General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000555353
Gene ID:	ENSG00000053254
Gene Name:	FOXN3
Sequence (UNICHARACTER ENCODING)	GCGAUCUGCUGCAGCUCGGCCGGGAGACGGCGCGACCCGGCGGCGGGGCCACCCGCGAGUCCAGCGUCGCCGCAGCCCCCCAAUGCGGCCGCGAGAAGCAGCGGGGGGGCAGGCGAUCGAAGGAGCCUUCACGUAAAUGGGUCCAGUCAUGCCUCCCAGUAAGAAGCCAGAAAGCUCAGGAAUUAGUGUCUCCAGUGGЖCUGAGUCAGUGUUACGGGGGCAGCGGUUUCUCCAAGGCCCUUCAGGAAGACGAUGACCUCGACUUUUCUCUGCCUGACAUCCGAUUAGAAGAGGGGGCCAUGGAAGAUGAAGAGCUGACCAACCUGAЖCUGGCUGCACGAGAGCAAGAACUUGCUGAAGAGCUUUGGGGAGUCGGUCCUCAGGAGUGUCAGCCCCGUCCAGGЖCCUGGACGAUGACACCCCCCCAUCCCCUGCCCACUCUGACAUGCCCUACGAUGCCAGGCAGAACCCCAACUGCAAACCCCCCUACUCCUUCAGCUGCCUCAUAUUUAUGGCCAUCGAGGЖCUCUCCAACCAAGCGCCUGCCAGUGAAGGAUAUCUACAACUGGAUCUUGGAЖCAUUUUCCGUAUUUUGCAAAUGCACCUACUGGGUGGAAAAACUCAGUGAGACACAAUUUAUCAUUGAAUAAGUGUUUUAAGAAAGUGGACAAAGAGAGGAGUCAGAGUAUUGGGAAAGGGUCGUUGUGGUGCAUAGACCCAGAGUAUAGACAAAAUCUAAUUCAGGCUUUGAAAAAGACACCUUAUCACCCACACCCACACGUGUUCAAUACACCUCCCACCUGUCCUCAGGCAUAUCAAAGCACAUCAGGUCCACCCAUCUGGCCGGGCAGUACCUUCUUCAAGAGAAAUGGAGCCCUUCUCCAAGUUCCUCCAGGAGUGAUCCAAAAUGGAGCGCGGGUCCUGAGCCGAGGGCUGUUUCCUGGCGUGCGGCCGCUGCCAAUCACUCCCAUUGGGGUGACAGCGGCCAUGAGGAAUGGCAUCACCAGCUGCCGGAUGCGGЖCUGAGAGUGAGCCAUCUUGUGGCUCCCCAGUGGUCAGCGGAGACCCCAAGGAGGAUCACAACUACAGCAGUGCCAAGUCCUCCAACGCCCGGAGCACCUCGCCCACCAGCGACUCCAUCUCCUCCUCCUCCUCCUCAGCCGACGACCACUAUGAGUUUGCCACCAAGGGGAGCCAGGAGGGCAGCGAGGGCAGCGAGGGGAGCUUCCGGAGCCACGAGAGCCCCAGCGACACGGAAGAGGACGACAGGAAGCACAGCCAGAAGGAGCCCAAGGAUUCUCUGGGGGЖCAGCGGGUACGCAUCCCAGCACAAGAAGCGCCAGCACUUCGCCAAGGCCAGGAAGGUCCCCAGCGACACACUGCCCCUCAAAAAGAGACGCACCGAAAAGCCCCCCGAGAGCGAUGAUGAGGAGAUGAAAGAAGCGGCAGGGUCCCUCCUGCACUUAGCAGGGAUCCGGUCCUGUUUGAAUAACAUCACCAAUCGGЖCGGCAAAGGGGCAGAAAGAGCAAAAGGAAACCACAAAAAAUUAAAAACAAGUCACUGAUUUGUUUUGAЖCUUACGACCAUUUGGUUUCAGCAUGUC
