General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000511817
Gene ID:	ENSG00000152422
Gene Name:	XRCC4
Sequence (UNICHARACTER ENCODING)	ACCGGAAGUAGAGUCACGGAGAGGUAGGAUCCGGAAGUGGGGCUGCCUCUUUAAAUAACAAAAAUCUGAGGUAUUAAGAAAUGGAGAGAAAAAUAAGCAGAAUCCACCUUGUUUCUGAACCCAGUAUAACUCAUUUUCUACAAGUAUCUUGGGAGAAAACACUGGAAUCUGGUUUUGUUAUUACACUUACUGAUGGUCAUUCAGCAUGGACUGGGACAGUUUCUGAAUCAGAGAUUUCCCAAGAAGCUGAUGACAUGGCAAUGGAAAAAGGGAAAUAUGUUGGUGAACUGAGAAAAGCAUUGUUGUCAGGAGCAGGACCAGCUGAUGUAUACACGUUUAAUUUUUCUAAAGAGUCUUGUUAUUUCUUCUUUGAGAAAAACCUGAAAGAUGUCUCAUUCAGACUUGGUUCCUUCAACCUAGAGAAAGUUGAAAACCCAGCUGAAGUCAUUAGAGAACUUAUUUGUUAUUGCUUGGACACCAUUGCAGAAAAUCAAGCCAAAAAUGAGCACCUGCAGAAAGAAAAUGAAAGGCUUCUGAGAGAUUGGAAUGAUGUUCAAGGACGAUPUGAAAAAUGUGUGAGUGCUAAGGAAGCUUUGGAGACUGAUCUPUAUAAGCGGUUUAUUCUGGUGUUGAAUGAGAAGAAAACAAAAAUCAGAAGUUUGCAUAAUAAAUUAUUAAAUGCAGCUCAAGAACGAGAAAAGGACAUCAAACAAGAAGGGGAAACUGCAAUCUGUUCUGAAAUGACUGCUGACCGAGAUCCAGUCUAUGAUGAGAGUACUGAUGAGGAAAGUGAAAACCAAACUGAUCUCUCUGGGUUGGCUUCAGCUGCUGUAAGUAAAGAUGAUUCCAUUAUUUCAAGUCUUGAUGUCACUGAUAUUGCACCAAGUAGAAAAAGGAGACAGCGAAUGCAAAGAAAUCUUGGGACAGAACCUAAAAUGGCUCCUCAGGAGAAUCAGCUUCAAGAAAAGGAAAAUUCUAGGCCUGAUUCUUCACUACCUGAGACGUCUAAAAAGGAGCACAUCUCAGCUGAAAACAUGUCUPUAGAAACUCUGAGAAЖCAGCAGCCCAGAAGACCUCUUUGAUGAGAUUUAACAGUCUCAAAAAAUACUUUGAUGUUCACUAGACUAUGUUUUCUAUUCAUUUCUPUAAAAUGAAAAAGGAGAAUUUCAAGUCAGCAGCCGCUAUUACCGUAUCUUACAAUUUAAUUACAUACACAGUGAAUUGAAACCAUUGUGCAAAAUGGAUUACACAUGUAUACAAAGAUACGAUUUGAUGAUGACACUGGCACAUUAUUCUAAACUAUUCAUUCAGCAUGCCUAUAAUUACAUAAAUUGUAUGAGACUUUUUGUUGCAAAGGACACAUUUAUCAUAUUCAUUCACACAUAUUAUAUGUGAUAGCUGUCCAACAPCCUGUCUGGGAAGAUUUUGAAAACAGGACAAAGAAAACAUCAUUUUAAAAUGUCUUCAGCUUUUUUUGAAUAGACGUAUUCAAACAUAUUCUGAACAUUGAUGUUUGAACAUUUUAAUUUGUGUGAUGAUGUAGAAAAUAUAAUUUUAGUUUGUACAUAAЖCAUUGUGAAAAUCUGAUAAUAAAAUUUUUGAUACAUUGAAGAUUUUGUGUUUUUAAUAAAAUGUGUU
