Modomics - A Database of RNA Modifications

General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000313368
Gene ID:	ENSG00000178913
Gene Name:	TAF7
Sequence (UNICHARACTER ENCODING)	ACUUCCGUUUUUGCUGGGUAGGCGACCCGGACGGAGGGCCGGCGAGGUGCGGGGUCUGGUGAUGCGAGCUGCGCCUCUCGGCAAGAUUUCGCGCUGCCCAPCCCGGGCCCUUUCAUCAGUAAUCGGUAGUGGAUCACUCUGCCAAGCGGCAGGAAGAAUUAAGGAAACGACAAGGAGACGCUCGGCUCUCUCCCGCUUGGCUCCUUGCGGCCUCCUCUUCCCUUCGCUCCGGCCCGGUGAAACUGAЖCUUAUAAUCGUCACUGGAUUGUAAGUACCCGAGGCGAAGAGAGCUCGCUGAGCCCUGAUUUUUUGAGUGUCUUUGUUCCGGGAGAGUUUGUGAGUUGAAAGUAUCUCUGCUGGGCUUUCUGGGCCGAAAACCGUUCCGGGGGAGCCGCCAUUUGCUUUCCUGUUCCCUAGCUAGCUAGCUAGCUCUCUCCGCGUUGUCCGGCAGCGGCACCUAGAGGUUGGGЖCUUGGCAUUGCAUCUGAUUUAAUGAЖCUUAAGUCUGUGAAUAAGCCUUUGUGUUAACGACUGGUAUUCGGUCACAGCAUAUUUAGAGAAAAGЖCUUGGAGCUUAAAUAAAAACUAAGGCAAAAUAGЖCGCUUAGCUGCUGAUCUACЖGAGAЖCUUCUUGUAAUUAAAAGAUUUCAAUUCAUAGCAAЖCUGGUGUUUUAAACUAUUGCAGUAGCUGGAЖCUUUUUAGUGUAACCAGCAUUUAUUGGAGAAGUGAAUCACAAGGAAAUAAAGAUGAGUAAAAGCAAAGAUGAUGCUCCUCACGAЖCUGGAGAGCCAGUUUAUCUUACGUCUGCCUCCAGAAUAUGCCUCUACUGUGAGAAGGGCAGUACAGUCUGGUCAUGUCAACCUCAAGGЖCAGЖCUGACAAUUGAGUUACЖ PCCUGAUGGGCGUCAUGGAAUCGUCAGAGUGGACCGUGUUCCAUUGGCCUCAAAAUUAGUAGЖCCUGCCCUGUGUUAUGGAAAGCUUGAAAACCAUUGAUAAAAAAЖCUUUUUACAAGACAGCUGAUAUCUGUCAGAUGCUUGUAUCCACAGUUGAUGGUGAUCUCUAUCCUCCUGUGGAGGAGCCAGUUGCUAGCACUGAUCCUAAAGCAAGCAAGAAAAAGGAUAAGGACAAAGAGAAAAAGUUUAUCUGGAЖCCACGGAAUUACUCUGCCUCUAAAGAAUGUCAGGAAGAGAAGGUUCCGGAAGACAGCAAAGAAGAAAUAUAUUGAAUCUCCAGAUGUUGAAAAAGAAGUGAAACGAUUGCUGAGUACAGAUGCUGAAGCUGUUAGUACUCGGUGGGAAAUAAUUGCCGAAGAUGAAACAAAGGAGGCAGAAAAUCAAGGCCUGGAUAUCUCUUCUCCAGGAAUGUCUGGUCACAGGCAGGGCCAUGACUCAUUAGAACAUGAUGAGCUUCGGGAGAUAUUCAAUGACCUCAGCAGCAGCAGUGAGGAUGAAGAUGAGACCCAGCAUCAAGAUGAAGAAGAUAUAAACAUCAUUGACACGGAGGAAGAUCUGGAGAGACAGCUACAGGACAAGCUAAAUGAAUCAGAUGAЖCAGCACCAGGAAAAUGAAGGAACCAAUCAGCUGGUUAUGGGAAUUCAGAAGCAGAUUGACAACAUGAAAGGCAAGCUCCAAGAGЖCCCAGGACAGGGCAAAACGACAAGAGGAUCUCAUCAUGAAAGUGGAAAAUCUGGCUCUCAAGAACAGAUUUCAGGCUGUACUGGAUGAGCUCAAЖCAAAAGGAAGЖCCGAGAAAAGGAGCAACUCAGCUCUUUGCAAGAGGAGCUAGAAUCACUCCUAGAGAAGUAAAAAGAЖCUGAUAUUUAAUUUCAGUCUUCA#ЖCUGGUCAGCAUUAGAAAAUUCUUGGCUPUAUUGUACUGGGUAUUAAGACCUUGCUCUUCCUAGUCCUUUUAAUGCUGUGUGUUCUGUUAAGUUCUUUCAUUUGUUUGUAAUUUUGUUUUUCAGCAAAUUUAUAUUGUUUUGCUAGGUGUUCAPCCUAUAAGAAGCAGGAUUGUAUAGGCAGAAAAAUGAUUGUAGGAAAGUUGCAGGAUUAGCGGAAUGUAUGGUUCAACCUUAAUUAUAGCUUCAUUGCAGGЖCUPUACUGUUUCUCCAUUUUCUAGAAGCUGCUGUUGCUGCUUUGUGAUGACGUGAGAUCAAUAAGAAGAACCUAGUCUAGAGЖCAAUGAUGCUAGUUUGCAUAUGUUUUCCUAUGCAAUAAUUGUUUUCCCAGUUAUUCAAAGCAGCUUUCUAUAUGUAGAGAUGCAAAUUAUUAAGUUGUUUCCAAUACAAUAAAUAAAAGCAUCUGUUUUUCACUUUA
Sequence (SHORT NAMES ENCODING)	ACUUCCGUUUUUGCUGGGUAGGCGACCCGGACGGAGGGCCGGCGAGGUGCGGGGUCUGGUGAUGCGAGCUGCGCCUCUCGGCAAGAUUUCGCGCUGCCCAYCCCGGGCCCUUUCAUCAGUAAUCGGUAGUGGAUCACUCUGCCAAGCGGCAGGAAGAAUUAAGGAAACGACAAGGAGACGCUCGGCUCUCUCCCGCUUGGCUCCUUGCGGCCUCCUCUUCCCUUCGCUCCGGCCCGGUGAAACUGAm6ACUUAUAAUCGUCACUGGAUUGUAAGUACCCGAGGCGAAGAGAGCUCGCUGAGCCCUGAUUUUUUGAGUGUCUUUGUUCCGGGAGAGUUUGUGAGUUGAAAGUAUCUCUGCUGGGCUUUCUGGGCCGAAAACCGUUCCGGGGGAGCCGCCAUUUGCUUUCCUGUUCCCUAGCUAGCUAGCUAGCUCUCUCCGCGUUGUCCGGCAGCGGCACCUAGAGGUUGGGm6ACUUGGCAUUGCAUCUGAUUUAAUGAm6ACUUAAGUCUGUGAAUAAGCCUUUGUGUUAACGACUGGUAUUCGGUCACAGCAUAUUUAGAGAAAAGm6ACUUGGAGCUUAAAUAAAAACUAAGGCAAAAUAGm6ACGCUUAGCUGCUGAUCUACm6AGAGAm6ACUUCUUGUAAUUAAAAGAUUUCAAUUCAUAGCAAm6ACUGGUGUUUUAAACUAUUGCAGUAGCUGGAm6ACUUUUUAGUGUAACCAGCAUUUAUUGGAGAAGUGAAUCACAAGGAAAUAAAGAUGAGUAAAAGCAAAGAUGAUGCUCCUCACGAm6ACUGGAGAGCCAGUUUAUCUUACGUCUGCCUCCAGAAUAUGCCUCUACUGUGAGAAGGGCAGUACAGUCUGGUCAUGUCAACCUCAAGGm6ACAGm6ACUGACAAUUGAGUUACm6A YCCUGAUGGGCGUCAUGGAAUCGUCAGAGUGGACCGUGUUCCAUUGGCCUCAAAAUUAGUAGm6ACCUGCCCUGUGUUAUGGAAAGCUUGAAAACCAUUGAUAAAAAAm6ACUUUUUACAAGACAGCUGAUAUCUGUCAGAUGCUUGUAUCCACAGUUGAUGGUGAUCUCUAUCCUCCUGUGGAGGAGCCAGUUGCUAGCACUGAUCCUAAAGCAAGCAAGAAAAAGGAUAAGGACAAAGAGAAAAAGUUUAUCUGGAm6ACCACGGAAUUACUCUGCCUCUAAAGAAUGUCAGGAAGAGAAGGUUCCGGAAGACAGCAAAGAAGAAAUAUAUUGAAUCUCCAGAUGUUGAAAAAGAAGUGAAACGAUUGCUGAGUACAGAUGCUGAAGCUGUUAGUACUCGGUGGGAAAUAAUUGCCGAAGAUGAAACAAAGGAGGCAGAAAAUCAAGGCCUGGAUAUCUCUUCUCCAGGAAUGUCUGGUCACAGGCAGGGCCAUGACUCAUUAGAACAUGAUGAGCUUCGGGAGAUAUUCAAUGACCUCAGCAGCAGCAGUGAGGAUGAAGAUGAGACCCAGCAUCAAGAUGAAGAAGAUAUAAACAUCAUUGACACGGAGGAAGAUCUGGAGAGACAGCUACAGGACAAGCUAAAUGAAUCAGAUGAm6ACAGCACCAGGAAAAUGAAGGAACCAAUCAGCUGGUUAUGGGAAUUCAGAAGCAGAUUGACAACAUGAAAGGCAAGCUCCAAGAGm6ACCCAGGACAGGGCAAAACGACAAGAGGAUCUCAUCAUGAAAGUGGAAAAUCUGGCUCUCAAGAACAGAUUUCAGGCUGUACUGGAUGAGCUCAAm6ACAAAAGGAAGm6ACCGAGAAAAGGAGCAACUCAGCUCUUUGCAAGAGGAGCUAGAAUCACUCCUAGAGAAGUAAAAAGAm6ACUGAUAUUUAAUUUCAGUCUUCAGm m6ACUGGUCAGCAUUAGAAAAUUCUUGGCUYUAUUGUACUGGGUAUUAAGACCUUGCUCUUCCUAGUCCUUUUAAUGCUGUGUGUUCUGUUAAGUUCUUUCAUUUGUUUGUAAUUUUGUUUUUCAGCAAAUUUAUAUUGUUUUGCUAGGUGUUCAYCCUAUAAGAAGCAGGAUUGUAUAGGCAGAAAAAUGAUUGUAGGAAAGUUGCAGGAUUAGCGGAAUGUAUGGUUCAACCUUAAUUAUAGCUUCAUUGCAGGm6ACUYUACUGUUUCUCCAUUUUCUAGAAGCUGCUGUUGCUGCUUUGUGAUGACGUGAGAUCAAUAAGAAGAACCUAGUCUAGAGm6ACAAUGAUGCUAGUUUGCAUAUGUUUUCCUAUGCAAUAAUUGUUUUCCCAGUUAUUCAAAGCAGCUUUCUAUAUGUAGAGAUGCAAAUUAUUAAGUUGUUUCCAAUACAAUAAAUAAAAGCAUCUGUUUUUCACUUUA
Sequence (MODOMICS CODE ENCODING)	ACUUCCGUUUUUGCUGGGUAGGCGACCCGGACGGAGGGCCGGCGAGGUGCGGGGUCUGGUGAUGCGAGCUGCGCCUCUCGGCAAGAUUUCGCGCUGCCCA2000000009UCCCGGGCCCUUUCAUCAGUAAUCGGUAGUGGAUCACUCUGCCAAGCGGCAGGAAGAAUUAAGGAAACGACAAGGAGACGCUCGGCUCUCUCCCGCUUGGCUCCUUGCGGCCUCCUCUUCCCUUCGCUCCGGCCCGGUGAAACUGA2000000006ACUUAUAAUCGUCACUGGAUUGUAAGUACCCGAGGCGAAGAGAGCUCGCUGAGCCCUGAUUUUUUGAGUGUCUUUGUUCCGGGAGAGUUUGUGAGUUGAAAGUAUCUCUGCUGGGCUUUCUGGGCCGAAAACCGUUCCGGGGGAGCCGCCAUUUGCUUUCCUGUUCCCUAGCUAGCUAGCUAGCUCUCUCCGCGUUGUCCGGCAGCGGCACCUAGAGGUUGGG2000000006ACUUGGCAUUGCAUCUGAUUUAAUGA2000000006ACUUAAGUCUGUGAAUAAGCCUUUGUGUUAACGACUGGUAUUCGGUCACAGCAUAUUUAGAGAAAAG2000000006ACUUGGAGCUUAAAUAAAAACUAAGGCAAAAUAG2000000006ACGCUUAGCUGCUGAUCUAC2000000006AGAGA2000000006ACUUCUUGUAAUUAAAAGAUUUCAAUUCAUAGCAA2000000006ACUGGUGUUUUAAACUAUUGCAGUAGCUGGA2000000006ACUUUUUAGUGUAACCAGCAUUUAUUGGAGAAGUGAAUCACAAGGAAAUAAAGAUGAGUAAAAGCAAAGAUGAUGCUCCUCACGA2000000006ACUGGAGAGCCAGUUUAUCUUACGUCUGCCUCCAGAAUAUGCCUCUACUGUGAGAAGGGCAGUACAGUCUGGUCAUGUCAACCUCAAGG2000000006ACAG2000000006ACUGACAAUUGAGUUAC2000000006A 