Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000555702
Gene ID: ENSG00000155465
Gene Name: SLC7A7
Sequence (UNICHARACTER ENCODING) GUUUUCCUGUUUUCCAUUUCAGUCCCCGUUACCCUCUGCUUUUUCUGCUCCUCAGAGUCAACAGCUGUUGCAGCAUGAGCGAUACGCUUGGUUCUCCUAACUAGCACCUUCCCCUCUCCCCUGACUCAGCUGGUAGCCCCUCCUCCCCGCACCUGCCCAAAGGUCACUGGACAGGCAUUUGUCUGGCCUUCCCUUUUACUGCUGGCUGGGAAGGAGGAGCAUCAGACCACAGAUCCUGGAAGGCACUUCUCUCCCUGACUGCUGCUCACACUGCCGUGAGAACCUGCUUAUAUCCAGGACCAAGGAGGCAAUGCCAGGAAGCUGGUGAAGGGUUUCCUCUCCUCCACCAUGGUUGACAGCACUGAGUAUGAAGUGGCCUCCCAGCCUGAGGUGGAAACCUCCCCUUUGGGUGAUGGGGCCAGCCCAGGGCCGGAGCAGGUGAAGCUGAAGAAGGAGAUCUCACUGCUUAACGGCGUGUGCCUGAUUGUGGGGAACAUGAUCGGCUCGGGCAUCUUUGUUUCCCCCAAGGGUGUGCUCAUAUACAGUGCCUCCUUUGGUCUCUCUCUGGUCAUCUGGGCUGUCGGGGGCCUCUUCUCCGUCUUUGGGGCCCUUUGUUAUGCGGAЖCUGGGCACCACCAUUAAGAAAUCUGGGGCCAGCUAUGCCUAUAUCCUGGAGGCCUUUGGAGGAUUCCUUGCUUUCAUCAGЖCUCUGGACCUCCCUGCUCAUCAUUGAGCCCACCAGCCAGGCCAUCAUUGCCAUCACCUUUGCCAACUACAUGGUACAGCCUCUCUUCCCGAGCUGCUUCGCCCCUUAUGCUGCCAGCCGCCUGCUGGCUGCUGCCUGCAUPUGUCUCUUAACCUUCAUUAЖCUGUGCCUAUGUCAAAUGGGGAACCCUGGUACAAGAUAUUUUCACCUAUGCUAAAGUAUUGGCACUGAUCGCGGUCAUCGUUGCAGGCAUUGUUAGACUUGGCCAGGGAGCCUCUACUCAUUUUGAGAAUUCCUUUGAGGGUUCAUCAUUUGCAGUGGGUGACAUUGCCCUGGCACUGUACUCAGCUCUGUUCUCCUACUCAGGCUGGGACACCCUCAACUAUGUCACUGAAGAGAUCAAGAAUCCUGAGAGGAACCUGCCCCUCUCCAUUGGCAUCUCCAUGCCCAUUGUCACCAUCAUCUAUAUCUUGACCAAUGUGGCCUAUUAUACUGUGCUAGACAUGAGAGACAUCUUGGCCAGUGAUGCUGUUGCUGUGACUUUUGCAGAUCAGAUAUUUGGAAUAUUUAACUGGAUAAUUCCACUGUCAGUUGCAUUAUCCUGUUUUGGUGGCCUCAAUGCCUCCAUUGUGGCUGCUUCUAGGCUUUUCUUUGUGGGCUCAAGAGAAGGCCAUCUCCCUGAUGCCAUCUGCAUGAUCCAUGUUGAGCGGUUCACACCAGUGCCUUCUCUGCUCUUCAAUGGUAUCAUGGCAUUGAUCUACUUGUGCGUGGAAGACAUCUUCCAGCUCAUUAACUACUACAGCUUCAGCUACUGGUUCUUUGUGGGGCUUUCUAUUGUGGGUCAGCUPUAUCUGCGCUGGAAGGAGCCUGAUCGACCUCGUCCCCUCAAGCUCAGCGUUUUCUUCCCGAUUGUCUUCUGCCUCUGCACCAUCUUCCUGGUGGCUGUUCCACUPUACAGUGAUACUAUCAACUCCCUCAUCGGCAUUGCCAUUGCCCUCUCAGGCCUGCCCUUUUACUUCCUCAUCAUCAGAGUGCCAGAACAUAAGCGACCGCUPUACCUCCGAAGGAUCGUGGGGUCUGCCACAAGGUACCUCCAGGUCCUGUGUAUGUCAGUUGCUGCAGAAAUGGAUUUGGAAGAUGGAGGAGAGAUGCCCAAGCAACGGGAUCCCAAAUCUAACUAAЖCACCAUCUGGAAUCCUGAUGUGGAAAGCAGGGGUUUCUGGUCUACUGGCUAGAGCUAAGGAAGUUGAAAAGGAAAGCUCACUUCUUUGGAGGCACCUGUCCAGAAGCCUGGCCUAGGCAGCUUCAACCUUUGAACUUACUUUUUGAAAUGAAAAGUAAUUUAUUUGUUUUGCUACAUACUGUUCCAGACUUUUAAAGGGGACAAUGAAGGUGACUGUGGGGAGGAGCAUGUCAGGUUUGGGCUUGGUUGUUUUAGAAGCACCUGGGUGUGCCUACCUACUCCUCUUUUCUUUUAAAAGGGCCCACAAUGCUCCAAUUUCCUGUCUCCUPUAGAGAGACAUGAAACUAUCACAGGUGCUGGAUGACAAUAAAAGUUUAUGUUCCUAAA
Sequence (SHORT NAMES ENCODING) GUUUUCCUGUUUUCCAUUUCAGUCCCCGUUACCCUCUGCUUUUUCUGCUCCUCAGAGUCAACAGCUGUUGCAGCAUGAGCGAUACGCUUGGUUCUCCUAACUAGCACCUUCCCCUCUCCCCUGACUCAGCUGGUAGCCCCUCCUCCCCGCACCUGCCCAAAGGUCACUGGACAGGCAUUUGUCUGGCCUUCCCUUUUACUGCUGGCUGGGAAGGAGGAGCAUCAGACCACAGAUCCUGGAAGGCACUUCUCUCCCUGACUGCUGCUCACACUGCCGUGAGAACCUGCUUAUAUCCAGGACCAAGGAGGCAAUGCCAGGAAGCUGGUGAAGGGUUUCCUCUCCUCCACCAUGGUUGACAGCACUGAGUAUGAAGUGGCCUCCCAGCCUGAGGUGGAAACCUCCCCUUUGGGUGAUGGGGCCAGCCCAGGGCCGGAGCAGGUGAAGCUGAAGAAGGAGAUCUCACUGCUUAACGGCGUGUGCCUGAUUGUGGGGAACAUGAUCGGCUCGGGCAUCUUUGUUUCCCCCAAGGGUGUGCUCAUAUACAGUGCCUCCUUUGGUCUCUCUCUGGUCAUCUGGGCUGUCGGGGGCCUCUUCUCCGUCUUUGGGGCCCUUUGUUAUGCGGAm6ACUGGGCACCACCAUUAAGAAAUCUGGGGCCAGCUAUGCCUAUAUCCUGGAGGCCUUUGGAGGAUUCCUUGCUUUCAUCAGm6ACUCUGGACCUCCCUGCUCAUCAUUGAGCCCACCAGCCAGGCCAUCAUUGCCAUCACCUUUGCCAACUACAUGGUACAGCCUCUCUUCCCGAGCUGCUUCGCCCCUUAUGCUGCCAGCCGCCUGCUGGCUGCUGCCUGCAUYUGUCUCUUAACCUUCAUUAm6ACUGUGCCUAUGUCAAAUGGGGAACCCUGGUACAAGAUAUUUUCACCUAUGCUAAAGUAUUGGCACUGAUCGCGGUCAUCGUUGCAGGCAUUGUUAGACUUGGCCAGGGAGCCUCUACUCAUUUUGAGAAUUCCUUUGAGGGUUCAUCAUUUGCAGUGGGUGACAUUGCCCUGGCACUGUACUCAGCUCUGUUCUCCUACUCAGGCUGGGACACCCUCAACUAUGUCACUGAAGAGAUCAAGAAUCCUGAGAGGAACCUGCCCCUCUCCAUUGGCAUCUCCAUGCCCAUUGUCACCAUCAUCUAUAUCUUGACCAAUGUGGCCUAUUAUACUGUGCUAGACAUGAGAGACAUCUUGGCCAGUGAUGCUGUUGCUGUGACUUUUGCAGAUCAGAUAUUUGGAAUAUUUAACUGGAUAAUUCCACUGUCAGUUGCAUUAUCCUGUUUUGGUGGCCUCAAUGCCUCCAUUGUGGCUGCUUCUAGGCUUUUCUUUGUGGGCUCAAGAGAAGGCCAUCUCCCUGAUGCCAUCUGCAUGAUCCAUGUUGAGCGGUUCACACCAGUGCCUUCUCUGCUCUUCAAUGGUAUCAUGGCAUUGAUCUACUUGUGCGUGGAAGACAUCUUCCAGCUCAUUAACUACUACAGCUUCAGCUACUGGUUCUUUGUGGGGCUUUCUAUUGUGGGUCAGCUYUAUCUGCGCUGGAAGGAGCCUGAUCGACCUCGUCCCCUCAAGCUCAGCGUUUUCUUCCCGAUUGUCUUCUGCCUCUGCACCAUCUUCCUGGUGGCUGUUCCACUYUACAGUGAUACUAUCAACUCCCUCAUCGGCAUUGCCAUUGCCCUCUCAGGCCUGCCCUUUUACUUCCUCAUCAUCAGAGUGCCAGAACAUAAGCGACCGCUYUACCUCCGAAGGAUCGUGGGGUCUGCCACAAGGUACCUCCAGGUCCUGUGUAUGUCAGUUGCUGCAGAAAUGGAUUUGGAAGAUGGAGGAGAGAUGCCCAAGCAACGGGAUCCCAAAUCUAACUAAm6ACACCAUCUGGAAUCCUGAUGUGGAAAGCAGGGGUUUCUGGUCUACUGGCUAGAGCUAAGGAAGUUGAAAAGGAAAGCUCACUUCUUUGGAGGCACCUGUCCAGAAGCCUGGCCUAGGCAGCUUCAACCUUUGAACUUACUUUUUGAAAUGAAAAGUAAUUUAUUUGUUUUGCUACAUACUGUUCCAGACUUUUAAAGGGGACAAUGAAGGUGACUGUGGGGAGGAGCAUGUCAGGUUUGGGCUUGGUUGUUUUAGAAGCACCUGGGUGUGCCUACCUACUCCUCUUUUCUUUUAAAAGGGCCCACAAUGCUCCAAUUUCCUGUCUCCUYUAGAGAGACAUGAAACUAUCACAGGUGCUGGAUGACAAUAAAAGUUUAUGUUCCUAAA
Sequence (MODOMICS CODE ENCODING) GUUUUCCUGUUUUCCAUUUCAGUCCCCGUUACCCUCUGCUUUUUCUGCUCCUCAGAGUCAACAGCUGUUGCAGCAUGAGCGAUACGCUUGGUUCUCCUAACUAGCACCUUCCCCUCUCCCCUGACUCAGCUGGUAGCCCCUCCUCCCCGCACCUGCCCAAAGGUCACUGGACAGGCAUUUGUCUGGCCUUCCCUUUUACUGCUGGCUGGGAAGGAGGAGCAUCAGACCACAGAUCCUGGAAGGCACUUCUCUCCCUGACUGCUGCUCACACUGCCGUGAGAACCUGCUUAUAUCCAGGACCAAGGAGGCAAUGCCAGGAAGCUGGUGAAGGGUUUCCUCUCCUCCACCAUGGUUGACAGCACUGAGUAUGAAGUGGCCUCCCAGCCUGAGGUGGAAACCUCCCCUUUGGGUGAUGGGGCCAGCCCAGGGCCGGAGCAGGUGAAGCUGAAGAAGGAGAUCUCACUGCUUAACGGCGUGUGCCUGAUUGUGGGGAACAUGAUCGGCUCGGGCAUCUUUGUUUCCCCCAAGGGUGUGCUCAUAUACAGUGCCUCCUUUGGUCUCUCUCUGGUCAUCUGGGCUGUCGGGGGCCUCUUCUCCGUCUUUGGGGCCCUUUGUUAUGCGGA2000000006ACUGGGCACCACCAUUAAGAAAUCUGGGGCCAGCUAUGCCUAUAUCCUGGAGGCCUUUGGAGGAUUCCUUGCUUUCAUCAG2000000006ACUCUGGACCUCCCUGCUCAUCAUUGAGCCCACCAGCCAGGCCAUCAUUGCCAUCACCUUUGCCAACUACAUGGUACAGCCUCUCUUCCCGAGCUGCUUCGCCCCUUAUGCUGCCAGCCGCCUGCUGGCUGCUGCCUGCAU2000000009UUGUCUCUUAACCUUCAUUA2000000006ACUGUGCCUAUGUCAAAUGGGGAACCCUGGUACAAGAUAUUUUCACCUAUGCUAAAGUAUUGGCACUGAUCGCGGUCAUCGUUGCAGGCAUUGUUAGACUUGGCCAGGGAGCCUCUACUCAUUUUGAGAAUUCCUUUGAGGGUUCAUCAUUUGCAGUGGGUGACAUUGCCCUGGCACUGUACUCAGCUCUGUUCUCCUACUCAGGCUGGGACACCCUCAACUAUGUCACUGAAGAGAUCAAGAAUCCUGAGAGGAACCUGCCCCUCUCCAUUGGCAUCUCCAUGCCCAUUGUCACCAUCAUCUAUAUCUUGACCAAUGUGGCCUAUUAUACUGUGCUAGACAUGAGAGACAUCUUGGCCAGUGAUGCUGUUGCUGUGACUUUUGCAGAUCAGAUAUUUGGAAUAUUUAACUGGAUAAUUCCACUGUCAGUUGCAUUAUCCUGUUUUGGUGGCCUCAAUGCCUCCAUUGUGGCUGCUUCUAGGCUUUUCUUUGUGGGCUCAAGAGAAGGCCAUCUCCCUGAUGCCAUCUGCAUGAUCCAUGUUGAGCGGUUCACACCAGUGCCUUCUCUGCUCUUCAAUGGUAUCAUGGCAUUGAUCUACUUGUGCGUGGAAGACAUCUUCCAGCUCAUUAACUACUACAGCUUCAGCUACUGGUUCUUUGUGGGGCUUUCUAUUGUGGGUCAGCU2000000009UUAUCUGCGCUGGAAGGAGCCUGAUCGACCUCGUCCCCUCAAGCUCAGCGUUUUCUUCCCGAUUGUCUUCUGCCUCUGCACCAUCUUCCUGGUGGCUGUUCCACU2000000009UUACAGUGAUACUAUCAACUCCCUCAUCGGCAUUGCCAUUGCCCUCUCAGGCCUGCCCUUUUACUUCCUCAUCAUCAGAGUGCCAGAACAUAAGCGACCGCU2000000009UUACCUCCGAAGGAUCGUGGGGUCUGCCACAAGGUACCUCCAGGUCCUGUGUAUGUCAGUUGCUGCAGAAAUGGAUUUGGAAGAUGGAGGAGAGAUGCCCAAGCAACGGGAUCCCAAAUCUAACUAA2000000006ACACCAUCUGGAAUCCUGAUGUGGAAAGCAGGGGUUUCUGGUCUACUGGCUAGAGCUAAGGAAGUUGAAAAGGAAAGCUCACUUCUUUGGAGGCACCUGUCCAGAAGCCUGGCCUAGGCAGCUUCAACCUUUGAACUUACUUUUUGAAAUGAAAAGUAAUUUAUUUGUUUUGCUACAUACUGUUCCAGACUUUUAAAGGGGACAAUGAAGGUGACUGUGGGGAGGAGCAUGUCAGGUUUGGGCUUGGUUGUUUUAGAAGCACCUGGGUGUGCCUACCUACUCCUCUUUUCUUUUAAAAGGGCCCACAAUGCUCCAAUUUCCUGUCUCCU2000000009UUAGAGAGACAUGAAACUAUCACAGGUGCUGGAUGACAAUAAAAGUUUAUGUUCCUAAA

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 624 705 846 866 1551 1656 1758 1885 2214
Modification Positions m6A m6A Y m6A Y Y Y m6A Y
Genomic Coordinates 14:22813123:- 14:22813042:- 14:22812901:- 14:22780033:- 14:22774396:- 14:22774054:- 14:22773952:- 14:22773609:- 14:22773280:-
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs KTLz8piFYdwC
WiQcrNTGZHPT
bXBqJigD9oV3
f6YSioLdAWpr
5Nnepx5V7yHo
aHkqKEJkRYyb
KTLz8piFYdwC
WiQcrNTGZHPT
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr
bXBqJigD9oV3
f6YSioLdAWpr