Modomics - A Database of RNA Modifications

General Data

RNA Type mRNA
Original Source Sci-ModoM
Transcript ID: ENST00000308080
Gene ID: ENSG00000132205
Gene Name: EMILIN2
Sequence (UNICHARACTER ENCODING) CCGGGAGACGCACGCCAGGAGCUUCCUCCGUUGGAAGUCCCUUCCGCUGGCGACGUGGGCGCUGUGGCCGCGGCCCUCGUGGAGCCUGAGCCCUCCUCACGGCCUCCGCGCAGCCCUGGGGCCCCCCGGCAGGGUCCCUCGGCAGCCCGCGGGAGAGGCCGUGGGGCCCCGGCAGGAGUGUGGUUCAGAGACGGUGCGGGGGUCGGUGGCCUCAGGUCCCUUUCAGUCACUUGCGACGCACCCGCGGUUUCCGCGUGCUGUGAAAUCGGGAAUUGUUGAUGCCGGAGCCAAGAGUGAGGCCGGUUUGGAAAGCGCAGGCGUGUCUGGGCGGGGUCUGCCGCGGGGCGUGGACGGCCAGACCGGGAGCGGCACCGUCCCCGGCGCAGAAGGCUUCGCGGGCGCACCAGGAUACCCGAAGUCACCUCCUGUAGCUUCCCCAGGAGCUCCGGUGCCUUCUCUGGUGUCUUUUUCUGCGGGGCUCACCCAGAAGCCUUUCCCCAGUGAUGGGGGCGUUGUCCUCUUUAACAAAGUGCUGGUGAACGACGGGGAUGUUUACAACCCCAGCACCGGGGUCUUCACGGCUCCUUAUGAUGGGCGCUACCUGAUCACGGCCACCCUCACCCCCGAGAGAGACGCCUACGUGGAAGCAGUGCUGUCGGUCUCCAACGCCAGCGUGGCCCAGCUGCAUACCGCUGGGUACAGGAGAGAGUUCCUGGAAUACCACCGCCCUCCAGGAGCUUUGCAUACCUGCGGGGGCCCGGGGGCAUUCCACCUCAUCGUGCACCUGAAGGCGGGAGAUGCAGUCAACGUCGUGGUGЖCUGGGGGCAAGCUGGCUCACACAGЖCUUUGAUGAAAUGUACUCCACAUUUAGUGGGGUUUUCUUAUAUCCUUUCCUUUCCCACCUCUAAGGUGGCUGGGGAGAUGUCAGGGGAAAGAUAGAUAGUUGUAAAAЖCUCUAAAGCUPUAAUAUAUUCGGUUUGUAUGUAAUGGAAGCACGGGGCUAGAGUUUCCACAUAGGCCCCAACAUAAAGGCCUUCCCUCGCUGUUGAGGCCACCAUGCCUUACUGCAPCCAGCCAGGCUGCAGGGAGUGAGGCACACGGUGAACAUGGCCACUGЖCUUUUCUGCCACUCUAЖCUGGЖCAACUGGAAGACUUGGAAAGGCCUCCACCUGUAUCUACACUCUGAGGGCCCUGGЖCUGGGCCUGAGCUUGCCACAGAGGCUCCGUCUGЖCUGUGGGCUGGGAGGAGGGAGGCAGGGGAGAGCCGGUCACGGUGGCUGGUCUPUACUGCAGGGCAGCACUGUGGCCAGCUGUCUGUCUUUACACUGCAUGCAGAAGUUUAAЖCACUGAAGUGCCGAAGUGGCCCGUGCCGCCGCACAGAGACCCCGACUPUAGUUUGGGCUGUUCCACGCUUGGCUCACCAUUGCCGCCUGGGЖCUUAACCUGCUCAGGCGGGCCUUCGCCCAGCUGCAAAUAGGGAUGCGUUAGAGЖCUGUUCCCAAAGCUUGUUGGGCUCCUUAAAUGGCAUGUACAAUUUAAGUGCAAAGACAGG
Sequence (SHORT NAMES ENCODING) CCGGGAGACGCACGCCAGGAGCUUCCUCCGUUGGAAGUCCCUUCCGCUGGCGACGUGGGCGCUGUGGCCGCGGCCCUCGUGGAGCCUGAGCCCUCCUCACGGCCUCCGCGCAGCCCUGGGGCCCCCCGGCAGGGUCCCUCGGCAGCCCGCGGGAGAGGCCGUGGGGCCCCGGCAGGAGUGUGGUUCAGAGACGGUGCGGGGGUCGGUGGCCUCAGGUCCCUUUCAGUCACUUGCGACGCACCCGCGGUUUCCGCGUGCUGUGAAAUCGGGAAUUGUUGAUGCCGGAGCCAAGAGUGAGGCCGGUUUGGAAAGCGCAGGCGUGUCUGGGCGGGGUCUGCCGCGGGGCGUGGACGGCCAGACCGGGAGCGGCACCGUCCCCGGCGCAGAAGGCUUCGCGGGCGCACCAGGAUACCCGAAGUCACCUCCUGUAGCUUCCCCAGGAGCUCCGGUGCCUUCUCUGGUGUCUUUUUCUGCGGGGCUCACCCAGAAGCCUUUCCCCAGUGAUGGGGGCGUUGUCCUCUUUAACAAAGUGCUGGUGAACGACGGGGAUGUUUACAACCCCAGCACCGGGGUCUUCACGGCUCCUUAUGAUGGGCGCUACCUGAUCACGGCCACCCUCACCCCCGAGAGAGACGCCUACGUGGAAGCAGUGCUGUCGGUCUCCAACGCCAGCGUGGCCCAGCUGCAUACCGCUGGGUACAGGAGAGAGUUCCUGGAAUACCACCGCCCUCCAGGAGCUUUGCAUACCUGCGGGGGCCCGGGGGCAUUCCACCUCAUCGUGCACCUGAAGGCGGGAGAUGCAGUCAACGUCGUGGUGm6ACUGGGGGCAAGCUGGCUCACACAGm6ACUUUGAUGAAAUGUACUCCACAUUUAGUGGGGUUUUCUUAUAUCCUUUCCUUUCCCACCUCUAAGGUGGCUGGGGAGAUGUCAGGGGAAAGAUAGAUAGUUGUAAAAm6ACUCUAAAGCUYUAAUAUAUUCGGUUUGUAUGUAAUGGAAGCACGGGGCUAGAGUUUCCACAUAGGCCCCAACAUAAAGGCCUUCCCUCGCUGUUGAGGCCACCAUGCCUUACUGCAYCCAGCCAGGCUGCAGGGAGUGAGGCACACGGUGAACAUGGCCACUGm6ACUUUUCUGCCACUCUAm6ACUGGm6ACAACUGGAAGACUUGGAAAGGCCUCCACCUGUAUCUACACUCUGAGGGCCCUGGm6ACUGGGCCUGAGCUUGCCACAGAGGCUCCGUCUGm6ACUGUGGGCUGGGAGGAGGGAGGCAGGGGAGAGCCGGUCACGGUGGCUGGUCUYUACUGCAGGGCAGCACUGUGGCCAGCUGUCUGUCUUUACACUGCAUGCAGAAGUUUAAm6ACACUGAAGUGCCGAAGUGGCCCGUGCCGCCGCACAGAGACCCCGACUYUAGUUUGGGCUGUUCCACGCUUGGCUCACCAUUGCCGCCUGGGm6ACUUAACCUGCUCAGGCGGGCCUUCGCCCAGCUGCAAAUAGGGAUGCGUUAGAGm6ACUGUUCCCAAAGCUUGUUGGGCUCCUUAAAUGGCAUGUACAAUUUAAGUGCAAAGACAGG
Sequence (MODOMICS CODE ENCODING) CCGGGAGACGCACGCCAGGAGCUUCCUCCGUUGGAAGUCCCUUCCGCUGGCGACGUGGGCGCUGUGGCCGCGGCCCUCGUGGAGCCUGAGCCCUCCUCACGGCCUCCGCGCAGCCCUGGGGCCCCCCGGCAGGGUCCCUCGGCAGCCCGCGGGAGAGGCCGUGGGGCCCCGGCAGGAGUGUGGUUCAGAGACGGUGCGGGGGUCGGUGGCCUCAGGUCCCUUUCAGUCACUUGCGACGCACCCGCGGUUUCCGCGUGCUGUGAAAUCGGGAAUUGUUGAUGCCGGAGCCAAGAGUGAGGCCGGUUUGGAAAGCGCAGGCGUGUCUGGGCGGGGUCUGCCGCGGGGCGUGGACGGCCAGACCGGGAGCGGCACCGUCCCCGGCGCAGAAGGCUUCGCGGGCGCACCAGGAUACCCGAAGUCACCUCCUGUAGCUUCCCCAGGAGCUCCGGUGCCUUCUCUGGUGUCUUUUUCUGCGGGGCUCACCCAGAAGCCUUUCCCCAGUGAUGGGGGCGUUGUCCUCUUUAACAAAGUGCUGGUGAACGACGGGGAUGUUUACAACCCCAGCACCGGGGUCUUCACGGCUCCUUAUGAUGGGCGCUACCUGAUCACGGCCACCCUCACCCCCGAGAGAGACGCCUACGUGGAAGCAGUGCUGUCGGUCUCCAACGCCAGCGUGGCCCAGCUGCAUACCGCUGGGUACAGGAGAGAGUUCCUGGAAUACCACCGCCCUCCAGGAGCUUUGCAUACCUGCGGGGGCCCGGGGGCAUUCCACCUCAUCGUGCACCUGAAGGCGGGAGAUGCAGUCAACGUCGUGGUG2000000006ACUGGGGGCAAGCUGGCUCACACAG2000000006ACUUUGAUGAAAUGUACUCCACAUUUAGUGGGGUUUUCUUAUAUCCUUUCCUUUCCCACCUCUAAGGUGGCUGGGGAGAUGUCAGGGGAAAGAUAGAUAGUUGUAAAA2000000006ACUCUAAAGCU2000000009UUAAUAUAUUCGGUUUGUAUGUAAUGGAAGCACGGGGCUAGAGUUUCCACAUAGGCCCCAACAUAAAGGCCUUCCCUCGCUGUUGAGGCCACCAUGCCUUACUGCA2000000009UCCAGCCAGGCUGCAGGGAGUGAGGCACACGGUGAACAUGGCCACUG2000000006ACUUUUCUGCCACUCUA2000000006ACUGG2000000006ACAACUGGAAGACUUGGAAAGGCCUCCACCUGUAUCUACACUCUGAGGGCCCUGG2000000006ACUGGGCCUGAGCUUGCCACAGAGGCUCCGUCUG2000000006ACUGUGGGCUGGGAGGAGGGAGGCAGGGGAGAGCCGGUCACGGUGGCUGGUCU2000000009UUACUGCAGGGCAGCACUGUGGCCAGCUGUCUGUCUUUACACUGCAUGCAGAAGUUUAA2000000006ACACUGAAGUGCCGAAGUGGCCCGUGCCGCCGCACAGAGACCCCGACU2000000009UUAGUUUGGGCUGUUCCACGCUUGGCUCACCAUUGCCGCCUGGG2000000006ACUUAACCUGCUCAGGCGGGCCUUCGCCCAGCUGCAAAUAGGGAUGCGUUAGAG2000000006ACUGUUCCCAAAGCUUGUUGGGCUCCUUAAAUGGCAUGUACAAUUUAAGUGCAAAGACAGG

