General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000554180
Gene ID:	ENSG00000042088
Gene Name:	TDP1
Sequence (UNICHARACTER ENCODING)	GCGCAUGCGCGGCGGCCGCCGAAGGGGCGGGAUCCGAGGCAAGCGUUGGUUCUGUGCGCCUCAGGAGUAUAAUGUCUCAGGAAGGCGAUUAUGGGAGGUGGACCAUAUCUAGUAGUGAUGAAAGUGAGGAAGAAAAGCCAAAACCAGACAAGCCAUCUACCUCUUCUCUUCUCUGUGCCAGGCAAGGAGCAGCAAAUGAGCCCAGGUACACCUGUUCCGAGGCCCAGAAAGCUGCACACAAGAGGAAAAUAUCACCUGUGAAAUUCAGCAAUACAGAUUCAGUUUUACCUCCCAAAAGGCAGAAAAGCGGUUCCCAGGAGGACCUCGGCUGGUGUCUGUCCAGCAGUGAUGAUGAGCUGCAACCAGAAAUGCCGCAGAAGCAGGCUGAGAAAGUGGUGAUCAAAAAGGAGAAAGACAUCUCUGCUCCCAAUGACGGCACUGCCCAAAGAЖCUGAAAAUCAUGGCGCUCCCGCCUGCCACAGGCUCAAAGAGGAGGAAGACGAGUAUGAGЖCAUCAGGGGAGGGCCAGGЖCAUUUGGGЖCAUGCUGGAUAAAGGGAACCCCUUCCAGUUUUACCUCACUAGAGUCUCUGGAGUUAAGCCAAAGUAUAACUCUGGAGCCCUCCACAUCAAGGAUAUUUUAUCUCCUPUAUUUGGGACGCUUGUUUCUUCAGCUCAGUUUAACUACUGCUUUGACGUGGACUGGCUCGUAAAЖCAGUAUCCACCAGAGUUCAGGAAGAAGCCAAUCCUGCUUGUGCAUGGUGAUAAGCGAGAGGCUAAGGCUCACCPCCAUGCCCAGGCCAAGCCUUACGAGAACAUCUCUCUCUGCCAGGCAAAGUUGGAUAUUGCGUUUGGAACACACCACACGAAAAUGAUGCUGCUGCUCUAUGAAGAAGGCCUCCGGGUUGUCAUACA
Sequence (SHORT NAMES ENCODING)	GCGCAUGCGCGGCGGCCGCCGAAGGGGCGGGAUCCGAGGCAAGCGUUGGUUCUGUGCGCCUCAGGAGUAUAAUGUCUCAGGAAGGCGAUUAUGGGAGGUGGACCAUAUCUAGUAGUGAUGAAAGUGAGGAAGAAAAGCCAAAACCAGACAAGCCAUCUACCUCUUCUCUUCUCUGUGCCAGGCAAGGAGCAGCAAAUGAGCCCAGGUACACCUGUUCCGAGGCCCAGAAAGCUGCACACAAGAGGAAAAUAUCACCUGUGAAAUUCAGCAAUACAGAUUCAGUUUUACCUCCCAAAAGGCAGAAAAGCGGUUCCCAGGAGGACCUCGGCUGGUGUCUGUCCAGCAGUGAUGAUGAGCUGCAACCAGAAAUGCCGCAGAAGCAGGCUGAGAAAGUGGUGAUCAAAAAGGAGAAAGACAUCUCUGCUCCCAAUGACGGCACUGCCCAAAGAm6ACUGAAAAUCAUGGCGCUCCCGCCUGCCACAGGCUCAAAGAGGAGGAAGACGAGUAUGAGm6ACAUCAGGGGAGGGCCAGGm6ACAUUUGGGm6ACAUGCUGGAUAAAGGGAACCCCUUCCAGUUUUACCUCACUAGAGUCUCUGGAGUUAAGCCAAAGUAUAACUCUGGAGCCCUCCACAUCAAGGAUAUUUUAUCUCCUYUAUUUGGGACGCUUGUUUCUUCAGCUCAGUUUAACUACUGCUUUGACGUGGACUGGCUCGUAAAm6ACAGUAUCCACCAGAGUUCAGGAAGAAGCCAAUCCUGCUUGUGCAUGGUGAUAAGCGAGAGGCUAAGGCUCACCYCCAUGCCCAGGCCAAGCCUUACGAGAACAUCUCUCUCUGCCAGGCAAAGUUGGAUAUUGCGUUUGGAACACACCACACGAAAAUGAUGCUGCUGCUCUAUGAAGAAGGCCUCCGGGUUGUCAUACA
Sequence (MODOMICS CODE ENCODING)	GCGCAUGCGCGGCGGCCGCCGAAGGGGCGGGAUCCGAGGCAAGCGUUGGUUCUGUGCGCCUCAGGAGUAUAAUGUCUCAGGAAGGCGAUUAUGGGAGGUGGACCAUAUCUAGUAGUGAUGAAAGUGAGGAAGAAAAGCCAAAACCAGACAAGCCAUCUACCUCUUCUCUUCUCUGUGCCAGGCAAGGAGCAGCAAAUGAGCCCAGGUACACCUGUUCCGAGGCCCAGAAAGCUGCACACAAGAGGAAAAUAUCACCUGUGAAAUUCAGCAAUACAGAUUCAGUUUUACCUCCCAAAAGGCAGAAAAGCGGUUCCCAGGAGGACCUCGGCUGGUGUCUGUCCAGCAGUGAUGAUGAGCUGCAACCAGAAAUGCCGCAGAAGCAGGCUGAGAAAGUGGUGAUCAAAAAGGAGAAAGACAUCUCUGCUCCCAAUGACGGCACUGCCCAAAGA2000000006ACUGAAAAUCAUGGCGCUCCCGCCUGCCACAGGCUCAAAGAGGAGGAAGACGAGUAUGAG2000000006ACAUCAGGGGAGGGCCAGG2000000006ACAUUUGGG2000000006ACAUGCUGGAUAAAGGGAACCCCUUCCAGUUUUACCUCACUAGAGUCUCUGGAGUUAAGCCAAAGUAUAACUCUGGAGCCCUCCACAUCAAGGAUAUUUUAUCUCCU2000000009UUAUUUGGGACGCUUGUUUCUUCAGCUCAGUUUAACUACUGCUUUGACGUGGACUGGCUCGUAAA2000000006ACAGUAUCCACCAGAGUUCAGGAAGAAGCCAAUCCUGCUUGUGCAUGGUGAUAAGCGAGAGGCUAAGGCUCACC2000000009UCCAUGCCCAGGCCAAGCCUUACGAGAACAUCUCUCUCUGCCAGGCAAAGUUGGAUAUUGCGUUUGGAACACACCACACGAAAAUGAUGCUGCUGCUCUAUGAAGAAGGCCUCCGGGUUGUCAUACA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	450	510	529	538	645	710	784
Modification Positions	m6A	m6A	m6A	m6A	Y	m6A	Y
Genomic Coordinates	14:89963493:+	14:89963553:+	14:89963572:+	14:89963581:+	14:89966161:+	14:89967402:+	14:89971228:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	jNkxUQNx8GRd msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL aJksAshEgQ8U D6ncpa2PPWj3 BtsJQJ3DteUq iezFbUdmY3A6 Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 Yfn77uLS5tv8