General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000423571
Gene ID:	ENSG00000213347
Gene Name:	MXD3
Sequence (UNICHARACTER ENCODING)	AAAAGUGCUGCAGCCGCUUGCUCCGGCCGGCACCCUAGGCCGGCCCGCCGCCAGCUGUCGCCGACAUGGAACCCUUGGCCAGCAACAPCCAGGUCCUGCUGCAGGCGGCCGAGUUCCUGGAGCGCCGUGAGAGAGAGGCCGAGCAUGGUUAUGCGUCCCUGUGCCCGCAUCGCAGUCCAGGCCCCAPCCACAGGAGGAAGAAGCGACCCCCCCAGGCUCCUGGCGCGCAGGACAGCGGGCGGUCAGUGCACAAUGAACUGGAGAAGCGCAGGAGGGCCCAGUUGAAGCGGUGCCUGGAGCGGCUGAAGCAGCAGAUGCCCCUGGGGGCCGACUGUGCCCGGUACACCACGCUGAGCCUGCUGCGCCGUGCCAGGAUGCACAPCCAGAAGCUGGAGGAUCAGGAGCAGCGGGCCCGACAGCUCAAGGAGAGGCUGCGCAGCAAGCAGCAGAGCCUGCAGCGGCAGCUGGAGCAGCUCCGGGGGCUGGCAGGGGCGGCCGAGCGGGAGCGGCUGCGGGCGGACAGUCUGGACUCCUCAGGCCUCUCCUCUGAGCGCUCAGACUCAGACCAAGGUGAGUGCCCCGAGGCUGAGGGGUUGUGUGGCCCUCGGGGCGAGCCAGGUCUUCUGACCGGACCCCUCCCCGCGCAGAGGAGCUGGAGGUGGAUGUGGAGAGCCUGGUGUUUGGGGGUGAGGCCGAGCUGCUGCGGGGCUUCGUCGCCGGCCAGGAGCACAGCUACUCGCACGGCGGCGGCGCCUGGCUAUGAUGUUCCUCACCCAGGGCGGGCCUCUGCCCUCUACUCGUGCCAGGCCCACUUGCCAGGCAGGAGCCCUCCCCAAGCCUUCAGGGCUGCUCGGAGUCACCUGUUGGAAUGGЖCUAAAAGGЖCCCUUGUGUGGGAACAGGUGCUCCCCAAACACCCUGCUGCUGGCUGCCAGGCAGGCCCUCUGGAAGGGAAGGGGCAGGЖCUCAUCAGGACCUCCCUGGACCCCUGCAGGGCAGGCAGCUUGGGCCCGAGCCCAAGCAUUUGGCUCUGCUGCCCCCAAGGGGACAGGAAGCCUCUUGGGCCUCUUCCCUUCCUGGACAAGGCCCCCUGCCUUUGCCUCACAUAAACUGUACAGUAUUUUCAUUAAAAGCCUCUUUCAUAACUUCCCGUCCAUAGUCUUGCCUAAUGAAAACGGGGGAACUCCCAACCACAGACCCACUGGAAGAGGAAAUAAUAUCAGUUCCCAUCACUGACACUGUUGGCCGUGCCAGGCAGUGCACUUAAUUCUCACAACUUGAGGCUGUUCUGUCUCCACUUCACGGAUGGUAGAAAUGAGGCUGAGUGACGUGACUCGCCUGAGGUCCAAAAACAGUGAAGCCAAGAUUCAAACCAGAGCCUUCCGACUCCAGAGCUGGGGCCAACUGAAUUCAACAAGUAUUUAUUGAGUGUCUAUUAUGUGCUAGAUACUGAGACACAUCAGAGAACAAAACCAAAAGCCCUGCCCUUGUCGGGCUUACAGUCUAGCACUUACCGCCAGUUAACCUGCAGGCUACCU