2000000009UCCUGAUGGGCGUCAUGGAAUCGUCAGAGUGGACCGUGUUCCAUUGGCCUCAAAAUUAGUAG2000000006ACCUGCCCUGUGUUAUGGAAAGCUUGAAAACCAUUGAUAAAAAA2000000006ACUUUUUACAAGACAGCUGAUAUCUGUCAGAUGCUUGUAUCCACAGUUGAUGGUGAUCUCUAUCCUCCUGUGGAGGAGCCAGUUGCUAGCACUGAUCCUAAAGCAAGCAAGAAAAAGGAUAAGGACAAAGAGAAAAAGUUUAUCUGGA2000000006ACCACGGAAUUACUCUGCCUCUAAAGAAUGUCAGGAAGAGAAGGUUCCGGAAGACAGCAAAGAAGAAAUAUAUUGAAUCUCCAGAUGUUGAAAAAGAAGUGAAACGAUUGCUGAGUACAGAUGCUGAAGCUGUUAGUACUCGGUGGGAAAUAAUUGCCGAAGAUGAAACAAAGGAGGCAGAAAAUCAAGGCCUGGAUAUCUCUUCUCCAGGAAUGUCUGGUCACAGGCAGGGCCAUGACUCAUUAGAACAUGAUGAGCUUCGGGAGAUAUUCAAUGACCUCAGCAGCAGCAGUGAGGAUGAAGAUGAGACCCAGCAUCAAGAUGAAGAAGAUAUAAACAUCAUUGACACGGAGGAAGAUCUGGAGAGACAGCUACAGGACAAGCUAAAUGAAUCAGAUGA2000000006ACAGCACCAGGAAAAUGAAGGAACCAAUCAGCUGGUUAUGGGAAUUCAGAAGCAGAUUGACAACAUGAAAGGCAAGCUCCAAGAG2000000006ACCCAGGACAGGGCAAAACGACAAGAGGAUCUCAUCAUGAAAGUGGAAAAUCUGGCUCUCAAGAACAGAUUUCAGGCUGUACUGGAUGAGCUCAA2000000006ACAAAAGGAAG2000000006ACCGAGAAAAGGAGCAACUCAGCUCUUUGCAAGAGGAGCUAGAAUCACUCCUAGAGAAGUAAAAAGA2000000006ACUGAUAUUUAAUUUCAGUCUUCA2000000090G 2000000006ACUGGUCAGCAUUAGAAAAUUCUUGGCU2000000009UUAUUGUACUGGGUAUUAAGACCUUGCUCUUCCUAGUCCUUUUAAUGCUGUGUGUUCUGUUAAGUUCUUUCAUUUGUUUGUAAUUUUGUUUUUCAGCAAAUUUAUAUUGUUUUGCUAGGUGUUCA2000000009UCCUAUAAGAAGCAGGAUUGUAUAGGCAGAAAAAUGAUUGUAGGAAAGUUGCAGGAUUAGCGGAAUGUAUGGUUCAACCUUAAUUAUAGCUUCAUUGCAGG2000000006ACU2000000009UUACUGUUUCUCCAUUUUCUAGAAGCUGCUGUUGCUGCUUUGUGAUGACGUGAGAUCAAUAAGAAGAACCUAGUCUAGAG2000000006ACAAUGAUGCUAGUUUGCAUAUGUUUUCCUAUGCAAUAAUUGUUUUCCCAGUUAUUCAAAGCAGCUUUCUAUAUGUAGAGAUGCAAAUUAUUAAGUUGUUUCCAAUACAAUAAAUAAAAGCAUCUGUUUUUCACUUUA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and
evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered
as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors
should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected.
Class 4 is considered as questionable. Class 5 evidence means that
verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences.
Edit locations not originally present in the RNA sequences are marked by their source.
