Modomics - A Database of RNA Modifications

General Data

RNA Type lncRNA
Original Source Sci-ModoM
Transcript ID: ENST00000557373
Gene ID: ENSG00000258738
Gene Name: BAZ1A-AS1
Sequence (UNICHARACTER ENCODING) GGAGGCAGAGAACCGCGGGCCCGGGGGCCACCCGUCACUUUCAAGUCGCCCCGCCAGAAGCCCAGGGCGAGGAAAAGGAGAGAGACAAAAGAGCGCUGCGGGGGGAGUCCCCACACCCCCCGCGGCCCCGCACACGGCCCGGCUCUUACUCGUAGUGGCGGAAGAUCUCGUUGGUGЖCUUUACAGUAGAAAACUUCCUCGUCGGGCCGCAGGUCCGCGGGCGGCUUCUGUCUCACAAACGGCUUUCGGUGUAGCAGCGGCAUCUCCCGUCCGCCCGCGGGCUCGCCUGGЖCCCUCGGCCGCCCGCGCCGGCCCCGCUUCCCUAUCAAAAUUGGAGGGAAAGGAAAGCCGGUAAGGUGGGGAGCCCUCGGCGGCAGCGUGGGCCGGUCCGCGCGCUGGGAGAAGCUCGGCUGCCUUUUGUGUGЖCUGACGCGCCGCGGCCGCUACCGGAGCCGAGUUCGUUCCUGCCGCUGCCCGGGUGUCGAGCGAGCGGAGCCGCCGCCGCCCCUGCCCCCCGAGCGCGCCCUACCUCCUCUCGUCCUGCCGCCGCCUCACAAUGGGGCAGGACGCCCCGCCGCGGGGGGCAGUGCGGGAGCGGCGGCGGCCCCCUCCCCCAGCGCCGGCUCCUCGCCCGCCGCCGCCGCCAGGCUCACAACGUGCUCGGCGCGCAGCUGGCCGGCCGGCCAGCCCAACGCCGCCAGAGCGCUCGCCGCGGGCGGACCCCGGAGCUGCUCCGCUUUGUUCCCGGCUCGCCUCCACUUCCCCGCCGGCGCCGGCCGGCUCCCGAGCGACCCUCACCUGCGAUCACGCCGACUGCCACUUGUCCACCUUCUCCACUACAAAGGCAACGAGGGGAGACCCCGUCCUCCCAGGGGACCGCCUCUCUCCGGCCCCGCCGCGCCCCUGGCUGCCGCUUCUCCCGCUGCCACUGCCCGACUCCGCGCGGGGAAUUGCGUCCCACCGCCACUUCCCCGCCUCUCGGAGCUCCUGGGAAGUUUCUGAUCUACUUUCGGCUCUGAAGGAGGAAGAGCUGUUGGGAGGAGCUUUUCACUCCUCGCUUCUACCUUUUUAUUGGCUACUCGAUGЖCUUUUACAGCCUGUCACUGAUACAGGAAGAGACAGCGGAGAGCCUGGGAGAACUACAUUAUUAAUUAAUGGAGCAACCCCUCGUGAAGAUUCAGAAGCAUCCUCCAUGUUUGAGAUUAUCAGCCAAAAGAUCUAGGGAAAGCGCUGGGGGUUCAUAAACACAUGGCUAACAAAGUAAAGCCUUCAAGUCUGGCACAGЖCUCUUGACUACACGAUGGGAAAAGGGAUUCCAAUUACGAUUUAACUUGUAUUUUAAAGAUGAGAAAAGAAAUGAAUAAGAAAAUUUGUUGCUAUUUUUCUUCUUCCAAAUUAGAAUCUAUAUCUCUAAAAAUACUUUGCAUGUUUAGUAAACAUCCAUCUUGAACAGAAGAUACCUUGACAUCAGUUCUAUUUAAUACUUAUGGCAAUUAAGAGAUUUAGAAAGCAGAGGAAAAGACCAAAAAAAAAGUAUGUGUUACAAAGUGUCAUCAUGCUUGUAGGACCCCAGCAUUCUUGAAACUAACGCACCUUUAAAAAGUAAUAUUUACACUGCUGUAAAUAUUUGCAAAGUAUCAAUGUUUAAUUCACUUAGAAUUUUAAGGAUUAUGGAUUUACUAGCGAAAAUUCCCCUAAAGCAACUUUCCCAUAUCAGUAACUUUUAUUUAGGGAAACAAGUUUAAUGUACAUAAUACAUGUGACCUUGGAAUUCAAUAGAAUUUUCGAAACUAGAAGUAACUCAGAACGUUCACUAGAUGUGUUUUAAAGUCUUUUUUGAUACUGUCCUUAACAUUUGCUUAUUUGCAAAUUAAUAUGUAAGAAUGAGUCUAAAAGUAAGUUUUAGGAAUGGUUAUUCGACAAAGAUGUUAUUCCUAUUACCAAUACUGCGAAAUGAUAAUUACAGAAACAAUGUGGGAUCCGUUUUAUAACUUCAAAUUUAAGUUCCUUUGUACUUUGGAGCAGAAAAUGUAAGAAAUCGAAAUCAAGAGUUAGUAUUUUUUAUCUUUCAGGCUGGCUUUAACUGUUCAUACACCUAGCAAAAUAAACAUUUGUGAAAGGC
Sequence (SHORT NAMES ENCODING) GGAGGCAGAGAACCGCGGGCCCGGGGGCCACCCGUCACUUUCAAGUCGCCCCGCCAGAAGCCCAGGGCGAGGAAAAGGAGAGAGACAAAAGAGCGCUGCGGGGGGAGUCCCCACACCCCCCGCGGCCCCGCACACGGCCCGGCUCUUACUCGUAGUGGCGGAAGAUCUCGUUGGUGm6ACUUUACAGUAGAAAACUUCCUCGUCGGGCCGCAGGUCCGCGGGCGGCUUCUGUCUCACAAACGGCUUUCGGUGUAGCAGCGGCAUCUCCCGUCCGCCCGCGGGCUCGCCUGGm6ACCCUCGGCCGCCCGCGCCGGCCCCGCUUCCCUAUCAAAAUUGGAGGGAAAGGAAAGCCGGUAAGGUGGGGAGCCCUCGGCGGCAGCGUGGGCCGGUCCGCGCGCUGGGAGAAGCUCGGCUGCCUUUUGUGUGm6ACUGACGCGCCGCGGCCGCUACCGGAGCCGAGUUCGUUCCUGCCGCUGCCCGGGUGUCGAGCGAGCGGAGCCGCCGCCGCCCCUGCCCCCCGAGCGCGCCCUACCUCCUCUCGUCCUGCCGCCGCCUCACAAUGGGGCAGGACGCCCCGCCGCGGGGGGCAGUGCGGGAGCGGCGGCGGCCCCCUCCCCCAGCGCCGGCUCCUCGCCCGCCGCCGCCGCCAGGCUCACAACGUGCUCGGCGCGCAGCUGGCCGGCCGGCCAGCCCAACGCCGCCAGAGCGCUCGCCGCGGGCGGACCCCGGAGCUGCUCCGCUUUGUUCCCGGCUCGCCUCCACUUCCCCGCCGGCGCCGGCCGGCUCCCGAGCGACCCUCACCUGCGAUCACGCCGACUGCCACUUGUCCACCUUCUCCACUACAAAGGCAACGAGGGGAGACCCCGUCCUCCCAGGGGACCGCCUCUCUCCGGCCCCGCCGCGCCCCUGGCUGCCGCUUCUCCCGCUGCCACUGCCCGACUCCGCGCGGGGAAUUGCGUCCCACCGCCACUUCCCCGCCUCUCGGAGCUCCUGGGAAGUUUCUGAUCUACUUUCGGCUCUGAAGGAGGAAGAGCUGUUGGGAGGAGCUUUUCACUCCUCGCUUCUACCUUUUUAUUGGCUACUCGAUGm6ACUUUUACAGCCUGUCACUGAUACAGGAAGAGACAGCGGAGAGCCUGGGAGAACUACAUUAUUAAUUAAUGGAGCAACCCCUCGUGAAGAUUCAGAAGCAUCCUCCAUGUUUGAGAUUAUCAGCCAAAAGAUCUAGGGAAAGCGCUGGGGGUUCAUAAACACAUGGCUAACAAAGUAAAGCCUUCAAGUCUGGCACAGm6ACUCUUGACUACACGAUGGGAAAAGGGAUUCCAAUUACGAUUUAACUUGUAUUUUAAAGAUGAGAAAAGAAAUGAAUAAGAAAAUUUGUUGCUAUUUUUCUUCUUCCAAAUUAGAAUCUAUAUCUCUAAAAAUACUUUGCAUGUUUAGUAAACAUCCAUCUUGAACAGAAGAUACCUUGACAUCAGUUCUAUUUAAUACUUAUGGCAAUUAAGAGAUUUAGAAAGCAGAGGAAAAGACCAAAAAAAAAGUAUGUGUUACAAAGUGUCAUCAUGCUUGUAGGACCCCAGCAUUCUUGAAACUAACGCACCUUUAAAAAGUAAUAUUUACACUGCUGUAAAUAUUUGCAAAGUAUCAAUGUUUAAUUCACUUAGAAUUUUAAGGAUUAUGGAUUUACUAGCGAAAAUUCCCCUAAAGCAACUUUCCCAUAUCAGUAACUUUUAUUUAGGGAAACAAGUUUAAUGUACAUAAUACAUGUGACCUUGGAAUUCAAUAGAAUUUUCGAAACUAGAAGUAACUCAGAACGUUCACUAGAUGUGUUUUAAAGUCUUUUUUGAUACUGUCCUUAACAUUUGCUUAUUUGCAAAUUAAUAUGUAAGAAUGAGUCUAAAAGUAAGUUUUAGGAAUGGUUAUUCGACAAAGAUGUUAUUCCUAUUACCAAUACUGCGAAAUGAUAAUUACAGAAACAAUGUGGGAUCCGUUUUAUAACUUCAAAUUUAAGUUCCUUUGUACUUUGGAGCAGAAAAUGUAAGAAAUCGAAAUCAAGAGUUAGUAUUUUUUAUCUUUCAGGCUGGCUUUAACUGUUCAUACACCUAGCAAAAUAAACAUUUGUGAAAGGC
Sequence (MODOMICS CODE ENCODING) GGAGGCAGAGAACCGCGGGCCCGGGGGCCACCCGUCACUUUCAAGUCGCCCCGCCAGAAGCCCAGGGCGAGGAAAAGGAGAGAGACAAAAGAGCGCUGCGGGGGGAGUCCCCACACCCCCCGCGGCCCCGCACACGGCCCGGCUCUUACUCGUAGUGGCGGAAGAUCUCGUUGGUG2000000006ACUUUACAGUAGAAAACUUCCUCGUCGGGCCGCAGGUCCGCGGGCGGCUUCUGUCUCACAAACGGCUUUCGGUGUAGCAGCGGCAUCUCCCGUCCGCCCGCGGGCUCGCCUGG2000000006ACCCUCGGCCGCCCGCGCCGGCCCCGCUUCCCUAUCAAAAUUGGAGGGAAAGGAAAGCCGGUAAGGUGGGGAGCCCUCGGCGGCAGCGUGGGCCGGUCCGCGCGCUGGGAGAAGCUCGGCUGCCUUUUGUGUG2000000006ACUGACGCGCCGCGGCCGCUACCGGAGCCGAGUUCGUUCCUGCCGCUGCCCGGGUGUCGAGCGAGCGGAGCCGCCGCCGCCCCUGCCCCCCGAGCGCGCCCUACCUCCUCUCGUCCUGCCGCCGCCUCACAAUGGGGCAGGACGCCCCGCCGCGGGGGGCAGUGCGGGAGCGGCGGCGGCCCCCUCCCCCAGCGCCGGCUCCUCGCCCGCCGCCGCCGCCAGGCUCACAACGUGCUCGGCGCGCAGCUGGCCGGCCGGCCAGCCCAACGCCGCCAGAGCGCUCGCCGCGGGCGGACCCCGGAGCUGCUCCGCUUUGUUCCCGGCUCGCCUCCACUUCCCCGCCGGCGCCGGCCGGCUCCCGAGCGACCCUCACCUGCGAUCACGCCGACUGCCACUUGUCCACCUUCUCCACUACAAAGGCAACGAGGGGAGACCCCGUCCUCCCAGGGGACCGCCUCUCUCCGGCCCCGCCGCGCCCCUGGCUGCCGCUUCUCCCGCUGCCACUGCCCGACUCCGCGCGGGGAAUUGCGUCCCACCGCCACUUCCCCGCCUCUCGGAGCUCCUGGGAAGUUUCUGAUCUACUUUCGGCUCUGAAGGAGGAAGAGCUGUUGGGAGGAGCUUUUCACUCCUCGCUUCUACCUUUUUAUUGGCUACUCGAUG2000000006ACUUUUACAGCCUGUCACUGAUACAGGAAGAGACAGCGGAGAGCCUGGGAGAACUACAUUAUUAAUUAAUGGAGCAACCCCUCGUGAAGAUUCAGAAGCAUCCUCCAUGUUUGAGAUUAUCAGCCAAAAGAUCUAGGGAAAGCGCUGGGGGUUCAUAAACACAUGGCUAACAAAGUAAAGCCUUCAAGUCUGGCACAG2000000006ACUCUUGACUACACGAUGGGAAAAGGGAUUCCAAUUACGAUUUAACUUGUAUUUUAAAGAUGAGAAAAGAAAUGAAUAAGAAAAUUUGUUGCUAUUUUUCUUCUUCCAAAUUAGAAUCUAUAUCUCUAAAAAUACUUUGCAUGUUUAGUAAACAUCCAUCUUGAACAGAAGAUACCUUGACAUCAGUUCUAUUUAAUACUUAUGGCAAUUAAGAGAUUUAGAAAGCAGAGGAAAAGACCAAAAAAAAAGUAUGUGUUACAAAGUGUCAUCAUGCUUGUAGGACCCCAGCAUUCUUGAAACUAACGCACCUUUAAAAAGUAAUAUUUACACUGCUGUAAAUAUUUGCAAAGUAUCAAUGUUUAAUUCACUUAGAAUUUUAAGGAUUAUGGAUUUACUAGCGAAAAUUCCCCUAAAGCAACUUUCCCAUAUCAGUAACUUUUAUUUAGGGAAACAAGUUUAAUGUACAUAAUACAUGUGACCUUGGAAUUCAAUAGAAUUUUCGAAACUAGAAGUAACUCAGAACGUUCACUAGAUGUGUUUUAAAGUCUUUUUUGAUACUGUCCUUAACAUUUGCUUAUUUGCAAAUUAAUAUGUAAGAAUGAGUCUAAAAGUAAGUUUUAGGAAUGGUUAUUCGACAAAGAUGUUAUUCCUAUUACCAAUACUGCGAAAUGAUAAUUACAGAAACAAUGUGGGAUCCGUUUUAUAACUUCAAAUUUAAGUUCCUUUGUACUUUGGAGCAGAAAAUGUAAGAAAUCGAAAUCAAGAGUUAGUAUUUUUUAUCUUUCAGGCUGGCUUUAACUGUUCAUACACCUAGCAAAAUAAACAUUUGUGAAAGGC

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 177 290 423 1083 1281
Modification Positions m6A m6A m6A m6A m6A
Genomic Coordinates 14:34874519:+ 14:34874632:+ 14:34874765:+ 14:34875425:+ 14:34875623:+
Level of Experimental Evidence 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs msuJfBpJvM5H
VyCX26p5UBRL
WdHxkJGRmFxn
aivdrAsbdKEU
Ap2q43bQLNek
gBgcfFQ5WN9C
gZuvgwMuBfgh
Mg9GixDBFQAT
msuJfBpJvM5H
QmcpiJ88DBDn
QpiKdbVikVz2
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
8cMbzB4aD5Se
5Nnepx5V7yHo
Ap2q43bQLNek
gZuvgwMuBfgh
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL
WdHxkJGRmFxn
5FhTyQVy2tKW
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
5FhTyQVy2tKW
aHkqKEJkRYyb
KRfQJWH4K5KH
msuJfBpJvM5H
VL7zkHvkfkoB
VyCX26p5UBRL