Sequence (SHORT NAMES ENCODING)	AAAAGUGCUGCAGCCGCUUGCUCCGGCCGGCACCCUAGGCCGGCCCGCCGCCAGCUGUCGCCGACAUGGAACCCUUGGCCAGCAACAYCCAGGUCCUGCUGCAGGCGGCCGAGUUCCUGGAGCGCCGUGAGAGAGAGGCCGAGCAUGGUUAUGCGUCCCUGUGCCCGCAUCGCAGUCCAGGCCCCAYCCACAGGAGGAAGAAGCGACCCCCCCAGGCUCCUGGCGCGCAGGACAGCGGGCGGUCAGUGCACAAUGAACUGGAGAAGCGCAGGAGGGCCCAGUUGAAGCGGUGCCUGGAGCGGCUGAAGCAGCAGAUGCCCCUGGGGGCCGACUGUGCCCGGUACACCACGCUGAGCCUGCUGCGCCGUGCCAGGAUGCACAYCCAGAAGCUGGAGGAUCAGGAGCAGCGGGCCCGACAGCUCAAGGAGAGGCUGCGCAGCAAGCAGCAGAGCCUGCAGCGGCAGCUGGAGCAGCUCCGGGGGCUGGCAGGGGCGGCCGAGCGGGAGCGGCUGCGGGCGGACAGUCUGGACUCCUCAGGCCUCUCCUCUGAGCGCUCAGACUCAGACCAAGGUGAGUGCCCCGAGGCUGAGGGGUUGUGUGGCCCUCGGGGCGAGCCAGGUCUUCUGACCGGACCCCUCCCCGCGCAGAGGAGCUGGAGGUGGAUGUGGAGAGCCUGGUGUUUGGGGGUGAGGCCGAGCUGCUGCGGGGCUUCGUCGCCGGCCAGGAGCACAGCUACUCGCACGGCGGCGGCGCCUGGCUAUGAUGUUCCUCACCCAGGGCGGGCCUCUGCCCUCUACUCGUGCCAGGCCCACUUGCCAGGCAGGAGCCCUCCCCAAGCCUUCAGGGCUGCUCGGAGUCACCUGUUGGAAUGGm6ACUAAAAGGm6ACCCUUGUGUGGGAACAGGUGCUCCCCAAACACCCUGCUGCUGGCUGCCAGGCAGGCCCUCUGGAAGGGAAGGGGCAGGm6ACUCAUCAGGACCUCCCUGGACCCCUGCAGGGCAGGCAGCUUGGGCCCGAGCCCAAGCAUUUGGCUCUGCUGCCCCCAAGGGGACAGGAAGCCUCUUGGGCCUCUUCCCUUCCUGGACAAGGCCCCCUGCCUUUGCCUCACAUAAACUGUACAGUAUUUUCAUUAAAAGCCUCUUUCAUAACUUCCCGUCCAUAGUCUUGCCUAAUGAAAACGGGGGAACUCCCAACCACAGACCCACUGGAAGAGGAAAUAAUAUCAGUUCCCAUCACUGACACUGUUGGCCGUGCCAGGCAGUGCACUUAAUUCUCACAACUUGAGGCUGUUCUGUCUCCACUUCACGGAUGGUAGAAAUGAGGCUGAGUGACGUGACUCGCCUGAGGUCCAAAAACAGUGAAGCCAAGAUUCAAACCAGAGCCUUCCGACUCCAGAGCUGGGGCCAACUGAAUUCAACAAGUAUUUAUUGAGUGUCUAUUAUGUGCUAGAUACUGAGACACAUCAGAGAACAAAACCAAAAGCCCUGCCCUUGUCGGGCUUACAGUCUAGCACUUACCGCCAGUUAACCUGCAGGCUACCU
Sequence (MODOMICS CODE ENCODING)	AAAAGUGCUGCAGCCGCUUGCUCCGGCCGGCACCCUAGGCCGGCCCGCCGCCAGCUGUCGCCGACAUGGAACCCUUGGCCAGCAACA2000000009UCCAGGUCCUGCUGCAGGCGGCCGAGUUCCUGGAGCGCCGUGAGAGAGAGGCCGAGCAUGGUUAUGCGUCCCUGUGCCCGCAUCGCAGUCCAGGCCCCA2000000009UCCACAGGAGGAAGAAGCGACCCCCCCAGGCUCCUGGCGCGCAGGACAGCGGGCGGUCAGUGCACAAUGAACUGGAGAAGCGCAGGAGGGCCCAGUUGAAGCGGUGCCUGGAGCGGCUGAAGCAGCAGAUGCCCCUGGGGGCCGACUGUGCCCGGUACACCACGCUGAGCCUGCUGCGCCGUGCCAGGAUGCACA2000000009UCCAGAAGCUGGAGGAUCAGGAGCAGCGGGCCCGACAGCUCAAGGAGAGGCUGCGCAGCAAGCAGCAGAGCCUGCAGCGGCAGCUGGAGCAGCUCCGGGGGCUGGCAGGGGCGGCCGAGCGGGAGCGGCUGCGGGCGGACAGUCUGGACUCCUCAGGCCUCUCCUCUGAGCGCUCAGACUCAGACCAAGGUGAGUGCCCCGAGGCUGAGGGGUUGUGUGGCCCUCGGGGCGAGCCAGGUCUUCUGACCGGACCCCUCCCCGCGCAGAGGAGCUGGAGGUGGAUGUGGAGAGCCUGGUGUUUGGGGGUGAGGCCGAGCUGCUGCGGGGCUUCGUCGCCGGCCAGGAGCACAGCUACUCGCACGGCGGCGGCGCCUGGCUAUGAUGUUCCUCACCCAGGGCGGGCCUCUGCCCUCUACUCGUGCCAGGCCCACUUGCCAGGCAGGAGCCCUCCCCAAGCCUUCAGGGCUGCUCGGAGUCACCUGUUGGAAUGG2000000006ACUAAAAGG2000000006ACCCUUGUGUGGGAACAGGUGCUCCCCAAACACCCUGCUGCUGGCUGCCAGGCAGGCCCUCUGGAAGGGAAGGGGCAGG2000000006ACUCAUCAGGACCUCCCUGGACCCCUGCAGGGCAGGCAGCUUGGGCCCGAGCCCAAGCAUUUGGCUCUGCUGCCCCCAAGGGGACAGGAAGCCUCUUGGGCCUCUUCCCUUCCUGGACAAGGCCCCCUGCCUUUGCCUCACAUAAACUGUACAGUAUUUUCAUUAAAAGCCUCUUUCAUAACUUCCCGUCCAUAGUCUUGCCUAAUGAAAACGGGGGAACUCCCAACCACAGACCCACUGGAAGAGGAAAUAAUAUCAGUUCCCAUCACUGACACUGUUGGCCGUGCCAGGCAGUGCACUUAAUUCUCACAACUUGAGGCUGUUCUGUCUCCACUUCACGGAUGGUAGAAAUGAGGCUGAGUGACGUGACUCGCCUGAGGUCCAAAAACAGUGAAGCCAAGAUUCAAACCAGAGCCUUCCGACUCCAGAGCUGGGGCCAACUGAAUUCAACAAGUAUUUAUUGAGUGUCUAUUAUGUGCUAGAUACUGAGACACAUCAGAGAACAAAACCAAAAGCCCUGCCCUUGUCGGGCUUACAGUCUAGCACUUACCGCCAGUUAACCUGCAGGCUACCU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	88	187	382	873	882	961
Modification Positions	Y	Y	Y	m6A	m6A	m6A
Genomic Coordinates	5:177311808:-	5:177311433:-	5:177310430:-	5:177307478:-	5:177307469:-	5:177307390:-
Level of Experimental Evidence	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr JkWoGWVwjNda Yfn77uLS5tv8	3TeAZFYFxgvp 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 93arJtwJmuS9 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn 8cMbzB4aD5Se KENzb7mwdBd9 Lny8GcCeVGc9 UKen6WEino9G BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8	6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Lny8GcCeVGc9 834aFpha8RvT dA7YoLwHrzgR ksEP666umrV9 ZuM5xpZmNuDL BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr JkWoGWVwjNda a7o5Kmjr4Tdp Yfn77uLS5tv8