General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000506690
Gene ID:	ENSG00000161011
Gene Name:	SQSTM1
Sequence (UNICHARACTER ENCODING)	AGCGACCGCUGCCUUCGCUGCCGCCCAGGGCGCUUCCCCGCUCAGGAGCUUCCUCUGGGCCUCUGGACGGAGGCGCGCAGGGGCCCGGGAGGCGGGAACGAUGGGCCUUUCUAGGCGGUAUCAGGGCCGAUGCUCGUGGAUGCAGAGCAGUGACCAGCCCAGAACCGUACCGGCUUCCCGGGGCAGGGGCGGCCCGAGAGCGCCGCUAACGGGAGCAACGGGCCCUGCCCCCGGUGGUGUAGGGGCCACCUCGCCCCGCCCAGCCCAGCCCGAUAUUGAUGGGGGCCCACGCCUUCAUUGUUUUUUUGUUGUUGUUGUUUUUUGUUGUUUUUUGUUUGUUUGUUUUUGAGACGGAGUCUCGCUCUGUUGCCCAGGCUGCAGUGCAGUGGCGCAAUCUCGGCUCACUGCACCCUCCGCCUCCCGGGUUCAAGCGAUUCCCCUGCCCCAGCCUCCCGAGUAGCUGGGACUACAGGCGGCCGCCACCACACCUGGCUAAUUUUUGUAUUUUUAGUAGACACGAGGUUUCACCGUAUUGGCCAGGCUGGUCUCGAACUCCUGACCUUGUGAUCCGCCCGCCUCGGCCUCACAAAGUGCUGGGAUUACAGGCGUGAGCCACCACGCACGGCCCAUUUGCGUUCUAAUUUCAGGCGUUCCUCAAUCCUCUGUGGAACCAGGAAGGGCGCAAAUUAUAAAGGGACUGGCCCAGCGCCGCCUCUGGGCAGGCUUUGGGCAGCGCCUGGCCCGCUGCCGGCUUGGACCUCCCAGACCUAGGGGCCCGGUUCCUGGUGGAGGCUGCAGGGACCUCUGCCCCACCCGCCCGGGGGAGGCCCGAGGGGCUGGACUCAGACUGAGAUUGAAUGCGGCUUUGUCUUCCUAGUUCAGCCCCGGCCCACACCUGGGGCUGAGUGGAAUCGGGAGCUUCGAGGGGUCUGGACAGAGAGAUUGAUGCCAAGAAGGGGGUGGCCGAGCCAGAGGUUGAAGUGGGCUGGAUCCUGAGGCCCCCUGUUAAAGGAGAGGGCUCCCCACUCAGUGCUCCUGGAACUUUCCGAACUAGAGACUGGGACUUAUAGGAGCCUUCUAGAGGAAACUGUCGUGUUUUCACAGUGUCUGCGAGAUUAAUCUCUCAUGGCCGCUGCACAAGAACCUGGCUUUUAGCUGAACUAAGGAGAAAGUCCUACAACAGUUUGGCGUGCAACAUGGGGCUUGAGAAAGGGUUUUCAGCAGCUUCCGGAGGCCGCCUGGЖCUGCAGAAGGCGCCCUGGGCGUGUGUACUUCCACCUCCGCAGGCGCUGGCAUCUCCAGGCUGCUUCAGGCCGCUUUGGACCUCACCAUCGGUAGCAUCUGCGUCUUCUUGAGGUGACUGGAGCCCGUCUAUGGUUUCAGCCAUUGЖCUUCUGGЖCAUGGAAGUGUCGAGGCCAUUUUUGGCCCCUCUCAUAUCCGGGAAGGGCUCCGUGCCCAGUAGAGGUGCAGUGCAGCAGCCAGCUCGCAGCAGUGCUCCCGUAGAGCUGAUGGCAUUGGCAGGAGUGGCGGCUCAGCACAGGGAAGUUCUCCAGUGCCCAGGCCCAGGCUUGCUCUCGGUUUAGGUCCCAUGGCACGUGGGGCUCUGGACCUGCCUGCCUCCAAGACAGCUCUUCCAAGGUUGAGGGUUGGAACUCCACAGCCUCAGCCUCCCAAAGCUUGACCAGGCCCAGCCAUAGCUAGUCUAGGAAAAGAGCAAAUGGCCGUGUUUUUAUAUUUUGACUUUUGCAUUUCAAUAUUAAUUUUUUUGGUAAUGUAAUGCAUUCAAAACAUGGUCCCCCCCCCCCCAAAAAAAAAAGAAAAGAAAAAGAAAAAAGCAUGUUUCUAACCAGGGGUCCUUCAUCUUCUGCAGAUGCCAAGGGUGUCCCUGGCACAGUAAAAGUUUGGAAGCCCUGCCCUAAAGCCUCACCUCACCUGGCAGCUGGGUGUUUCAUUCAUAGCAAAUGUUCUGUAUAUUCACCAUGUACCAAACACACAUGUCACUAAUGAUACAAACACAUGUGCACUGACAUUGACCUCCUCACUGUCUUACUAUAGUCCCAUCCACAGCCACCUUAUCAGAGUCCAUGGGACUCUGACAACUUGUAAUGGGAAAAUUAACCGUGCCUGUAGGGGCCGCCUGGGUAGCGGGAGGUGGUUCAUGAGUACCAGGAAAGCUGGCCCUGGGGCAGACCUGGGCAGGGCAGAGCACAGCUUGCAGGACCUAGUACACAGUGUUGGGAAUUGAAUUUGGGUUUUGACCUUUGAAGCUGUGCAUAAAGUCUAAAACAAGAAGAGGAGUGGAGGCUGAGGUUGUAUUUGUAUUUUAAAAUGAGCAUUUGCCACACAAAGCCAGGAGCUUCAGACCAGCGUGGUUAACACAGCGAGACCCUCCUCUCUGUGAGAAAUU
Sequence (SHORT NAMES ENCODING)	AGCGACCGCUGCCUUCGCUGCCGCCCAGGGCGCUUCCCCGCUCAGGAGCUUCCUCUGGGCCUCUGGACGGAGGCGCGCAGGGGCCCGGGAGGCGGGAACGAUGGGCCUUUCUAGGCGGUAUCAGGGCCGAUGCUCGUGGAUGCAGAGCAGUGACCAGCCCAGAACCGUACCGGCUUCCCGGGGCAGGGGCGGCCCGAGAGCGCCGCUAACGGGAGCAACGGGCCCUGCCCCCGGUGGUGUAGGGGCCACCUCGCCCCGCCCAGCCCAGCCCGAUAUUGAUGGGGGCCCACGCCUUCAUUGUUUUUUUGUUGUUGUUGUUUUUUGUUGUUUUUUGUUUGUUUGUUUUUGAGACGGAGUCUCGCUCUGUUGCCCAGGCUGCAGUGCAGUGGCGCAAUCUCGGCUCACUGCACCCUCCGCCUCCCGGGUUCAAGCGAUUCCCCUGCCCCAGCCUCCCGAGUAGCUGGGACUACAGGCGGCCGCCACCACACCUGGCUAAUUUUUGUAUUUUUAGUAGACACGAGGUUUCACCGUAUUGGCCAGGCUGGUCUCGAACUCCUGACCUUGUGAUCCGCCCGCCUCGGCCUCACAAAGUGCUGGGAUUACAGGCGUGAGCCACCACGCACGGCCCAUUUGCGUUCUAAUUUCAGGCGUUCCUCAAUCCUCUGUGGAACCAGGAAGGGCGCAAAUUAUAAAGGGACUGGCCCAGCGCCGCCUCUGGGCAGGCUUUGGGCAGCGCCUGGCCCGCUGCCGGCUUGGACCUCCCAGACCUAGGGGCCCGGUUCCUGGUGGAGGCUGCAGGGACCUCUGCCCCACCCGCCCGGGGGAGGCCCGAGGGGCUGGACUCAGACUGAGAUUGAAUGCGGCUUUGUCUUCCUAGUUCAGCCCCGGCCCACACCUGGGGCUGAGUGGAAUCGGGAGCUUCGAGGGGUCUGGACAGAGAGAUUGAUGCCAAGAAGGGGGUGGCCGAGCCAGAGGUUGAAGUGGGCUGGAUCCUGAGGCCCCCUGUUAAAGGAGAGGGCUCCCCACUCAGUGCUCCUGGAACUUUCCGAACUAGAGACUGGGACUUAUAGGAGCCUUCUAGAGGAAACUGUCGUGUUUUCACAGUGUCUGCGAGAUUAAUCUCUCAUGGCCGCUGCACAAGAACCUGGCUUUUAGCUGAACUAAGGAGAAAGUCCUACAACAGUUUGGCGUGCAACAUGGGGCUUGAGAAAGGGUUUUCAGCAGCUUCCGGAGGCCGCCUGGm6ACUGCAGAAGGCGCCCUGGGCGUGUGUACUUCCACCUCCGCAGGCGCUGGCAUCUCCAGGCUGCUUCAGGCCGCUUUGGACCUCACCAUCGGUAGCAUCUGCGUCUUCUUGAGGUGACUGGAGCCCGUCUAUGGUUUCAGCCAUUGm6ACUUCUGGm6ACAUGGAAGUGUCGAGGCCAUUUUUGGCCCCUCUCAUAUCCGGGAAGGGCUCCGUGCCCAGUAGAGGUGCAGUGCAGCAGCCAGCUCGCAGCAGUGCUCCCGUAGAGCUGAUGGCAUUGGCAGGAGUGGCGGCUCAGCACAGGGAAGUUCUCCAGUGCCCAGGCCCAGGCUUGCUCUCGGUUUAGGUCCCAUGGCACGUGGGGCUCUGGACCUGCCUGCCUCCAAGACAGCUCUUCCAAGGUUGAGGGUUGGAACUCCACAGCCUCAGCCUCCCAAAGCUUGACCAGGCCCAGCCAUAGCUAGUCUAGGAAAAGAGCAAAUGGCCGUGUUUUUAUAUUUUGACUUUUGCAUUUCAAUAUUAAUUUUUUUGGUAAUGUAAUGCAUUCAAAACAUGGUCCCCCCCCCCCCAAAAAAAAAAGAAAAGAAAAAGAAAAAAGCAUGUUUCUAACCAGGGGUCCUUCAUCUUCUGCAGAUGCCAAGGGUGUCCCUGGCACAGUAAAAGUUUGGAAGCCCUGCCCUAAAGCCUCACCUCACCUGGCAGCUGGGUGUUUCAUUCAUAGCAAAUGUUCUGUAUAUUCACCAUGUACCAAACACACAUGUCACUAAUGAUACAAACACAUGUGCACUGACAUUGACCUCCUCACUGUCUUACUAUAGUCCCAUCCACAGCCACCUUAUCAGAGUCCAUGGGACUCUGACAACUUGUAAUGGGAAAAUUAACCGUGCCUGUAGGGGCCGCCUGGGUAGCGGGAGGUGGUUCAUGAGUACCAGGAAAGCUGGCCCUGGGGCAGACCUGGGCAGGGCAGAGCACAGCUUGCAGGACCUAGUACACAGUGUUGGGAAUUGAAUUUGGGUUUUGACCUUUGAAGCUGUGCAUAAAGUCUAAAACAAGAAGAGGAGUGGAGGCUGAGGUUGUAUUUGUAUUUUAAAAUGAGCAUUUGCCACACAAAGCCAGGAGCUUCAGACCAGCGUGGUUAACACAGCGAGACCCUCCUCUCUGUGAGAAAUU
Sequence (MODOMICS CODE ENCODING)	AGCGACCGCUGCCUUCGCUGCCGCCCAGGGCGCUUCCCCGCUCAGGAGCUUCCUCUGGGCCUCUGGACGGAGGCGCGCAGGGGCCCGGGAGGCGGGAACGAUGGGCCUUUCUAGGCGGUAUCAGGGCCGAUGCUCGUGGAUGCAGAGCAGUGACCAGCCCAGAACCGUACCGGCUUCCCGGGGCAGGGGCGGCCCGAGAGCGCCGCUAACGGGAGCAACGGGCCCUGCCCCCGGUGGUGUAGGGGCCACCUCGCCCCGCCCAGCCCAGCCCGAUAUUGAUGGGGGCCCACGCCUUCAUUGUUUUUUUGUUGUUGUUGUUUUUUGUUGUUUUUUGUUUGUUUGUUUUUGAGACGGAGUCUCGCUCUGUUGCCCAGGCUGCAGUGCAGUGGCGCAAUCUCGGCUCACUGCACCCUCCGCCUCCCGGGUUCAAGCGAUUCCCCUGCCCCAGCCUCCCGAGUAGCUGGGACUACAGGCGGCCGCCACCACACCUGGCUAAUUUUUGUAUUUUUAGUAGACACGAGGUUUCACCGUAUUGGCCAGGCUGGUCUCGAACUCCUGACCUUGUGAUCCGCCCGCCUCGGCCUCACAAAGUGCUGGGAUUACAGGCGUGAGCCACCACGCACGGCCCAUUUGCGUUCUAAUUUCAGGCGUUCCUCAAUCCUCUGUGGAACCAGGAAGGGCGCAAAUUAUAAAGGGACUGGCCCAGCGCCGCCUCUGGGCAGGCUUUGGGCAGCGCCUGGCCCGCUGCCGGCUUGGACCUCCCAGACCUAGGGGCCCGGUUCCUGGUGGAGGCUGCAGGGACCUCUGCCCCACCCGCCCGGGGGAGGCCCGAGGGGCUGGACUCAGACUGAGAUUGAAUGCGGCUUUGUCUUCCUAGUUCAGCCCCGGCCCACACCUGGGGCUGAGUGGAAUCGGGAGCUUCGAGGGGUCUGGACAGAGAGAUUGAUGCCAAGAAGGGGGUGGCCGAGCCAGAGGUUGAAGUGGGCUGGAUCCUGAGGCCCCCUGUUAAAGGAGAGGGCUCCCCACUCAGUGCUCCUGGAACUUUCCGAACUAGAGACUGGGACUUAUAGGAGCCUUCUAGAGGAAACUGUCGUGUUUUCACAGUGUCUGCGAGAUUAAUCUCUCAUGGCCGCUGCACAAGAACCUGGCUUUUAGCUGAACUAAGGAGAAAGUCCUACAACAGUUUGGCGUGCAACAUGGGGCUUGAGAAAGGGUUUUCAGCAGCUUCCGGAGGCCGCCUGG2000000006ACUGCAGAAGGCGCCCUGGGCGUGUGUACUUCCACCUCCGCAGGCGCUGGCAUCUCCAGGCUGCUUCAGGCCGCUUUGGACCUCACCAUCGGUAGCAUCUGCGUCUUCUUGAGGUGACUGGAGCCCGUCUAUGGUUUCAGCCAUUG2000000006ACUUCUGG2000000006ACAUGGAAGUGUCGAGGCCAUUUUUGGCCCCUCUCAUAUCCGGGAAGGGCUCCGUGCCCAGUAGAGGUGCAGUGCAGCAGCCAGCUCGCAGCAGUGCUCCCGUAGAGCUGAUGGCAUUGGCAGGAGUGGCGGCUCAGCACAGGGAAGUUCUCCAGUGCCCAGGCCCAGGCUUGCUCUCGGUUUAGGUCCCAUGGCACGUGGGGCUCUGGACCUGCCUGCCUCCAAGACAGCUCUUCCAAGGUUGAGGGUUGGAACUCCACAGCCUCAGCCUCCCAAAGCUUGACCAGGCCCAGCCAUAGCUAGUCUAGGAAAAGAGCAAAUGGCCGUGUUUUUAUAUUUUGACUUUUGCAUUUCAAUAUUAAUUUUUUUGGUAAUGUAAUGCAUUCAAAACAUGGUCCCCCCCCCCCCAAAAAAAAAAGAAAAGAAAAAGAAAAAAGCAUGUUUCUAACCAGGGGUCCUUCAUCUUCUGCAGAUGCCAAGGGUGUCCCUGGCACAGUAAAAGUUUGGAAGCCCUGCCCUAAAGCCUCACCUCACCUGGCAGCUGGGUGUUUCAUUCAUAGCAAAUGUUCUGUAUAUUCACCAUGUACCAAACACACAUGUCACUAAUGAUACAAACACAUGUGCACUGACAUUGACCUCCUCACUGUCUUACUAUAGUCCCAUCCACAGCCACCUUAUCAGAGUCCAUGGGACUCUGACAACUUGUAAUGGGAAAAUUAACCGUGCCUGUAGGGGCCGCCUGGGUAGCGGGAGGUGGUUCAUGAGUACCAGGAAAGCUGGCCCUGGGGCAGACCUGGGCAGGGCAGAGCACAGCUUGCAGGACCUAGUACACAGUGUUGGGAAUUGAAUUUGGGUUUUGACCUUUGAAGCUGUGCAUAAAGUCUAAAACAAGAAGAGGAGUGGAGGCUGAGGUUGUAUUUGUAUUUUAAAAUGAGCAUUUGCCACACAAAGCCAGGAGCUUCAGACCAGCGUGGUUAACACAGCGAGACCCUCCUCUCUGUGAGAAAUU

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	1243	1389	1397
Modification Positions	m6A	m6A	m6A
Genomic Coordinates	5:179812436:+	5:179812582:+	5:179812590:+
Level of Experimental Evidence	3	3	3
Level of Experimental Reliability	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	6UuHp6YApVKv gBgcfFQ5WN9C gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn Yfn77uLS5tv8	6UuHp6YApVKv gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H NjZ8bGGJsNSR QmcpiJ88DBDn QpiKdbVikVz2 VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8	5FhTyQVy2tKW 6UuHp6YApVKv aivdrAsbdKEU gZuvgwMuBfgh jNkxUQNx8GRd Mg9GixDBFQAT msuJfBpJvM5H QmcpiJ88DBDn VL7zkHvkfkoB VyCX26p5UBRL WdHxkJGRmFxn BsCW7emuRX7M Lny8GcCeVGc9 LZJKems7W2wi UKen6WEino9G XUkp6ghERQML Yfn77uLS5tv8