Their scores are in third row.}

Position in the Sequence	101	247	470	496	563	597	617	622	657	688	773	862	866	883	884	946	990	1138	1538	1623	1718	1729	1796	1820	1821	1849	1974	2075	2078	2158
Modification Positions	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Y	m6A	m6A	m6A	m6A	m6A	m6A	m6A	m6A	Gm	m6A	Y	Y	m6A	Y	m6A
Genomic Coordinates	5:141320684:-	5:141320538:-	5:141320315:-	5:141320289:-	5:141320222:-	5:141320188:-	5:141320168:-	5:141320163:-	5:141320128:-	5:141320097:-	5:141320012:-	5:141319923:-	5:141319919:-	5:141319902:-	5:141319901:-	5:141319839:-	5:141319795:-	5:141319647:-	5:141319247:-	5:141319162:-	5:141319067:-	5:141319056:-	5:141318989:-	5:141318965:-	5:141318964:-	5:141318936:-	5:141318811:-	5:141318710:-	5:141318707:-	5:141318627:-
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn ArijeGVTwYBw BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP f6YSioLdAWpr iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU Ap2q43bQLNek gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH Mg9GixDBFQAT msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U D6ncpa2PPWj3 8cMbzB4aD5Se ArijeGVTwYBw KTLz8piFYdwC nfCHyrYzE6fB WiQcrNTGZHPT BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	3TeAZFYFxgvp 4HMi5ykupT9V 5aTkEfEpX8Xm 5FhTyQVy2tKW 5Nnepx5V7yHo 6AyXsheySjfx 6UuHp6YApVKv aHkqKEJkRYyb aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd KRfQJWH4K5KH msuJfBpJvM5H nGifePrmgHfe NjZ8bGGJsNSR Q36pf44ZRvxu QmcpiJ88DBDn QpiKdbVikVz2 UN3tNpbCPHYf V5PvfiKsgFMd VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML BtsJQJ3DteUq bXBqJigD9oV3 dknfVe6BK8aP iezFbUdmY3A6 S9vNeQQYrhac Yfn77uLS5tv8	6UuHp6YApVKv aHkqKEJkRYyb jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn aJksAshEgQ8U 8cMbzB4aD5Se 93arJtwJmuS9 BkoLW2CBToyL nfCHyrYzE6fB BsCW7emuRX7M KENzb7mwdBd9 KjeH7Nsffuas Lny8GcCeVGc9 LZJKems7W2wi PF5iqBNSbHaa UKen6WEino9G XUkp6ghERQML 834aFpha8RvT ksEP666umrV9 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