General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000299543
Gene ID:	ENSG00000060069
Gene Name:	CTDP1
Sequence (UNICHARACTER ENCODING)	GCAGCAGUGAGUCCGAGGGCACGAAGUCCUCCUCCUCCGCCUCUGAUGGCGAAAGCGAGGGGAAAAGAGGCCGGCAGAAGCCGAAGGCUGCCCCAGAGGGAGCCGGGGCGCUGGCACAGGGCAGUUCCCUGGAGCCGGGGCGGCCUGCAGCACCGAGUCUCCCCGGAGAGGCCGAGCCUGGCGCGCAUGCCCCGGЖCAAGGAGCCUGAGCUGGGUGGGCAGGAGGAGGGCGAGCGGGAUGGCCUCUGCGGCCUGGGCAACGGCUGUGCCGACAGGAAGGAGGCGGAGACCGAGUCACAGAACAGCGAGCUGUCGGGGGUCACUGCGGGUGAGUCCCUGGACCAGAGCAUGGAGGAGGAGGAGGAGGAGGACACGGAUGAGGAUGACCACCUCAUCUACCUGGAGGAGAUCCUGGUCCGUGUACACACUGACUACUAUGCCAAGUAUGACCGCUACCUCAACAAGGAGAUCGAGGAGGCGCCGGACAUCCGCAAGAUCGUGCCGGAGCUCAAGAGCAAGGUGCUGGCAGACGUGGCCAUAAUUUUCAGUGGGCUACACCCGACAAACUUCCCGAUAGAGAAGACGCGGGAGCAUUACCACGCCACGGCGCUGGGAGCGAAGAUCCUCACUCGGCUGGUGCUGAGCCCCGACGCCCCUGACAGGGCCACGCACCUGAUCGCCGCGCGAGCUGGCACAGAGAAGGUGCUGCAGGCACAGGAGUGCGGACACCUGCACGUGGUCAACCCUGACUGGCUGUGGAGCUGCCUGGAGCGCUGGGACAAGGUGGAGGAGCAGCUCUUCCCGCUCAGGGACGAUCACACCAAGGCACAGAGGGAGAACAGCCCUGCGGCCUUUCCCGACCGGGAGGGUGUGCCCCCCACCGCCUUGUUCCACCCGAUGCCGGUUCUUCCCAAGGCCCAGCCUGGCCCCGAGGUUCGGAUCUACGACUCCAACACGGGGAAGCUCAUCAGGACGGGCGCCCGGGGGCCCCCAGCACCCUCCAGCUCCCUACCCAUCCGCCAGGAGCCCUCUUCCUUCAGAGGCCACAAGAGGAAGCUGAAUGAAGAGGACGCCGCCAGCGAGUCCAGCAGGGAGUCCAGCAACGAGGAUGAGGGCAGCAGCUCCGAGGCCGACGAGAUGGCCAAGGCGCUGGAGGCGGAGCUCAACGACCUCAUGUGAGCGCGGGCAGCGGGCAGGGЖCUGAAGCCUGACCGACCUCCAGCAGCACUCGGACGUCCCCGGACCAGCCCUCAGUCUCGGUCCACGCUGCUUUCUUCCCAAAGGЖCAUGUAUAUUUGCAGAGCUCCACAUACAGAAACACAUUAUUUUGCAGAAAUAGGUGUUUUUAAGAAGUUUUACUACAGGAAUGUCUACUUUUGUAAGUGACAGGUGUUAAAGGCCCAGGUGUGCUGUGCCAAAGAGCUCAGCAGAGGCUCACGUGGCCCAGGCUGGUGCGCCCGCUGUCUCGGUAAGGGGCGGGUUGGUGUGUUUUCCCCUUGUGUACCAGAGCACAUUCCUUAGGGGACGGCUUUGGGGGUCCCACGAGACAUGGЖCUAGGAGUUUAAGCAGGЖCAGUGUGCGUGCACGAGCUCCGAGCCCAGCACAGACAUGCCUGGAACCCCCGCCGCCUGCUGCUCCCUCCUAGGGAACCCAUUUCCGGGGAACGCCGUGЖCUGUCGGGCAGCCUGGAGCUUCCUGCAGCCUCCUACGCAGGGUCCACGCCACGUGGCCUGGGCUGCCAPCCUGCCGUCCUCCCACUGGCAPCCUGGCAAGGGGGCGUUGCUUUUCCUGGGCGGCCUUUUAUGUCUUGGAGACACCUGAUGUAAAGUUUCUGUAAAUCUAUUUCAUAUCUGACCCACCAAACAGAUUUCUCUPUAAUAAAAAUCCUUUUU