Sequence (SHORT NAMES ENCODING)	ACCGGAAGUAGAGUCACGGAGAGGUAGGAUCCGGAAGUGGGGCUGCCUCUUUAAAUAACAAAAAUCUGAGGUAUUAAGAAAUGGAGAGAAAAAUAAGCAGAAUCCACCUUGUUUCUGAACCCAGUAUAACUCAUUUUCUACAAGUAUCUUGGGAGAAAACACUGGAAUCUGGUUUUGUUAUUACACUUACUGAUGGUCAUUCAGCAUGGACUGGGACAGUUUCUGAAUCAGAGAUUUCCCAAGAAGCUGAUGACAUGGCAAUGGAAAAAGGGAAAUAUGUUGGUGAACUGAGAAAAGCAUUGUUGUCAGGAGCAGGACCAGCUGAUGUAUACACGUUUAAUUUUUCUAAAGAGUCUUGUUAUUUCUUCUUUGAGAAAAACCUGAAAGAUGUCUCAUUCAGACUUGGUUCCUUCAACCUAGAGAAAGUUGAAAACCCAGCUGAAGUCAUUAGAGAACUUAUUUGUUAUUGCUUGGACACCAUUGCAGAAAAUCAAGCCAAAAAUGAGCACCUGCAGAAAGAAAAUGAAAGGCUUCUGAGAGAUUGGAAUGAUGUUCAAGGACGAUYUGAAAAAUGUGUGAGUGCUAAGGAAGCUUUGGAGACUGAUCUYUAUAAGCGGUUUAUUCUGGUGUUGAAUGAGAAGAAAACAAAAAUCAGAAGUUUGCAUAAUAAAUUAUUAAAUGCAGCUCAAGAACGAGAAAAGGACAUCAAACAAGAAGGGGAAACUGCAAUCUGUUCUGAAAUGACUGCUGACCGAGAUCCAGUCUAUGAUGAGAGUACUGAUGAGGAAAGUGAAAACCAAACUGAUCUCUCUGGGUUGGCUUCAGCUGCUGUAAGUAAAGAUGAUUCCAUUAUUUCAAGUCUUGAUGUCACUGAUAUUGCACCAAGUAGAAAAAGGAGACAGCGAAUGCAAAGAAAUCUUGGGACAGAACCUAAAAUGGCUCCUCAGGAGAAUCAGCUUCAAGAAAAGGAAAAUUCUAGGCCUGAUUCUUCACUACCUGAGACGUCUAAAAAGGAGCACAUCUCAGCUGAAAACAUGUCUYUAGAAACUCUGAGAAm6ACAGCAGCCCAGAAGACCUCUUUGAUGAGAUUUAACAGUCUCAAAAAAUACUUUGAUGUUCACUAGACUAUGUUUUCUAUUCAUUUCUYUAAAAUGAAAAAGGAGAAUUUCAAGUCAGCAGCCGCUAUUACCGUAUCUUACAAUUUAAUUACAUACACAGUGAAUUGAAACCAUUGUGCAAAAUGGAUUACACAUGUAUACAAAGAUACGAUUUGAUGAUGACACUGGCACAUUAUUCUAAACUAUUCAUUCAGCAUGCCUAUAAUUACAUAAAUUGUAUGAGACUUUUUGUUGCAAAGGACACAUUUAUCAUAUUCAUUCACACAUAUUAUAUGUGAUAGCUGUCCAACAYCCUGUCUGGGAAGAUUUUGAAAACAGGACAAAGAAAACAUCAUUUUAAAAUGUCUUCAGCUUUUUUUGAAUAGACGUAUUCAAACAUAUUCUGAACAUUGAUGUUUGAACAUUUUAAUUUGUGUGAUGAUGUAGAAAAUAUAAUUUUAGUUUGUACAUAAm6ACAUUGUGAAAAUCUGAUAAUAAAAUUUUUGAUACAUUGAAGAUUUUGUGUUUUUAAUAAAAUGUGUU
