General Data

RNA Type	mRNA
Original Source	Sci-ModoM
Transcript ID:	ENST00000239243
Gene ID:	ENSG00000120149
Gene Name:	MSX2
Sequence (UNICHARACTER ENCODING)	GCAGCAAAAAAGUUUGAGUCGCCGCUGCCGGGUUGCCAGCGGAGUCGCGCGUCGGGAGCUACGUAGGGCAGAGAAGUCAUGGCUUCUCCGUCCAAAGGCAAUGACUUGUUUUCGCCCGACGAGGAGGGCCCAGCAGUGGUGGCCGGACCAGGCCCGGGGCCUGGGGGCGCCGAGGGGGCCGCGGAGGAGCGCCGCGUCAAGGUCUCCAGCCUGCCCUUCAGCGUGGAGGCGCUCAUGUCCGACAAGAAGCCGCCCAAGGAGGCGUCCCCGCUGCCGGCCGAAAGCGCCUCGGCCGGGGCCACCCUGCGGCCACUGCUGCUGUCGGGGCACGGCGCUCGGGAAGCGCACAGCCCCGGGCCGCUGGUGAAGCCCUUCGAGACCGCCUCGGUCAAGUCGGAAAAUUCAGAAGAUGGAGCGGCGUGGAUGCAGGAACCCGGCCGAUAUUCGCCGCCGCCAAGACAUAUGAGCCCUACCACCUGCACCCUGAGGAAACACAAGACCAAUCGGAAGCCGCGCACGCCCUPUACCACAPCCCAGCUCCUCGCCCUGGAGCGCAAGUUCCGUCAGAAACAGUACCUCUCCAUUGCAGAGCGUGCAGAGUUCUCCAGCUCUCUGAACCUCACAGAGACCCAGGUCAAAAUCUGGUUCCAGAЖCCGAAGGGCCAAGGCGAAAAGACUGCAGGAGGCAGAЖCUGGAAAAGCUGAAAAUGGCUGCAAAACCUAUGCUGCCCUCCAGCUUCAGUCUCCCUUUCCCCAUCAGCUCGCCCCUGCAGGCAGCGUCCAUAUAUGGAGCAPCCUACCCGUUCCAUAGЖCCUGUGCUUCCCAPCCCGCCUGUGGGЖCUCUAUGCCACGCCAGUGGGAUAUGGCAUGUACCACCUGUCCUAAGGAAGACCAGAUCAAUAGЖCUCCAUGAUGGAUGCUUGUUUCAAAGGGUUUCCUCUCCCUCUCCACGAAGGCAGUACCAGCCAGUACUCCUGCUCUGCUAACCCUGCGUGCACCACCCUAAGCGGCUAGGCUGACAGGGCCACACGACAUAGCUGAAAUUUGUUCUGUAGGCGGAGGCACCAAGCCCUGUUUUCUUGGUGUAAUCUUCCAGAUGCCCCCUUUUCCUUUCACAAAGAUUGGCUCUGAUGGUUUUUAUGUAUAAAUAUAUAUAUAUAAUAAAAUAUAAUACAUUUUUAUACAGCAGACGUAAAAAUUCAAAUUAUUUUAAAAGGCAAAAUUUAUAUACAUAUGUGCUUUUUUUCUAUAUCUCACCUUCCCAAAAGACACUGUGUAAGUCCAUUUGUUGUAUUUUCUUAAAGAGGGAGACAAAUUAUUUGCAAAAUGUGCUAAAGUCAAUGAUUUUUACGGGAUUAUUGACUUCUGCUUAUGGAAAACAAAGAAACAGACACAAUGCACACAGAAAAUAUUAGAUAUGGAGAGAUUAUUCAAAGUGAAGGGGACACAUCAUAUUUCUGCAUUUUACUUGCAUUAAAAGAAACCUCUUUAUAUACUACAGUUGUUCCUAUCUCUCCCCCGCCCCCCACCGCCCCACCACACACAUAUUUUUAAAGUUUUUCCUUUUUUAAGAAUAUUUUUGUAAGACCAAUACCUGGGAUGAGAAGAAUCCUGAGACUGCCUGGAGGUGAGGUAGAAAAUUAGAAAUACUUCCUAAUUCUUCUCAAGGCUGUUGGUAACUPUAUUUCAGAUAAUUGGAGAGUAAAAUGUUAAAACCUGUUGAGAGGAAUUGAUGGUUUCUGAGAAAUACUAGGUACAUUCAPCCUCACAGAUUGCAAAGGUGAUUUGGGUGGGGGUUUAGUAAUUUUCUGCUUAAAAAAUGAGUAUCUUGUAACCAUUACCUAUAUGCUAAAUAUUCUUGAACAAUUAGUAGAUCCAGAAAGAAAAAAAAAUAUGCUUUCUCUGUGUGUGUACCUGUUGUAUGUCCUAAACUUAUUAGAAAAUUUUAUAUACUUUUUUACAUGUUGGGGGGCAGAAGGUAAAGCCAUGUUUUGACUUGGUGAAAAUGGGAUUGUCAAЖCAGCCCAUUAAGUUCCCUGGUAUUUCACCUUCCUGUCCAUCUGUCCCCUCCCUCCGGUAUACCUPUAUCCCUUUGAAAGGGUGCUUGUACAAUUUGAUAUAUUUUAUUGAAGAGUUAUCUCUUAUUCUGAAUUAAAUUAAGCAUUUGUUUUAUUGCAGUAAAGUUUGUCCAAACUCACAA