Sequence (SHORT NAMES ENCODING)	GCAGCAGUGAGUCCGAGGGCACGAAGUCCUCCUCCUCCGCCUCUGAUGGCGAAAGCGAGGGGAAAAGAGGCCGGCAGAAGCCGAAGGCUGCCCCAGAGGGAGCCGGGGCGCUGGCACAGGGCAGUUCCCUGGAGCCGGGGCGGCCUGCAGCACCGAGUCUCCCCGGAGAGGCCGAGCCUGGCGCGCAUGCCCCGGm6ACAAGGAGCCUGAGCUGGGUGGGCAGGAGGAGGGCGAGCGGGAUGGCCUCUGCGGCCUGGGCAACGGCUGUGCCGACAGGAAGGAGGCGGAGACCGAGUCACAGAACAGCGAGCUGUCGGGGGUCACUGCGGGUGAGUCCCUGGACCAGAGCAUGGAGGAGGAGGAGGAGGAGGACACGGAUGAGGAUGACCACCUCAUCUACCUGGAGGAGAUCCUGGUCCGUGUACACACUGACUACUAUGCCAAGUAUGACCGCUACCUCAACAAGGAGAUCGAGGAGGCGCCGGACAUCCGCAAGAUCGUGCCGGAGCUCAAGAGCAAGGUGCUGGCAGACGUGGCCAUAAUUUUCAGUGGGCUACACCCGACAAACUUCCCGAUAGAGAAGACGCGGGAGCAUUACCACGCCACGGCGCUGGGAGCGAAGAUCCUCACUCGGCUGGUGCUGAGCCCCGACGCCCCUGACAGGGCCACGCACCUGAUCGCCGCGCGAGCUGGCACAGAGAAGGUGCUGCAGGCACAGGAGUGCGGACACCUGCACGUGGUCAACCCUGACUGGCUGUGGAGCUGCCUGGAGCGCUGGGACAAGGUGGAGGAGCAGCUCUUCCCGCUCAGGGACGAUCACACCAAGGCACAGAGGGAGAACAGCCCUGCGGCCUUUCCCGACCGGGAGGGUGUGCCCCCCACCGCCUUGUUCCACCCGAUGCCGGUUCUUCCCAAGGCCCAGCCUGGCCCCGAGGUUCGGAUCUACGACUCCAACACGGGGAAGCUCAUCAGGACGGGCGCCCGGGGGCCCCCAGCACCCUCCAGCUCCCUACCCAUCCGCCAGGAGCCCUCUUCCUUCAGAGGCCACAAGAGGAAGCUGAAUGAAGAGGACGCCGCCAGCGAGUCCAGCAGGGAGUCCAGCAACGAGGAUGAGGGCAGCAGCUCCGAGGCCGACGAGAUGGCCAAGGCGCUGGAGGCGGAGCUCAACGACCUCAUGUGAGCGCGGGCAGCGGGCAGGGm6ACUGAAGCCUGACCGACCUCCAGCAGCACUCGGACGUCCCCGGACCAGCCCUCAGUCUCGGUCCACGCUGCUUUCUUCCCAAAGGm6ACAUGUAUAUUUGCAGAGCUCCACAUACAGAAACACAUUAUUUUGCAGAAAUAGGUGUUUUUAAGAAGUUUUACUACAGGAAUGUCUACUUUUGUAAGUGACAGGUGUUAAAGGCCCAGGUGUGCUGUGCCAAAGAGCUCAGCAGAGGCUCACGUGGCCCAGGCUGGUGCGCCCGCUGUCUCGGUAAGGGGCGGGUUGGUGUGUUUUCCCCUUGUGUACCAGAGCACAUUCCUUAGGGGACGGCUUUGGGGGUCCCACGAGACAUGGm6ACUAGGAGUUUAAGCAGGm6ACAGUGUGCGUGCACGAGCUCCGAGCCCAGCACAGACAUGCCUGGAACCCCCGCCGCCUGCUGCUCCCUCCUAGGGAACCCAUUUCCGGGGAACGCCGUGm6ACUGUCGGGCAGCCUGGAGCUUCCUGCAGCCUCCUACGCAGGGUCCACGCCACGUGGCCUGGGCUGCCAYCCUGCCGUCCUCCCACUGGCAYCCUGGCAAGGGGGCGUUGCUUUUCCUGGGCGGCCUUUUAUGUCUUGGAGACACCUGAUGUAAAGUUUCUGUAAAUCUAUUUCAUAUCUGACCCACCAAACAGAUUUCUCUYUAAUAAAAAUCCUUUUU
Sequence (MODOMICS CODE ENCODING)	GCAGCAGUGAGUCCGAGGGCACGAAGUCCUCCUCCUCCGCCUCUGAUGGCGAAAGCGAGGGGAAAAGAGGCCGGCAGAAGCCGAAGGCUGCCCCAGAGGGAGCCGGGGCGCUGGCACAGGGCAGUUCCCUGGAGCCGGGGCGGCCUGCAGCACCGAGUCUCCCCGGAGAGGCCGAGCCUGGCGCGCAUGCCCCGG2000000006ACAAGGAGCCUGAGCUGGGUGGGCAGGAGGAGGGCGAGCGGGAUGGCCUCUGCGGCCUGGGCAACGGCUGUGCCGACAGGAAGGAGGCGGAGACCGAGUCACAGAACAGCGAGCUGUCGGGGGUCACUGCGGGUGAGUCCCUGGACCAGAGCAUGGAGGAGGAGGAGGAGGAGGACACGGAUGAGGAUGACCACCUCAUCUACCUGGAGGAGAUCCUGGUCCGUGUACACACUGACUACUAUGCCAAGUAUGACCGCUACCUCAACAAGGAGAUCGAGGAGGCGCCGGACAUCCGCAAGAUCGUGCCGGAGCUCAAGAGCAAGGUGCUGGCAGACGUGGCCAUAAUUUUCAGUGGGCUACACCCGACAAACUUCCCGAUAGAGAAGACGCGGGAGCAUUACCACGCCACGGCGCUGGGAGCGAAGAUCCUCACUCGGCUGGUGCUGAGCCCCGACGCCCCUGACAGGGCCACGCACCUGAUCGCCGCGCGAGCUGGCACAGAGAAGGUGCUGCAGGCACAGGAGUGCGGACACCUGCACGUGGUCAACCCUGACUGGCUGUGGAGCUGCCUGGAGCGCUGGGACAAGGUGGAGGAGCAGCUCUUCCCGCUCAGGGACGAUCACACCAAGGCACAGAGGGAGAACAGCCCUGCGGCCUUUCCCGACCGGGAGGGUGUGCCCCCCACCGCCUUGUUCCACCCGAUGCCGGUUCUUCCCAAGGCCCAGCCUGGCCCCGAGGUUCGGAUCUACGACUCCAACACGGGGAAGCUCAUCAGGACGGGCGCCCGGGGGCCCCCAGCACCCUCCAGCUCCCUACCCAUCCGCCAGGAGCCCUCUUCCUUCAGAGGCCACAAGAGGAAGCUGAAUGAAGAGGACGCCGCCAGCGAGUCCAGCAGGGAGUCCAGCAACGAGGAUGAGGGCAGCAGCUCCGAGGCCGACGAGAUGGCCAAGGCGCUGGAGGCGGAGCUCAACGACCUCAUGUGAGCGCGGGCAGCGGGCAGGG2000000006ACUGAAGCCUGACCGACCUCCAGCAGCACUCGGACGUCCCCGGACCAGCCCUCAGUCUCGGUCCACGCUGCUUUCUUCCCAAAGG2000000006ACAUGUAUAUUUGCAGAGCUCCACAUACAGAAACACAUUAUUUUGCAGAAAUAGGUGUUUUUAAGAAGUUUUACUACAGGAAUGUCUACUUUUGUAAGUGACAGGUGUUAAAGGCCCAGGUGUGCUGUGCCAAAGAGCUCAGCAGAGGCUCACGUGGCCCAGGCUGGUGCGCCCGCUGUCUCGGUAAGGGGCGGGUUGGUGUGUUUUCCCCUUGUGUACCAGAGCACAUUCCUUAGGGGACGGCUUUGGGGGUCCCACGAGACAUGG2000000006ACUAGGAGUUUAAGCAGG2000000006ACAGUGUGCGUGCACGAGCUCCGAGCCCAGCACAGACAUGCCUGGAACCCCCGCCGCCUGCUGCUCCCUCCUAGGGAACCCAUUUCCGGGGAACGCCGUG2000000006ACUGUCGGGCAGCCUGGAGCUUCCUGCAGCCUCCUACGCAGGGUCCACGCCACGUGGCCUGGGCUGCCA2000000009UCCUGCCGUCCUCCCACUGGCA2000000009UCCUGGCAAGGGGGCGUUGCUUUUCCUGGGCGGCCUUUUAUGUCUUGGAGACACCUGAUGUAAAGUUUCUGUAAAUCUAUUUCAUAUCUGACCCACCAAACAGAUUUCUCU2000000009UUAAUAAAAAUCCUUUUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	196	1198	1283	1550	1568	1668	1737	1759	1870
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	Y	Y	Y
Genomic Coordinates	18:79715034:+	18:79753810:+	18:79753895:+	18:79754162:+	18:79754180:+	18:79754280:+	18:79754349:+	18:79754371:+	18:79754482:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 UKen6WEino9G Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se Lny8GcCeVGc9 BtsJQJ3DteUq dknfVe6BK8aP Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se ArijeGVTwYBw BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8	BtsJQJ3DteUq dknfVe6BK8aP JkWoGWVwjNda Yfn77uLS5tv8