Sequence (MODOMICS CODE ENCODING)	ACCGGAAGUAGAGUCACGGAGAGGUAGGAUCCGGAAGUGGGGCUGCCUCUUUAAAUAACAAAAAUCUGAGGUAUUAAGAAAUGGAGAGAAAAAUAAGCAGAAUCCACCUUGUUUCUGAACCCAGUAUAACUCAUUUUCUACAAGUAUCUUGGGAGAAAACACUGGAAUCUGGUUUUGUUAUUACACUUACUGAUGGUCAUUCAGCAUGGACUGGGACAGUUUCUGAAUCAGAGAUUUCCCAAGAAGCUGAUGACAUGGCAAUGGAAAAAGGGAAAUAUGUUGGUGAACUGAGAAAAGCAUUGUUGUCAGGAGCAGGACCAGCUGAUGUAUACACGUUUAAUUUUUCUAAAGAGUCUUGUUAUUUCUUCUUUGAGAAAAACCUGAAAGAUGUCUCAUUCAGACUUGGUUCCUUCAACCUAGAGAAAGUUGAAAACCCAGCUGAAGUCAUUAGAGAACUUAUUUGUUAUUGCUUGGACACCAUUGCAGAAAAUCAAGCCAAAAAUGAGCACCUGCAGAAAGAAAAUGAAAGGCUUCUGAGAGAUUGGAAUGAUGUUCAAGGACGAU2000000009UUGAAAAAUGUGUGAGUGCUAAGGAAGCUUUGGAGACUGAUCU2000000009UUAUAAGCGGUUUAUUCUGGUGUUGAAUGAGAAGAAAACAAAAAUCAGAAGUUUGCAUAAUAAAUUAUUAAAUGCAGCUCAAGAACGAGAAAAGGACAUCAAACAAGAAGGGGAAACUGCAAUCUGUUCUGAAAUGACUGCUGACCGAGAUCCAGUCUAUGAUGAGAGUACUGAUGAGGAAAGUGAAAACCAAACUGAUCUCUCUGGGUUGGCUUCAGCUGCUGUAAGUAAAGAUGAUUCCAUUAUUUCAAGUCUUGAUGUCACUGAUAUUGCACCAAGUAGAAAAAGGAGACAGCGAAUGCAAAGAAAUCUUGGGACAGAACCUAAAAUGGCUCCUCAGGAGAAUCAGCUUCAAGAAAAGGAAAAUUCUAGGCCUGAUUCUUCACUACCUGAGACGUCUAAAAAGGAGCACAUCUCAGCUGAAAACAUGUCU2000000009UUAGAAACUCUGAGAA2000000006ACAGCAGCCCAGAAGACCUCUUUGAUGAGAUUUAACAGUCUCAAAAAAUACUUUGAUGUUCACUAGACUAUGUUUUCUAUUCAUUUCU2000000009UUAAAAUGAAAAAGGAGAAUUUCAAGUCAGCAGCCGCUAUUACCGUAUCUUACAAUUUAAUUACAUACACAGUGAAUUGAAACCAUUGUGCAAAAUGGAUUACACAUGUAUACAAAGAUACGAUUUGAUGAUGACACUGGCACAUUAUUCUAAACUAUUCAUUCAGCAUGCCUAUAAUUACAUAAAUUGUAUGAGACUUUUUGUUGCAAAGGACACAUUUAUCAUAUUCAUUCACACAUAUUAUAUGUGAUAGCUGUCCAACA2000000009UCCUGUCUGGGAAGAUUUUGAAAACAGGACAAAGAAAACAUCAUUUUAAAAUGUCUUCAGCUUUUUUUGAAUAGACGUAUUCAAACAUAUUCUGAACAUUGAUGUUUGAACAUUUUAAUUUGUGUGAUGAUGUAGAAAAUAUAAUUUUAGUUUGUACAUAA2000000006ACAUUGUGAAAAUCUGAUAAUAAAAUUUUUGAUACAUUGAAGAUUUUGUGUUUUUAAUAAAAUGUGUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	565	608	1041	1057	1145	1408	1569
Modification Positions	Y	Y	Y	m6A	Y	Y	m6A
Genomic Coordinates	5:83203554:+	5:83203597:+	5:83353192:+	5:83353208:+	5:83353296:+	5:83353559:+	5:83353720:+
Level of Experimental Evidence	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP	BtsJQJ3DteUq dknfVe6BK8aP iezFbUdmY3A6