Sequence (SHORT NAMES ENCODING)	GCAGCAAAAAAGUUUGAGUCGCCGCUGCCGGGUUGCCAGCGGAGUCGCGCGUCGGGAGCUACGUAGGGCAGAGAAGUCAUGGCUUCUCCGUCCAAAGGCAAUGACUUGUUUUCGCCCGACGAGGAGGGCCCAGCAGUGGUGGCCGGACCAGGCCCGGGGCCUGGGGGCGCCGAGGGGGCCGCGGAGGAGCGCCGCGUCAAGGUCUCCAGCCUGCCCUUCAGCGUGGAGGCGCUCAUGUCCGACAAGAAGCCGCCCAAGGAGGCGUCCCCGCUGCCGGCCGAAAGCGCCUCGGCCGGGGCCACCCUGCGGCCACUGCUGCUGUCGGGGCACGGCGCUCGGGAAGCGCACAGCCCCGGGCCGCUGGUGAAGCCCUUCGAGACCGCCUCGGUCAAGUCGGAAAAUUCAGAAGAUGGAGCGGCGUGGAUGCAGGAACCCGGCCGAUAUUCGCCGCCGCCAAGACAUAUGAGCCCUACCACCUGCACCCUGAGGAAACACAAGACCAAUCGGAAGCCGCGCACGCCCUYUACCACAYCCCAGCUCCUCGCCCUGGAGCGCAAGUUCCGUCAGAAACAGUACCUCUCCAUUGCAGAGCGUGCAGAGUUCUCCAGCUCUCUGAACCUCACAGAGACCCAGGUCAAAAUCUGGUUCCAGAm6ACCGAAGGGCCAAGGCGAAAAGACUGCAGGAGGCAGAm6ACUGGAAAAGCUGAAAAUGGCUGCAAAACCUAUGCUGCCCUCCAGCUUCAGUCUCCCUUUCCCCAUCAGCUCGCCCCUGCAGGCAGCGUCCAUAUAUGGAGCAYCCUACCCGUUCCAUAGm6ACCUGUGCUUCCCAYCCCGCCUGUGGGm6ACUCUAUGCCACGCCAGUGGGAUAUGGCAUGUACCACCUGUCCUAAGGAAGACCAGAUCAAUAGm6ACUCCAUGAUGGAUGCUUGUUUCAAAGGGUUUCCUCUCCCUCUCCACGAAGGCAGUACCAGCCAGUACUCCUGCUCUGCUAACCCUGCGUGCACCACCCUAAGCGGCUAGGCUGACAGGGCCACACGACAUAGCUGAAAUUUGUUCUGUAGGCGGAGGCACCAAGCCCUGUUUUCUUGGUGUAAUCUUCCAGAUGCCCCCUUUUCCUUUCACAAAGAUUGGCUCUGAUGGUUUUUAUGUAUAAAUAUAUAUAUAUAAUAAAAUAUAAUACAUUUUUAUACAGCAGACGUAAAAAUUCAAAUUAUUUUAAAAGGCAAAAUUUAUAUACAUAUGUGCUUUUUUUCUAUAUCUCACCUUCCCAAAAGACACUGUGUAAGUCCAUUUGUUGUAUUUUCUUAAAGAGGGAGACAAAUUAUUUGCAAAAUGUGCUAAAGUCAAUGAUUUUUACGGGAUUAUUGACUUCUGCUUAUGGAAAACAAAGAAACAGACACAAUGCACACAGAAAAUAUUAGAUAUGGAGAGAUUAUUCAAAGUGAAGGGGACACAUCAUAUUUCUGCAUUUUACUUGCAUUAAAAGAAACCUCUUUAUAUACUACAGUUGUUCCUAUCUCUCCCCCGCCCCCCACCGCCCCACCACACACAUAUUUUUAAAGUUUUUCCUUUUUUAAGAAUAUUUUUGUAAGACCAAUACCUGGGAUGAGAAGAAUCCUGAGACUGCCUGGAGGUGAGGUAGAAAAUUAGAAAUACUUCCUAAUUCUUCUCAAGGCUGUUGGUAACUYUAUUUCAGAUAAUUGGAGAGUAAAAUGUUAAAACCUGUUGAGAGGAAUUGAUGGUUUCUGAGAAAUACUAGGUACAUUCAYCCUCACAGAUUGCAAAGGUGAUUUGGGUGGGGGUUUAGUAAUUUUCUGCUUAAAAAAUGAGUAUCUUGUAACCAUUACCUAUAUGCUAAAUAUUCUUGAACAAUUAGUAGAUCCAGAAAGAAAAAAAAAUAUGCUUUCUCUGUGUGUGUACCUGUUGUAUGUCCUAAACUUAUUAGAAAAUUUUAUAUACUUUUUUACAUGUUGGGGGGCAGAAGGUAAAGCCAUGUUUUGACUUGGUGAAAAUGGGAUUGUCAAm6ACAGCCCAUUAAGUUCCCUGGUAUUUCACCUUCCUGUCCAUCUGUCCCCUCCCUCCGGUAUACCUYUAUCCCUUUGAAAGGGUGCUUGUACAAUUUGAUAUAUUUUAUUGAAGAGUUAUCUCUUAUUCUGAAUUAAAUUAAGCAUUUGUUUUAUUGCAGUAAAGUUUGUCCAAACUCACAA
