General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000592186
Gene ID:	ENSG00000141646
Gene Name:	SMAD4
Sequence (UNICHARACTER ENCODING)	AUGGЖCAAUAUGUCUAUUACGAAUACACCAACAAGUAAUGAUGCCUGUCUGAGCAUUGUGCAUAGUUUGAUGUGCCAUAGACAAGGUGGAGAGAGUGAAACAUUUGCAAAAAGAGCAAUUGAAAGUUUGGUAAAGAAGCUGAAGGAGAAAAAAGAUGAAUUGGAUUCUPUAAUAACAGCUAUAACUACAAAUGGAGCUCAPCCUAGUAAAUGUGUUACCAUACAGAGAACAUUGGAUGGGAGGCUUCAGGUGGCUGGUCGGAAAGGAUUUCCUCAUGUGAUCUAUGCCCGUCUCUGGAGGUGGCCUGAUCUUCACAAAAAUGAACUAAAACAUGUUAAAUAUUGUCAGUAUGCGUUUGACUUAAAAUGUGAUAGUGUCUGUGUGAAUCCAUAUCACUACGAACGAGUUGUAUCACCUGGAAUUGAUCUCUCAGGAUUAACACUGCAGAGUAAUGCUCCAUCAAGUAUGAUGGUGAAGGAUGAAUAUGUGCAUGACUUUGAGGGACAGCCAUCGUUGUCCACUGAAGGACAUUCAAUUCAAACCAUCCAGCAUCCACCAAGUAAUCGUGCAUCGACAGAGACAUACAGCACCCCAGCUCUGUUAGCCCCAUCUGAGUCUAAUGCUACCAGCACUGCCAACUUUCCCAACAUUCCUGUGGCUUCCACAAGUCAGCCUGCCAGUAUACUGGGGGGCAGCCAUAGUGAAGGACUGUUGCAGAUAGCAUCAGGGCCUCAGCCAGGACAGCAGCAGAAUGGAUUUACUGGUCAGCCAGCUACUUACCAUCAUAACAGCACUACCACCUGGACUGGAAGUAGGACUGCACCAUACACACCUAAUUUGCCUCACCACCAAAACGGCCAUCUUCAGCACCACCCGCCUAUGCCGCCCCAPCCCGGACAUUACUGGCCUGUUCACAAUGAGCUUGCAUUCCAGCCUCCCAUUUCCAAUCAPCCUGGUCUUUGAUUUGCGUCAGUGUCAUCGACAGAUGCAGCAGCAGGCGGCUACUGCACAAGCUGCAGCAGCUGCCCAGGCAGCAGCCGUGGCAGGAAACAUCCCUGGCCCAGGAUCAGUAGGUGGAAUAGCUCCAGCUAUCAGUCUGUCAGCUGCUGCUGGAAUUGGUGUUGAUGACCUUCGUCGCUUAUGCAUACUCAGGAUGAGUUUUGUGAAAGGCUGGGGACCGGAUUACCCAAGACAGAGCAUCAAAGAAACACCUUGCUGGAUUGAAAUUCACUUACACCGGGCCCUCCAGCUCCUAGACGAAGUACUUCAUACCAUGCCGAUUGCAGЖCCCACAACCUPUAGЖCUGA
Sequence (SHORT NAMES ENCODING)	AUGGm6ACAAUAUGUCUAUUACGAAUACACCAACAAGUAAUGAUGCCUGUCUGAGCAUUGUGCAUAGUUUGAUGUGCCAUAGACAAGGUGGAGAGAGUGAAACAUUUGCAAAAAGAGCAAUUGAAAGUUUGGUAAAGAAGCUGAAGGAGAAAAAAGAUGAAUUGGAUUCUYUAAUAACAGCUAUAACUACAAAUGGAGCUCAYCCUAGUAAAUGUGUUACCAUACAGAGAACAUUGGAUGGGAGGCUUCAGGUGGCUGGUCGGAAAGGAUUUCCUCAUGUGAUCUAUGCCCGUCUCUGGAGGUGGCCUGAUCUUCACAAAAAUGAACUAAAACAUGUUAAAUAUUGUCAGUAUGCGUUUGACUUAAAAUGUGAUAGUGUCUGUGUGAAUCCAUAUCACUACGAACGAGUUGUAUCACCUGGAAUUGAUCUCUCAGGAUUAACACUGCAGAGUAAUGCUCCAUCAAGUAUGAUGGUGAAGGAUGAAUAUGUGCAUGACUUUGAGGGACAGCCAUCGUUGUCCACUGAAGGACAUUCAAUUCAAACCAUCCAGCAUCCACCAAGUAAUCGUGCAUCGACAGAGACAUACAGCACCCCAGCUCUGUUAGCCCCAUCUGAGUCUAAUGCUACCAGCACUGCCAACUUUCCCAACAUUCCUGUGGCUUCCACAAGUCAGCCUGCCAGUAUACUGGGGGGCAGCCAUAGUGAAGGACUGUUGCAGAUAGCAUCAGGGCCUCAGCCAGGACAGCAGCAGAAUGGAUUUACUGGUCAGCCAGCUACUUACCAUCAUAACAGCACUACCACCUGGACUGGAAGUAGGACUGCACCAUACACACCUAAUUUGCCUCACCACCAAAACGGCCAUCUUCAGCACCACCCGCCUAUGCCGCCCCAYCCCGGACAUUACUGGCCUGUUCACAAUGAGCUUGCAUUCCAGCCUCCCAUUUCCAAUCAYCCUGGUCUUUGAUUUGCGUCAGUGUCAUCGACAGAUGCAGCAGCAGGCGGCUACUGCACAAGCUGCAGCAGCUGCCCAGGCAGCAGCCGUGGCAGGAAACAUCCCUGGCCCAGGAUCAGUAGGUGGAAUAGCUCCAGCUAUCAGUCUGUCAGCUGCUGCUGGAAUUGGUGUUGAUGACCUUCGUCGCUUAUGCAUACUCAGGAUGAGUUUUGUGAAAGGCUGGGGACCGGAUUACCCAAGACAGAGCAUCAAAGAAACACCUUGCUGGAUUGAAAUUCACUUACACCGGGCCCUCCAGCUCCUAGACGAAGUACUUCAUACCAUGCCGAUUGCAGm6ACCCACAACCUYUAGm6ACUGA
Sequence (MODOMICS CODE ENCODING)	AUGG2000000006ACAAUAUGUCUAUUACGAAUACACCAACAAGUAAUGAUGCCUGUCUGAGCAUUGUGCAUAGUUUGAUGUGCCAUAGACAAGGUGGAGAGAGUGAAACAUUUGCAAAAAGAGCAAUUGAAAGUUUGGUAAAGAAGCUGAAGGAGAAAAAAGAUGAAUUGGAUUCU2000000009UUAAUAACAGCUAUAACUACAAAUGGAGCUCA2000000009UCCUAGUAAAUGUGUUACCAUACAGAGAACAUUGGAUGGGAGGCUUCAGGUGGCUGGUCGGAAAGGAUUUCCUCAUGUGAUCUAUGCCCGUCUCUGGAGGUGGCCUGAUCUUCACAAAAAUGAACUAAAACAUGUUAAAUAUUGUCAGUAUGCGUUUGACUUAAAAUGUGAUAGUGUCUGUGUGAAUCCAUAUCACUACGAACGAGUUGUAUCACCUGGAAUUGAUCUCUCAGGAUUAACACUGCAGAGUAAUGCUCCAUCAAGUAUGAUGGUGAAGGAUGAAUAUGUGCAUGACUUUGAGGGACAGCCAUCGUUGUCCACUGAAGGACAUUCAAUUCAAACCAUCCAGCAUCCACCAAGUAAUCGUGCAUCGACAGAGACAUACAGCACCCCAGCUCUGUUAGCCCCAUCUGAGUCUAAUGCUACCAGCACUGCCAACUUUCCCAACAUUCCUGUGGCUUCCACAAGUCAGCCUGCCAGUAUACUGGGGGGCAGCCAUAGUGAAGGACUGUUGCAGAUAGCAUCAGGGCCUCAGCCAGGACAGCAGCAGAAUGGAUUUACUGGUCAGCCAGCUACUUACCAUCAUAACAGCACUACCACCUGGACUGGAAGUAGGACUGCACCAUACACACCUAAUUUGCCUCACCACCAAAACGGCCAUCUUCAGCACCACCCGCCUAUGCCGCCCCA2000000009UCCCGGACAUUACUGGCCUGUUCACAAUGAGCUUGCAUUCCAGCCUCCCAUUUCCAAUCA2000000009UCCUGGUCUUUGAUUUGCGUCAGUGUCAUCGACAGAUGCAGCAGCAGGCGGCUACUGCACAAGCUGCAGCAGCUGCCCAGGCAGCAGCCGUGGCAGGAAACAUCCCUGGCCCAGGAUCAGUAGGUGGAAUAGCUCCAGCUAUCAGUCUGUCAGCUGCUGCUGGAAUUGGUGUUGAUGACCUUCGUCGCUUAUGCAUACUCAGGAUGAGUUUUGUGAAAGGCUGGGGACCGGAUUACCCAAGACAGAGCAUCAAAGAAACACCUUGCUGGAUUGAAAUUCACUUACACCGGGCCCUCCAGCUCCUAGACGAAGUACUUCAUACCAUGCCGAUUGCAG2000000006ACCCACAACCU2000000009UUAG2000000006ACUGA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	5	169	201	891	951	1287	1298	1302
Modification Positions	m6A	Y	Y	Y	Y	m6A	Y	m6A
Genomic Coordinates	18:51047051:+	18:51047215:+	18:51047247:+	18:51058443:+	18:51059912:+	18:51078448:+	18:51078459:+	18:51078463:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	msuJfBpJvM5H VyCX26p5UBRL 8cMbzB4aD5Se 93arJtwJmuS9 BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se 93arJtwJmuS9 ArijeGVTwYBw BkoLW2CBToyL nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP Yfn77uLS5tv8