Score Table

Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.
Method Classification Score
Multiple direct experimental evidence 1
Direct experimental evidence 2
Inferred based on indirect experimental evidence 3
Predicted computationally 4
Evidence not yet annotated (Unknown) 5
Irrelevant 6

Modification Positions

Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.

Position in the Sequence 818 843 951 962 1068 1115 1132 1137 1192 1226 1279 1338 1386 1430 1484
Modification Positions m6A m6A m6A Y Y m6A m6A m6A m6A m6A Y m6A Y m6A m6A
Genomic Coordinates 18:2913315:+ 18:2913340:+ 18:2913448:+ 18:2913459:+ 18:2913565:+ 18:2913612:+ 18:2913629:+ 18:2913634:+ 18:2913689:+ 18:2913723:+ 18:2913776:+ 18:2913835:+ 18:2913883:+ 18:2913927:+ 18:2913981:+
Level of Experimental Evidence 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Level of Experimental Reliability 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
Source Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM Sci-ModoM
EUFIDs Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
BtsJQJ3DteUq
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
BtsJQJ3DteUq
Yfn77uLS5tv8
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
gBgcfFQ5WN9C
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
BtsJQJ3DteUq
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
Mg9GixDBFQAT
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
KTLz8piFYdwC
WiQcrNTGZHPT
BtsJQJ3DteUq
iezFbUdmY3A6
S9vNeQQYrhac
Yfn77uLS5tv8
5Nnepx5V7yHo
aHkqKEJkRYyb
msuJfBpJvM5H
VyCX26p5UBRL
8cMbzB4aD5Se
ArijeGVTwYBw
BkoLW2CBToyL
KTLz8piFYdwC
WiQcrNTGZHPT
Lny8GcCeVGc9
Yfn77uLS5tv8