUCACUUAUAAAUUUCUCUUUUAAAUAGAUGGAGACAAAGGAC
Sequence (MODOMICS CODE ENCODING)	CUUCCCGGCUUUCUUUUCCUCCAAGUGCUCGCAAACAUGGCGCUUACCUUCCCCACCAGCCUGGUCCGGCUGCCCACCUCUCCCCGCCCCCUACCUCGCUCCCCGGCCGGCAGAGGGCACUGGAUGGUGUUUGUUAAAUAGGCCCCUUUGGCUUCCUUUGGAUUCAAAGGCGACUGCACAUAACUGUUCUUGGGUUGAAAGUGCCUUUUCCUACAACAAGGACAGCCACUUUGUUGAAUGAGAGAGUUGUCAGUCUGGUGGAGUAGAAGUUUGGGAGCAGUGAGUCAGAUGGCAACCCCAGCACUGAAGAUGAAUCCAGCAAGGG2000000006ACAUGAGGAUUUAUCUCCUCACCCACUCUCCAGUUCAUCUGAUGGCAUCACCAACCUCAGCCUUUCCAGUCAUAUGGAGCCAGUAUAUAUGCAACAAAUUGGAAAUGCUAAGAUAUCAUUAAGCUCUUCUGGAGUUCUGUUGAAUGGAAGCUUGGUACCUGCAAGU2000000006ACUUCACCUGUCUUCCUUAAUGGAAAUUCUUUUAUUCAGGG2000000006ACCCAGUGGAGUUAUCCUUAAUGG2000000006AUUAAAUGUGGGAAAUACACAGGCAGUGGCAUUGAACCCACCAAAAAUGUCAUCAA2000000006ACAUUGUGAGCAAUGGUAUAUCCAUG2000000006ACUGACAUACUGGGGUCUACUUCCCAGGACGUGAAGGAAUUCAAAGUCCUCCAGAGUUCUGCUAACUCAGCAACCACCACGUCCUACAGCCCCAGUGUCCCUGUCUCAUUCCCAGGCCUGAUACCCAGCACUGAGGUGAAAAGAGAAGGCAUUCAAACAGUGGCUUCCCAAGAUGGAGGGUCUGUAGUG2000000006ACUUUUACUACACCAGUGCAAAUUAACCAGUAUGGCAUUGUCCAGAUCCCCAAUUCCGGAGCAAACAGCCAGUUCCUUAAUGGGAGCAUUGGAUUCUCUCCACUGCAGCUGCCCCCUGUGUCAGUGGCAGCUUCACAAGGUAAUAUCUCAGUAAGCUCAAGCACUUCAGAUGGAAGCACAUUUACAAGUGAGUCUACCACAGUCCAGCAAGGAAAGGUUUUCUUGAGCUCUCUUGCUCCCAGUGCAGUGGUAUACACGGUUCCUAAUACAGGCCAG2000000006ACUAUAGGAUCUGUGAAACAGGAAGGCUUGGAAAGGAGCCUGGUAUUUUCUCAGUUGAUGCCUGUCAAUCAGAAUGCACAAGUAAAUGCAAACCUGUCUUCUGAAAACAUCUCGGGGAGUGGCCUGCAUCCACUGGCCUCCUCAUUAGUUAAUGUAUCUCCAACUCACAAUUUUUCUCUCAGUCCCUCUACACUACUAAAUCCCACUGAGCUAAACCGCGACAUUGCCGAUAGCCAACCAAUGUCUGCACCGGUGGCAAGCAAAUCUACUGUGACAUCUGUCAGCAACACUAACUAUGCAACUCUUCAGA2000000006ACUGCUCCCUUAUUACUGGUCAAGACCUAUUGUCAGUCCCUAUG2000000006ACUCAGGCUGCCCUUGGGGAAAUAGUUCCUACAGCUGAAGAUCAGGUAGGUCACCCCUCCCCAGCAGUACAUCAGGAUUUUGUCCAAGAACAUCGUUUGGUUCUGCAAUCGGUAGCUAACAUGAAAGAGAAUUUCUUAUCAAAUUCUGAGAGCAAAGCAACAAGUAGCUUAAUGAUGCUGG2000000006ACUCUAAAUCCAAGUAUGUCUUAGAUGGCAUGGUUGAUACUGUCUGUGAAGACCUGGAAACAGACAAAAAAGAGCUUGCCAAGCUCCAG2000000006ACUGUCCAGCUGGAUGAAGAUAUGCAAGACUUAUGA2000000006ACUUUAUUUCCUCCUCACCUCUUUUUGGCAUCAGCGGCAAAUCUUUUCAUGAAGCCCCAAGG2000000006ACACAAAACAUUUUCCCAUUUAAAGGAAAACACUCUAGUUUUGCAAGUAUAUGCAUACAAGAGACUUUAGAUUGAUCUGCAUGAAGAUCACAGUUAAGUAUACAGGAGUAGA2000000006ACUGCAUUAUUGCAGCCUUUUUGUUCACUUAUAAAUUUCUCUUUUAAAUAGAUGGAGACAAAGGAC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	326	492	533	557	613	639	828	1104	1414	1458	1639	1728	1764	1826	1938
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	14:60720400:-	14:60720234:-	14:60720193:-	14:60720169:-	14:60720113:-	14:60720087:-	14:60719898:-	14:60714066:-	14:60713756:-	14:60713712:-	14:60713531:-	14:60713442:-	14:60713406:-	14:60713344:-	14:60713232:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	5FhTyQVy2tKW 6UuHp6YApVKv Ap2q43bQLNek gBgcfFQ5WN9C jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	6UuHp6YApVKv gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G	5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb Ap2q43bQLNek KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9	6UuHp6YApVKv msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	4HMi5ykupT9V 5aTkEfEpX8Xm 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL Lny8GcCeVGc9 UKen6WEino9G	4HMi5ykupT9V 5FhTyQVy2tKW 5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL UKen6WEino9G	4HMi5ykupT9V 5Nnepx5V7yHo 6UuHp6YApVKv msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	4HMi5ykupT9V 5aTkEfEpX8Xm 5Nnepx5V7yHo 6UuHp6YApVKv aHkqKEJkRYyb KRfQJWH4K5KH msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G	KRfQJWH4K5KH msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G	4HMi5ykupT9V 5aTkEfEpX8Xm msuJfBpJvM5H VyCX26p5UBRL