General Data

RNA Type	unknown
Original Source	Sci-ModoM
Transcript ID:	ENST00000515011
Gene ID:	ENSG00000113448
Gene Name:	PDE4D
Sequence (UNICHARACTER ENCODING)	AACGUGGUGGCCGCGCACCCGGCCGCGGCUGAUUCAUUCACUUCAAGUGCCGUGCAGAAGGCUCGGCAGGCGGGGCGGGCGUGGGGCCGCGGCUCCGGGUUGGGGACCGAGGAGAUCCGGCUGUGGACCAGACGCUCCUCUGCGGGGCGGGCACCCAAGCGCGCUCGCCACCCCCUCGCCAUCCGCUAGAGCCGGGCUCCUGGЖCUGGGACUCGGGCCCGCCGCACAGUUGAAAAGUCGCAUAGUGGUUUUUCCGCUCGCGUCGCUGUGUGAAAGUUGGCUCGCCGCUCUUUGCACGCCCUCCCUGGAGGCCGACCCGAGACGCCAAGCUGGAGAGACCGUGCCUCCCCGAGGCCGGCCGCCCCGCGAGCACAGCCUCCGCCCCCGUUGCACUGCCGGGCUGGGCAAUAUGAAGGAGCAGCCCUCAUGUGCCGGCACCGGGCAUCCGAGCAUGGCGGGGUAUGGCAGGAUGGCCCCCUUUGAЖCUCGCUAGCGGACCCGUGAAGCGCUUGAGAЖCUGAGUCCCCCUUUCCCUGUCUCUUCGCAGAGGAGGCCUACCAGAAACUGGCCAGCGAGACCCUGGAGGAGCUGGACUGGUGUCUGGACCAGCUAGAGACCCUACAGACCAGGCACUCCGUCAGUGAGAUGGCCUCCAACAAGUUUAAAAGGAUGCUUAAUCGGGAGCUCACCCAUCUCUCUGAAAUGAGUCGGUCUGGAAAUCAAGUGUCAGAGUUUAUAUCAAACACAUUCUUAGAUAAGCAACAUGAAGUGGAAAUUCCUUCUCCAACUCAGAAGGAAAAGGAGAAAAAGAAAAGACCAAUGUCUCAGAUCAGUGGAGUCAAGAAAUUGAUGCACAGCUCUAGUCUGACUAAUUCAAGUAUCCCAAGGUUUGGAGUUAAAACUGAACAAGAAGAUGUCCUUGCCAAGGAACUAGAAGAUGUGAACAAAUGGGGUCUUCAUGUUUUCAGAAUAGCAGAGUUGUCUGGUAACCGGCCCUUGACUGUUAUCAUGCACACCAUUUUUCAGGAACGGGAUUUAUUAAAAACAUUUAAAAUUCCAGUAGAUACUUUAAUUACAUAUCUUAUGACUCUCGAAGACCAUUACCAUGCUGAUGUGGCCUAUCACAACAAUAUCCAUGCUGCAGAUGUUGUCCAGUCUACUCAUGUGCUAUUAUCUACACCUGCUUUGGAGGCUGUGUUUACЖGAUUUGGAGAUUCUUGCAGCAAUUUUUGCCAGUGCAAUACAUGAUGUAGAUCAUCCUGGUGUGUCCAAUCAAUUUCUGAUCAAUACAAACUCUGAACUUGCCUUGAUGUACAAUGAUUCCUCAGUCUUAGAGAACCAUCAUUUGGCUGUGGGCUUUAAAUUGCUUCAGGAAGAAAACUGUGACAUUUUCCAGAAUUUGACCAAAAAACAAAGACAAUCUUUAAGGAAAAUGGUCAUUGACAUCGUACUUGCAACAGAUAUGUCAAAACACAUGAAUCUACUGGCUGAUUUGAAGACUAUGGUUGAAACUAAGAAAGUGACAAGCUCUGGAGUUCUUCUUCUUGAUAAUUAUUCCGAUAGGAUUCAGGUUCUUCAGAAUAUGGUGCACUGUGCAGAUCUGAGCAACCCAACAAAGCCUCUCCAGCUGUACCGCCAGUGGACGGACCGGAUAAUGGAGGAGUUCUUCCGCCAAGGAGACCGAGAGAGGGAACGUGGCAUGGAGAUAAGCCCCAUGUGUGACAAGCACAAUGCUUCCGUGGAAAAAUCACAGGUGGGCUUCAUAGЖCUAUAUUGUUCAUCCCCUCUGGGAGACAUGGGCAGACCUCGUCCACCCUGACGCCCAGGAUAUUUUGGЖCACUUUGGAGGЖCAAUCGUGAAUGGUACCAGAGCACAAUCCCUCAGAGCCCCUCUCCUGCACCUGAUGACCCAGAGGAGGGCCGGCAGGGUCAAACUGAGAAAUUCCAGUUUGAACUAACUUUAGAGGAAGAUGGUGAGUCAGACACGGAAAAGGЖCAGUGGCAGUCAAGUGGAAGAAGACACUAGCUGCAGUGACUCCAAGЖCUCUUUGUACUCAAGACUCAGAGUCUACUGAAAUUCCCCUUGAUGAЖCAGGUUGAAGAGGAGGCAGUAGGGGAAGAAGAGGAAAGCCAGCCUGAAGCCUGUGUCAUAGAUGAUCGUUCUCCUGACACGUAACAGUGCAAA
Sequence (SHORT NAMES ENCODING)	AACGUGGUGGCCGCGCACCCGGCCGCGGCUGAUUCAUUCACUUCAAGUGCCGUGCAGAAGGCUCGGCAGGCGGGGCGGGCGUGGGGCCGCGGCUCCGGGUUGGGGACCGAGGAGAUCCGGCUGUGGACCAGACGCUCCUCUGCGGGGCGGGCACCCAAGCGCGCUCGCCACCCCCUCGCCAUCCGCUAGAGCCGGGCUCCUGGm6ACUGGGACUCGGGCCCGCCGCACAGUUGAAAAGUCGCAUAGUGGUUUUUCCGCUCGCGUCGCUGUGUGAAAGUUGGCUCGCCGCUCUUUGCACGCCCUCCCUGGAGGCCGACCCGAGACGCCAAGCUGGAGAGACCGUGCCUCCCCGAGGCCGGCCGCCCCGCGAGCACAGCCUCCGCCCCCGUUGCACUGCCGGGCUGGGCAAUAUGAAGGAGCAGCCCUCAUGUGCCGGCACCGGGCAUCCGAGCAUGGCGGGGUAUGGCAGGAUGGCCCCCUUUGAm6ACUCGCUAGCGGACCCGUGAAGCGCUUGAGAm6ACUGAGUCCCCCUUUCCCUGUCUCUUCGCAGAGGAGGCCUACCAGAAACUGGCCAGCGAGACCCUGGAGGAGCUGGACUGGUGUCUGGACCAGCUAGAGACCCUACAGACCAGGCACUCCGUCAGUGAGAUGGCCUCCAACAAGUUUAAAAGGAUGCUUAAUCGGGAGCUCACCCAUCUCUCUGAAAUGAGUCGGUCUGGAAAUCAAGUGUCAGAGUUUAUAUCAAACACAUUCUUAGAUAAGCAACAUGAAGUGGAAAUUCCUUCUCCAACUCAGAAGGAAAAGGAGAAAAAGAAAAGACCAAUGUCUCAGAUCAGUGGAGUCAAGAAAUUGAUGCACAGCUCUAGUCUGACUAAUUCAAGUAUCCCAAGGUUUGGAGUUAAAACUGAACAAGAAGAUGUCCUUGCCAAGGAACUAGAAGAUGUGAACAAAUGGGGUCUUCAUGUUUUCAGAAUAGCAGAGUUGUCUGGUAACCGGCCCUUGACUGUUAUCAUGCACACCAUUUUUCAGGAACGGGAUUUAUUAAAAACAUUUAAAAUUCCAGUAGAUACUUUAAUUACAUAUCUUAUGACUCUCGAAGACCAUUACCAUGCUGAUGUGGCCUAUCACAACAAUAUCCAUGCUGCAGAUGUUGUCCAGUCUACUCAUGUGCUAUUAUCUACACCUGCUUUGGAGGCUGUGUUUACm6AGAUUUGGAGAUUCUUGCAGCAAUUUUUGCCAGUGCAAUACAUGAUGUAGAUCAUCCUGGUGUGUCCAAUCAAUUUCUGAUCAAUACAAACUCUGAACUUGCCUUGAUGUACAAUGAUUCCUCAGUCUUAGAGAACCAUCAUUUGGCUGUGGGCUUUAAAUUGCUUCAGGAAGAAAACUGUGACAUUUUCCAGAAUUUGACCAAAAAACAAAGACAAUCUUUAAGGAAAAUGGUCAUUGACAUCGUACUUGCAACAGAUAUGUCAAAACACAUGAAUCUACUGGCUGAUUUGAAGACUAUGGUUGAAACUAAGAAAGUGACAAGCUCUGGAGUUCUUCUUCUUGAUAAUUAUUCCGAUAGGAUUCAGGUUCUUCAGAAUAUGGUGCACUGUGCAGAUCUGAGCAACCCAACAAAGCCUCUCCAGCUGUACCGCCAGUGGACGGACCGGAUAAUGGAGGAGUUCUUCCGCCAAGGAGACCGAGAGAGGGAACGUGGCAUGGAGAUAAGCCCCAUGUGUGACAAGCACAAUGCUUCCGUGGAAAAAUCACAGGUGGGCUUCAUAGm6ACUAUAUUGUUCAUCCCCUCUGGGAGACAUGGGCAGACCUCGUCCACCCUGACGCCCAGGAUAUUUUGGm6ACACUUUGGAGGm6ACAAUCGUGAAUGGUACCAGAGCACAAUCCCUCAGAGCCCCUCUCCUGCACCUGAUGACCCAGAGGAGGGCCGGCAGGGUCAAACUGAGAAAUUCCAGUUUGAACUAACUUUAGAGGAAGAUGGUGAGUCAGACACGGAAAAGGm6ACAGUGGCAGUCAAGUGGAAGAAGACACUAGCUGCAGUGACUCCAAGm6ACUCUUUGUACUCAAGACUCAGAGUCUACUGAAAUUCCCCUUGAUGAm6ACAGGUUGAAGAGGAGGCAGUAGGGGAAGAAGAGGAAAGCCAGCCUGAAGCCUGUGUCAUAGAUGAUCGUUCUCCUGACACGUAACAGUGCAAA
Sequence (MODOMICS CODE ENCODING)	AACGUGGUGGCCGCGCACCCGGCCGCGGCUGAUUCAUUCACUUCAAGUGCCGUGCAGAAGGCUCGGCAGGCGGGGCGGGCGUGGGGCCGCGGCUCCGGGUUGGGGACCGAGGAGAUCCGGCUGUGGACCAGACGCUCCUCUGCGGGGCGGGCACCCAAGCGCGCUCGCCACCCCCUCGCCAUCCGCUAGAGCCGGGCUCCUGG2000000006ACUGGGACUCGGGCCCGCCGCACAGUUGAAAAGUCGCAUAGUGGUUUUUCCGCUCGCGUCGCUGUGUGAAAGUUGGCUCGCCGCUCUUUGCACGCCCUCCCUGGAGGCCGACCCGAGACGCCAAGCUGGAGAGACCGUGCCUCCCCGAGGCCGGCCGCCCCGCGAGCACAGCCUCCGCCCCCGUUGCACUGCCGGGCUGGGCAAUAUGAAGGAGCAGCCCUCAUGUGCCGGCACCGGGCAUCCGAGCAUGGCGGGGUAUGGCAGGAUGGCCCCCUUUGA2000000006ACUCGCUAGCGGACCCGUGAAGCGCUUGAGA2000000006ACUGAGUCCCCCUUUCCCUGUCUCUUCGCAGAGGAGGCCUACCAGAAACUGGCCAGCGAGACCCUGGAGGAGCUGGACUGGUGUCUGGACCAGCUAGAGACCCUACAGACCAGGCACUCCGUCAGUGAGAUGGCCUCCAACAAGUUUAAAAGGAUGCUUAAUCGGGAGCUCACCCAUCUCUCUGAAAUGAGUCGGUCUGGAAAUCAAGUGUCAGAGUUUAUAUCAAACACAUUCUUAGAUAAGCAACAUGAAGUGGAAAUUCCUUCUCCAACUCAGAAGGAAAAGGAGAAAAAGAAAAGACCAAUGUCUCAGAUCAGUGGAGUCAAGAAAUUGAUGCACAGCUCUAGUCUGACUAAUUCAAGUAUCCCAAGGUUUGGAGUUAAAACUGAACAAGAAGAUGUCCUUGCCAAGGAACUAGAAGAUGUGAACAAAUGGGGUCUUCAUGUUUUCAGAAUAGCAGAGUUGUCUGGUAACCGGCCCUUGACUGUUAUCAUGCACACCAUUUUUCAGGAACGGGAUUUAUUAAAAACAUUUAAAAUUCCAGUAGAUACUUUAAUUACAUAUCUUAUGACUCUCGAAGACCAUUACCAUGCUGAUGUGGCCUAUCACAACAAUAUCCAUGCUGCAGAUGUUGUCCAGUCUACUCAUGUGCUAUUAUCUACACCUGCUUUGGAGGCUGUGUUUAC2000000006AGAUUUGGAGAUUCUUGCAGCAAUUUUUGCCAGUGCAAUACAUGAUGUAGAUCAUCCUGGUGUGUCCAAUCAAUUUCUGAUCAAUACAAACUCUGAACUUGCCUUGAUGUACAAUGAUUCCUCAGUCUUAGAGAACCAUCAUUUGGCUGUGGGCUUUAAAUUGCUUCAGGAAGAAAACUGUGACAUUUUCCAGAAUUUGACCAAAAAACAAAGACAAUCUUUAAGGAAAAUGGUCAUUGACAUCGUACUUGCAACAGAUAUGUCAAAACACAUGAAUCUACUGGCUGAUUUGAAGACUAUGGUUGAAACUAAGAAAGUGACAAGCUCUGGAGUUCUUCUUCUUGAUAAUUAUUCCGAUAGGAUUCAGGUUCUUCAGAAUAUGGUGCACUGUGCAGAUCUGAGCAACCCAACAAAGCCUCUCCAGCUGUACCGCCAGUGGACGGACCGGAUAAUGGAGGAGUUCUUCCGCCAAGGAGACCGAGAGAGGGAACGUGGCAUGGAGAUAAGCCCCAUGUGUGACAAGCACAAUGCUUCCGUGGAAAAAUCACAGGUGGGCUUCAUAG2000000006ACUAUAUUGUUCAUCCCCUCUGGGAGACAUGGGCAGACCUCGUCCACCCUGACGCCCAGGAUAUUUUGG2000000006ACACUUUGGAGG2000000006ACAAUCGUGAAUGGUACCAGAGCACAAUCCCUCAGAGCCCCUCUCCUGCACCUGAUGACCCAGAGGAGGGCCGGCAGGGUCAAACUGAGAAAUUCCAGUUUGAACUAACUUUAGAGGAAGAUGGUGAGUCAGACACGGAAAAGG2000000006ACAGUGGCAGUCAAGUGGAAGAAGACACUAGCUGCAGUGACUCCAAG2000000006ACUCUUUGUACUCAAGACUCAGAGUCUACUGAAAUUCCCCUUGAUGA2000000006ACAGGUUGAAGAGGAGGCAGUAGGGGAAGAAGAGGAAAGCCAGCCUGAAGCCUGUGUCAUAGAUGAUCGUUCUCCUGACACGUAACAGUGCAAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	204	483	514	1200	1763	1832	1844	1988	2035	2082
Modification Positions	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A
Genomic Coordinates	5:59039312:-	5:59039033:-	5:59039002:-	5:58988581:-	5:58975067:-	5:58974998:-	5:58974986:-	5:58974842:-	5:58974795:-	5:58974748:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	3TeAZFYFxgvp msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VyCX26p5UBRL Lny8GcCeVGc9	3TeAZFYFxgvp msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf WdHxkJGRmFxn	3TeAZFYFxgvp msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VyCX26p5UBRL Lny8GcCeVGc9	3kRDPWwiRCgi L6w2k2VEv4EY	3TeAZFYFxgvp 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 6AyXsheySjfx 6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 PF5iqBNSbHaa UKen6WEino9G	3TeAZFYFxgvp 5FhTyQVy2tKW 6UuHp6YApVKv jNkxUQNx8GRd Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3	3TeAZFYFxgvp 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn UKen6WEino9G	3TeAZFYFxgvp 6UuHp6YApVKv jNkxUQNx8GRd msuJfBpJvM5H NjZ8bGGJsNSR Q36pf44ZRvxu UN3tNpbCPHYf VL7zkHvkfkoB WdHxkJGRmFxn UKen6WEino9G