Sequence (MODOMICS CODE ENCODING)	GCAGCAAAAAAGUUUGAGUCGCCGCUGCCGGGUUGCCAGCGGAGUCGCGCGUCGGGAGCUACGUAGGGCAGAGAAGUCAUGGCUUCUCCGUCCAAAGGCAAUGACUUGUUUUCGCCCGACGAGGAGGGCCCAGCAGUGGUGGCCGGACCAGGCCCGGGGCCUGGGGGCGCCGAGGGGGCCGCGGAGGAGCGCCGCGUCAAGGUCUCCAGCCUGCCCUUCAGCGUGGAGGCGCUCAUGUCCGACAAGAAGCCGCCCAAGGAGGCGUCCCCGCUGCCGGCCGAAAGCGCCUCGGCCGGGGCCACCCUGCGGCCACUGCUGCUGUCGGGGCACGGCGCUCGGGAAGCGCACAGCCCCGGGCCGCUGGUGAAGCCCUUCGAGACCGCCUCGGUCAAGUCGGAAAAUUCAGAAGAUGGAGCGGCGUGGAUGCAGGAACCCGGCCGAUAUUCGCCGCCGCCAAGACAUAUGAGCCCUACCACCUGCACCCUGAGGAAACACAAGACCAAUCGGAAGCCGCGCACGCCCU2000000009UUACCACA2000000009UCCCAGCUCCUCGCCCUGGAGCGCAAGUUCCGUCAGAAACAGUACCUCUCCAUUGCAGAGCGUGCAGAGUUCUCCAGCUCUCUGAACCUCACAGAGACCCAGGUCAAAAUCUGGUUCCAGA2000000006ACCGAAGGGCCAAGGCGAAAAGACUGCAGGAGGCAGA2000000006ACUGGAAAAGCUGAAAAUGGCUGCAAAACCUAUGCUGCCCUCCAGCUUCAGUCUCCCUUUCCCCAUCAGCUCGCCCCUGCAGGCAGCGUCCAUAUAUGGAGCA2000000009UCCUACCCGUUCCAUAG2000000006ACCUGUGCUUCCCA2000000009UCCCGCCUGUGGG2000000006ACUCUAUGCCACGCCAGUGGGAUAUGGCAUGUACCACCUGUCCUAAGGAAGACCAGAUCAAUAG2000000006ACUCCAUGAUGGAUGCUUGUUUCAAAGGGUUUCCUCUCCCUCUCCACGAAGGCAGUACCAGCCAGUACUCCUGCUCUGCUAACCCUGCGUGCACCACCCUAAGCGGCUAGGCUGACAGGGCCACACGACAUAGCUGAAAUUUGUUCUGUAGGCGGAGGCACCAAGCCCUGUUUUCUUGGUGUAAUCUUCCAGAUGCCCCCUUUUCCUUUCACAAAGAUUGGCUCUGAUGGUUUUUAUGUAUAAAUAUAUAUAUAUAAUAAAAUAUAAUACAUUUUUAUACAGCAGACGUAAAAAUUCAAAUUAUUUUAAAAGGCAAAAUUUAUAUACAUAUGUGCUUUUUUUCUAUAUCUCACCUUCCCAAAAGACACUGUGUAAGUCCAUUUGUUGUAUUUUCUUAAAGAGGGAGACAAAUUAUUUGCAAAAUGUGCUAAAGUCAAUGAUUUUUACGGGAUUAUUGACUUCUGCUUAUGGAAAACAAAGAAACAGACACAAUGCACACAGAAAAUAUUAGAUAUGGAGAGAUUAUUCAAAGUGAAGGGGACACAUCAUAUUUCUGCAUUUUACUUGCAUUAAAAGAAACCUCUUUAUAUACUACAGUUGUUCCUAUCUCUCCCCCGCCCCCCACCGCCCCACCACACACAUAUUUUUAAAGUUUUUCCUUUUUUAAGAAUAUUUUUGUAAGACCAAUACCUGGGAUGAGAAGAAUCCUGAGACUGCCUGGAGGUGAGGUAGAAAAUUAGAAAUACUUCCUAAUUCUUCUCAAGGCUGUUGGUAACU2000000009UUAUUUCAGAUAAUUGGAGAGUAAAAUGUUAAAACCUGUUGAGAGGAAUUGAUGGUUUCUGAGAAAUACUAGGUACAUUCA2000000009UCCUCACAGAUUGCAAAGGUGAUUUGGGUGGGGGUUUAGUAAUUUUCUGCUUAAAAAAUGAGUAUCUUGUAACCAUUACCUAUAUGCUAAAUAUUCUUGAACAAUUAGUAGAUCCAGAAAGAAAAAAAAAUAUGCUUUCUCUGUGUGUGUACCUGUUGUAUGUCCUAAACUUAUUAGAAAAUUUUAUAUACUUUUUUACAUGUUGGGGGGCAGAAGGUAAAGCCAUGUUUUGACUUGGUGAAAAUGGGAUUGUCAA2000000006ACAGCCCAUUAAGUUCCCUGGUAUUUCACCUUCCUGUCCAUCUGUCCCCUCCCUCCGGUAUACCU2000000009UUAUCCCUUUGAAAGGGUGCUUGUACAAUUUGAUAUAUUUUAUUGAAGAGUUAUCUCUUAUUCUGAAUUAAAUUAAGCAUUUGUUUUAUUGCAGUAAAGUUUGUCCAAACUCACAA

