General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000559087
Gene ID:	ENSG00000125378
Gene Name:	BMP4
Sequence (UNICHARACTER ENCODING)	GGCAGAGGAGGAGGGAGGGAGGGAAGGAGCGCGGAGCCCGGCCCGGAAGCUAGGAGCCAUUCCGUAGUGCCAUCCCGAGCAACGCACUGCUGCAGCUUCCCUGAGCCUUUCCAGCAAGUUUGUUCAAGAUUGGCUGUCAAGAAUCAUGGACUGUUAUUAUAUGCCUUGUUUUCUGUCAAGACACCAUGAUUCCUGGUAACCGAAUGCUGAUGGUCGUUUUAUUAUGCCAAGUCCUGCUAGGAGGCGCGAGCCAUGCUAGUUUGAUACCUGAGACGGGGAAGAAAAAAGUCGCCGAGAUUCAGGGCCACGCGGGAGGACGCCGCUCAGGGCAGAGCCAUGAGCUCCUGCGGGACUUCGAGGCGACACUUCUGCAGAUGUUUGGGCUGCGCCGCCGCCCGCAGCCUAGCAAGAGUGCCGUCAUUCCGGACUACAUGCGGGAUCUPUACCGGCUUCAGUCUGGGGAGGAGGAGGAAGAGCAGAUCCACAGCACUGGUCUUGAGUAUCCUGAGCGCCCGGCCAGCCGGGCCAACACCGUGAGGAGCUUCCACCACGAAGAACAUCUGGAGAACAUCCCAGGGACCAGUGAAAACUCUGCUUUUCGUUUCCUCUUUAACCUCAGCAGCAUCCCUGAGAACGAGGUGAUCUCCUCUGCAGAGCUUCGGCUCUUCCGGGAGCAGGUGGACCAGGGCCCUGAUUGGGAAAGGGGCUUCCACCGUAUAAЖCAUUUAUGAGGUUAUGAAGCCCCCAGCAGAAGUGGUGCCUGGGCACCUCAUCACACGACUACUGGACACGAGЖCUGGUCCACCACAAUGUGACACGGUGGGAAACUUUUGAUGUGAGCCCUGCGGUCCUUCGCUGGACCCGGGAGAAGCAGCCAAACUAUGGGCUAGCCAUUGAGGUGACUCACCUCCAUCAGЖCUCGGACCCACCAGGGCCAGCAUGUCAGGAUUAGCCGAUCGUUACCUCAAGGGAGUGGGAAUUGGGCCCAGCUCCGGCCCCUCCUGGUCACCUUUGGCCAUGAUGGCCGGGGCCAUGCCUUGACCCGACGCCGGAGGGCCAAGCGUAGCCCUAAGCAUCACUCACAGCGGGCCAGGAAGAAGAAUAAGAЖCUGCCGGCGCCACUCGCUCUAUGUGGЖCUUCAGCGAUGUGGGCUGGAAUGЖCUGGAUUGUGGCCCCACCAGGCUACCAGGCCUUCUACUGCCAUGGGGЖCUGCCCCUUUCCACUGGCUGACCACCUCAACUCAACCAACCAUGCCAUUGUGCAGACCCUGGUCAAUUCUGUCAAUUCCAGUAUCCCCAAAGCCUGUUGUGUGCCCACUGAЖCUGAGUGCCAUCUCCAUGCUGUACCUGGAUGAGUAUGAUAAGGUGGUACUGAAAAAUUAUCAGGAGAUGGUAGUAGAGGGAUGUGGGUGCCGCUGAGAUCAGGCAGUCCUUGAGGAUAGACAGAUAUACACACCACACACACACACCACAUACACCACACACACACGUUCCCAPCCACUCACCCACACACUACACAGACUGCUUCCUUAUAGCUGGЖCUUUUAUUUAAAAAAAAAAAAAAAAAAGGAAAAAAUCCCUAAACAUUCACCUUGACCUUAUUUAUGACUUUACGUGCAAAUGUUUUGACCAUAUUGAUCAUAUAUUUUGACAAAAUAUAUUUAUAACUACGUAUUAAAAGAAAAAAAUAAAAUGAGUCAUUAUUUUAAAGGUAAA
Sequence (SHORT NAMES ENCODING)	GGCAGAGGAGGAGGGAGGGAGGGAAGGAGCGCGGAGCCCGGCCCGGAAGCUAGGAGCCAUUCCGUAGUGCCAUCCCGAGCAACGCACUGCUGCAGCUUCCCUGAGCCUUUCCAGCAAGUUUGUUCAAGAUUGGCUGUCAAGAAUCAUGGACUGUUAUUAUAUGCCUUGUUUUCUGUCAAGACACCAUGAUUCCUGGUAACCGAAUGCUGAUGGUCGUUUUAUUAUGCCAAGUCCUGCUAGGAGGCGCGAGCCAUGCUAGUUUGAUACCUGAGACGGGGAAGAAAAAAGUCGCCGAGAUUCAGGGCCACGCGGGAGGACGCCGCUCAGGGCAGAGCCAUGAGCUCCUGCGGGACUUCGAGGCGACACUUCUGCAGAUGUUUGGGCUGCGCCGCCGCCCGCAGCCUAGCAAGAGUGCCGUCAUUCCGGACUACAUGCGGGAUCUYUACCGGCUUCAGUCUGGGGAGGAGGAGGAAGAGCAGAUCCACAGCACUGGUCUUGAGUAUCCUGAGCGCCCGGCCAGCCGGGCCAACACCGUGAGGAGCUUCCACCACGAAGAACAUCUGGAGAACAUCCCAGGGACCAGUGAAAACUCUGCUUUUCGUUUCCUCUUUAACCUCAGCAGCAUCCCUGAGAACGAGGUGAUCUCCUCUGCAGAGCUUCGGCUCUUCCGGGAGCAGGUGGACCAGGGCCCUGAUUGGGAAAGGGGCUUCCACCGUAUAAm6ACAUUUAUGAGGUUAUGAAGCCCCCAGCAGAAGUGGUGCCUGGGCACCUCAUCACACGACUACUGGACACGAGm6ACUGGUCCACCACAAUGUGACACGGUGGGAAACUUUUGAUGUGAGCCCUGCGGUCCUUCGCUGGACCCGGGAGAAGCAGCCAAACUAUGGGCUAGCCAUUGAGGUGACUCACCUCCAUCAGm6ACUCGGACCCACCAGGGCCAGCAUGUCAGGAUUAGCCGAUCGUUACCUCAAGGGAGUGGGAAUUGGGCCCAGCUCCGGCCCCUCCUGGUCACCUUUGGCCAUGAUGGCCGGGGCCAUGCCUUGACCCGACGCCGGAGGGCCAAGCGUAGCCCUAAGCAUCACUCACAGCGGGCCAGGAAGAAGAAUAAGAm6ACUGCCGGCGCCACUCGCUCUAUGUGGm6ACUUCAGCGAUGUGGGCUGGAAUGm6ACUGGAUUGUGGCCCCACCAGGCUACCAGGCCUUCUACUGCCAUGGGGm6ACUGCCCCUUUCCACUGGCUGACCACCUCAACUCAACCAACCAUGCCAUUGUGCAGACCCUGGUCAAUUCUGUCAAUUCCAGUAUCCCCAAAGCCUGUUGUGUGCCCACUGAm6ACUGAGUGCCAUCUCCAUGCUGUACCUGGAUGAGUAUGAUAAGGUGGUACUGAAAAAUUAUCAGGAGAUGGUAGUAGAGGGAUGUGGGUGCCGCUGAGAUCAGGCAGUCCUUGAGGAUAGACAGAUAUACACACCACACACACACACCACAUACACCACACACACACGUUCCCAYCCACUCACCCACACACUACACAGACUGCUUCCUUAUAGCUGGm6ACUUUUAUUUAAAAAAAAAAAAAAAAAAGGAAAAAAUCCCUAAACAUUCACCUUGACCUUAUUUAUGACUUUACGUGCAAAUGUUUUGACCAUAUUGAUCAUAUAUUUUGACAAAAUAUAUUUAUAACUACGUAUUAAAAGAAAAAAAUAAAAUGAGUCAUUAUUUUAAAGGUAAA
Sequence (MODOMICS CODE ENCODING)	GGCAGAGGAGGAGGGAGGGAGGGAAGGAGCGCGGAGCCCGGCCCGGAAGCUAGGAGCCAUUCCGUAGUGCCAUCCCGAGCAACGCACUGCUGCAGCUUCCCUGAGCCUUUCCAGCAAGUUUGUUCAAGAUUGGCUGUCAAGAAUCAUGGACUGUUAUUAUAUGCCUUGUUUUCUGUCAAGACACCAUGAUUCCUGGUAACCGAAUGCUGAUGGUCGUUUUAUUAUGCCAAGUCCUGCUAGGAGGCGCGAGCCAUGCUAGUUUGAUACCUGAGACGGGGAAGAAAAAAGUCGCCGAGAUUCAGGGCCACGCGGGAGGACGCCGCUCAGGGCAGAGCCAUGAGCUCCUGCGGGACUUCGAGGCGACACUUCUGCAGAUGUUUGGGCUGCGCCGCCGCCCGCAGCCUAGCAAGAGUGCCGUCAUUCCGGACUACAUGCGGGAUCU2000000009UUACCGGCUUCAGUCUGGGGAGGAGGAGGAAGAGCAGAUCCACAGCACUGGUCUUGAGUAUCCUGAGCGCCCGGCCAGCCGGGCCAACACCGUGAGGAGCUUCCACCACGAAGAACAUCUGGAGAACAUCCCAGGGACCAGUGAAAACUCUGCUUUUCGUUUCCUCUUUAACCUCAGCAGCAUCCCUGAGAACGAGGUGAUCUCCUCUGCAGAGCUUCGGCUCUUCCGGGAGCAGGUGGACCAGGGCCCUGAUUGGGAAAGGGGCUUCCACCGUAUAA2000000006ACAUUUAUGAGGUUAUGAAGCCCCCAGCAGAAGUGGUGCCUGGGCACCUCAUCACACGACUACUGGACACGAG2000000006ACUGGUCCACCACAAUGUGACACGGUGGGAAACUUUUGAUGUGAGCCCUGCGGUCCUUCGCUGGACCCGGGAGAAGCAGCCAAACUAUGGGCUAGCCAUUGAGGUGACUCACCUCCAUCAG2000000006ACUCGGACCCACCAGGGCCAGCAUGUCAGGAUUAGCCGAUCGUUACCUCAAGGGAGUGGGAAUUGGGCCCAGCUCCGGCCCCUCCUGGUCACCUUUGGCCAUGAUGGCCGGGGCCAUGCCUUGACCCGACGCCGGAGGGCCAAGCGUAGCCCUAAGCAUCACUCACAGCGGGCCAGGAAGAAGAAUAAGA2000000006ACUGCCGGCGCCACUCGCUCUAUGUGG2000000006ACUUCAGCGAUGUGGGCUGGAAUG2000000006ACUGGAUUGUGGCCCCACCAGGCUACCAGGCCUUCUACUGCCAUGGGG2000000006ACUGCCCCUUUCCACUGGCUGACCACCUCAACUCAACCAACCAUGCCAUUGUGCAGACCCUGGUCAAUUCUGUCAAUUCCAGUAUCCCCAAAGCCUGUUGUGUGCCCACUGA2000000006ACUGAGUGCCAUCUCCAUGCUGUACCUGGAUGAGUAUGAUAAGGUGGUACUGAAAAAUUAUCAGGAGAUGGUAGUAGAGGGAUGUGGGUGCCGCUGAGAUCAGGCAGUCCUUGAGGAUAGACAGAUAUACACACCACACACACACACCACAUACACCACACACACACGUUCCCA2000000009UCCACUCACCCACACACUACACAGACUGCUUCCUUAUAGCUGG2000000006ACUUUUAUUUAAAAAAAAAAAAAAAAAAGGAAAAAAUCCCUAAACAUUCACCUUGACCUUAUUUAUGACUUUACGUGCAAAUGUUUUGACCAUAUUGAUCAUAUAUUUUGACAAAAUAUAUUUAUAACUACGUAUUAAAAGAAAAAAAUAAAAUGAGUCAUUAUUUUAAAGGUAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	443	721	794	915	1105	1132	1156	1204	1316	1490	1533
Modification Positions	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A
Genomic Coordinates	14:53951965:-	14:53950723:-	14:53950650:-	14:53950529:-	14:53950339:-	14:53950312:-	14:53950288:-	14:53950240:-	14:53950128:-	14:53949954:-	14:53949911:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	bXBqJigD9oV3 Yfn77uLS5tv8	Ap2q43bQLNek msuJfBpJvM5H VyCX26p5UBRL Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx Ap2q43bQLNek msuJfBpJvM5H V5PvfiKsgFMd VyCX26p5UBRL bXBqJigD9oV3 Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb Ap2q43bQLNek gZuvgwMuBfgh msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VyCX26p5UBRL nfCHyrYzE6fB bXBqJigD9oV3 Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx Ap2q43bQLNek msuJfBpJvM5H nGifePrmgHfe V5PvfiKsgFMd VyCX26p5UBRL bXBqJigD9oV3 Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb Ap2q43bQLNek msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn V5PvfiKsgFMd VyCX26p5UBRL nfCHyrYzE6fB bXBqJigD9oV3 Yfn77uLS5tv8	6AyXsheySjfx Ap2q43bQLNek Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn VyCX26p5UBRL bXBqJigD9oV3 Yfn77uLS5tv8	5Nnepx5V7yHo 6AyXsheySjfx aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL bXBqJigD9oV3 Yfn77uLS5tv8	6AyXsheySjfx Ap2q43bQLNek msuJfBpJvM5H QmcpiJ88DBDn VyCX26p5UBRL bXBqJigD9oV3 Yfn77uLS5tv8	bXBqJigD9oV3 Yfn77uLS5tv8	93arJtwJmuS9 nfCHyrYzE6fB bXBqJigD9oV3 kx7BHU7ZycYE Yfn77uLS5tv8