Sequence (SHORT NAMES ENCODING)	GCGAUCUGCUGCAGCUCGGCCGGGAGACGGCGCGACCCGGCGGCGGGGCCACCCGCGAGUCCAGCGUCGCCGCAGCCCCCCAAUGCGGCCGCGAGAAGCAGCGGGGGGGCAGGCGAUCGAAGGAGCCUUCACGUAAAUGGGUCCAGUCAUGCCUCCCAGUAAGAAGCCAGAAAGCUCAGGAAUUAGUGUCUCCAGUGGm6ACUGAGUCAGUGUUACGGGGGCAGCGGUUUCUCCAAGGCCCUUCAGGAAGACGAUGACCUCGACUUUUCUCUGCCUGACAUCCGAUUAGAAGAGGGGGCCAUGGAAGAUGAAGAGCUGACCAACCUGAm6ACUGGCUGCACGAGAGCAAGAACUUGCUGAAGAGCUUUGGGGAGUCGGUCCUCAGGAGUGUCAGCCCCGUCCAGGm6ACCUGGACGAUGACACCCCCCCAUCCCCUGCCCACUCUGACAUGCCCUACGAUGCCAGGCAGAACCCCAACUGCAAACCCCCCUACUCCUUCAGCUGCCUCAUAUUUAUGGCCAUCGAGGm6ACUCUCCAACCAAGCGCCUGCCAGUGAAGGAUAUCUACAACUGGAUCUUGGAm6ACAUUUUCCGUAUUUUGCAAAUGCACCUACUGGGUGGAAAAACUCAGUGAGACACAAUUUAUCAUUGAAUAAGUGUUUUAAGAAAGUGGACAAAGAGAGGAGUCAGAGUAUUGGGAAAGGGUCGUUGUGGUGCAUAGACCCAGAGUAUAGACAAAAUCUAAUUCAGGCUUUGAAAAAGACACCUUAUCACCCACACCCACACGUGUUCAAUACACCUCCCACCUGUCCUCAGGCAUAUCAAAGCACAUCAGGUCCACCCAUCUGGCCGGGCAGUACCUUCUUCAAGAGAAAUGGAGCCCUUCUCCAAGUUCCUCCAGGAGUGAUCCAAAAUGGAGCGCGGGUCCUGAGCCGAGGGCUGUUUCCUGGCGUGCGGCCGCUGCCAAUCACUCCCAUUGGGGUGACAGCGGCCAUGAGGAAUGGCAUCACCAGCUGCCGGAUGCGGm6ACUGAGAGUGAGCCAUCUUGUGGCUCCCCAGUGGUCAGCGGAGACCCCAAGGAGGAUCACAACUACAGCAGUGCCAAGUCCUCCAACGCCCGGAGCACCUCGCCCACCAGCGACUCCAUCUCCUCCUCCUCCUCCUCAGCCGACGACCACUAUGAGUUUGCCACCAAGGGGAGCCAGGAGGGCAGCGAGGGCAGCGAGGGGAGCUUCCGGAGCCACGAGAGCCCCAGCGACACGGAAGAGGACGACAGGAAGCACAGCCAGAAGGAGCCCAAGGAUUCUCUGGGGGm6ACAGCGGGUACGCAUCCCAGCACAAGAAGCGCCAGCACUUCGCCAAGGCCAGGAAGGUCCCCAGCGACACACUGCCCCUCAAAAAGAGACGCACCGAAAAGCCCCCCGAGAGCGAUGAUGAGGAGAUGAAAGAAGCGGCAGGGUCCCUCCUGCACUUAGCAGGGAUCCGGUCCUGUUUGAAUAACAUCACCAAUCGGm6ACGGCAAAGGGGCAGAAAGAGCAAAAGGAAACCACAAAAAAUUAAAAACAAGUCACUGAUUUGUUUUGAm6ACUUACGACCAUUUGGUUUCAGCAUGUC
Sequence (MODOMICS CODE ENCODING)	GCGAUCUGCUGCAGCUCGGCCGGGAGACGGCGCGACCCGGCGGCGGGGCCACCCGCGAGUCCAGCGUCGCCGCAGCCCCCCAAUGCGGCCGCGAGAAGCAGCGGGGGGGCAGGCGAUCGAAGGAGCCUUCACGUAAAUGGGUCCAGUCAUGCCUCCCAGUAAGAAGCCAGAAAGCUCAGGAAUUAGUGUCUCCAGUGG2000000006ACUGAGUCAGUGUUACGGGGGCAGCGGUUUCUCCAAGGCCCUUCAGGAAGACGAUGACCUCGACUUUUCUCUGCCUGACAUCCGAUUAGAAGAGGGGGCCAUGGAAGAUGAAGAGCUGACCAACCUGA2000000006ACUGGCUGCACGAGAGCAAGAACUUGCUGAAGAGCUUUGGGGAGUCGGUCCUCAGGAGUGUCAGCCCCGUCCAGG2000000006ACCUGGACGAUGACACCCCCCCAUCCCCUGCCCACUCUGACAUGCCCUACGAUGCCAGGCAGAACCCCAACUGCAAACCCCCCUACUCCUUCAGCUGCCUCAUAUUUAUGGCCAUCGAGG2000000006ACUCUCCAACCAAGCGCCUGCCAGUGAAGGAUAUCUACAACUGGAUCUUGGA2000000006ACAUUUUCCGUAUUUUGCAAAUGCACCUACUGGGUGGAAAAACUCAGUGAGACACAAUUUAUCAUUGAAUAAGUGUUUUAAGAAAGUGGACAAAGAGAGGAGUCAGAGUAUUGGGAAAGGGUCGUUGUGGUGCAUAGACCCAGAGUAUAGACAAAAUCUAAUUCAGGCUUUGAAAAAGACACCUUAUCACCCACACCCACACGUGUUCAAUACACCUCCCACCUGUCCUCAGGCAUAUCAAAGCACAUCAGGUCCACCCAUCUGGCCGGGCAGUACCUUCUUCAAGAGAAAUGGAGCCCUUCUCCAAGUUCCUCCAGGAGUGAUCCAAAAUGGAGCGCGGGUCCUGAGCCGAGGGCUGUUUCCUGGCGUGCGGCCGCUGCCAAUCACUCCCAUUGGGGUGACAGCGGCCAUGAGGAAUGGCAUCACCAGCUGCCGGAUGCGG2000000006ACUGAGAGUGAGCCAUCUUGUGGCUCCCCAGUGGUCAGCGGAGACCCCAAGGAGGAUCACAACUACAGCAGUGCCAAGUCCUCCAACGCCCGGAGCACCUCGCCCACCAGCGACUCCAUCUCCUCCUCCUCCUCCUCAGCCGACGACCACUAUGAGUUUGCCACCAAGGGGAGCCAGGAGGGCAGCGAGGGCAGCGAGGGGAGCUUCCGGAGCCACGAGAGCCCCAGCGACACGGAAGAGGACGACAGGAAGCACAGCCAGAAGGAGCCCAAGGAUUCUCUGGGGG2000000006ACAGCGGGUACGCAUCCCAGCACAAGAAGCGCCAGCACUUCGCCAAGGCCAGGAAGGUCCCCAGCGACACACUGCCCCUCAAAAAGAGACGCACCGAAAAGCCCCCCGAGAGCGAUGAUGAGGAGAUGAAAGAAGCGGCAGGGUCCCUCCUGCACUUAGCAGGGAUCCGGUCCUGUUUGAAUAACAUCACCAAUCGG2000000006ACGGCAAAGGGGCAGAAAGAGCAAAAGGAAACCACAAAAAAUUAAAAACAAGUCACUGAUUUGUUUUGA2000000006ACUUACGACCAUUUGGUUUCAGCAUGUC

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	199	327	402	522	574	1016	1302	1499	1568
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	14:89412414:-	14:89412286:-	14:89412211:-	14:89412091:-	14:89412039:-	14:89162941:-	14:89162655:-	14:89162458:-	14:89162389:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se WiQcrNTGZHPT BsCW7emuRX7M KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML	6AyXsheySjfx 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL KTLz8piFYdwC WiQcrNTGZHPT Lny8GcCeVGc9	3TeAZFYFxgvp 4HMi5ykupT9V 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL nfCHyrYzE6fB Lny8GcCeVGc9 UKen6WEino9G	6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BkoLW2CBToyL	6AyXsheySjfx 6UuHp6YApVKv Ap2q43bQLNek jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3	6UuHp6YApVKv Ap2q43bQLNek msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	jNkxUQNx8GRd VyCX26p5UBRL UKen6WEino9G