Score Table

_{Table containing the score explanation. Score identify the level of experimental reliability and evidence so as exaplained in the 2023 release manuscript. Class 1 should be considered as highlyrelevant. Class 2 evidences are considered as Solid, namely large errors are unlikely and minor errors should not undermine the meaning of data. Class 3 is considered as speculative and errors are expected. Class 4 is considered as questionable. Class 5 evidence means that verification and data are still to be collected. Class 6 data cannot be estimated.}

Method Classification	Score
Multiple direct experimental evidence	1
Direct experimental evidence	2
Inferred based on indirect experimental evidence	3
Predicted computationally	4
Evidence not yet annotated (Unknown)	5
Irrelevant	6

Modification Positions

_{Table containing the original modifications present in the MODOMICS sequences. Edit locations not originally present in the RNA sequences are marked by their source. Their scores are in third row.}

Position in the Sequence	524	532	653	690	793	810	824	837	901	1678	1759	2015	2080
Modification Positions	Y	Y	m6A	m6A	Y	m6A	Y	m6A	m6A	Y	Y	m6A	Y
Genomic Coordinates	5:174729225:+	5:174729233:+	5:174729354:+	5:174729391:+	5:174729494:+	5:174729511:+	5:174729525:+	5:174729538:+	5:174729602:+	5:174730379:+	5:174730460:+	5:174730716:+	5:174730781:+
Level of Experimental Evidence	3	3	3	3	3	3	3	3	3	3	3	3	3
Level of Experimental Reliability	3	3	3	3	3	3	3	3	3	3	3	3	3
Source	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM	Sci-ModoM
EUFIDs	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	4HMi5ykupT9V 5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL Lny8GcCeVGc9 BtsJQJ3DteUq Yfn77uLS5tv8	5Nnepx5V7yHo aHkqKEJkRYyb gBgcfFQ5WN9C Mg9GixDBFQAT msuJfBpJvM5H VyCX26p5UBRL BtsJQJ3DteUq bXBqJigD9oV3 iezFbUdmY3A6 Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8	BtsJQJ3DteUq Yfn77uLS5tv8